View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12153_high_6 (Length: 239)
Name: NF12153_high_6
Description: NF12153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12153_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 54952217 - 54952437
Alignment:
| Q |
18 |
cctcttacttctcatccttcacactctcttcaggtttttactcgcacctcttttgatactactacgccacataaccatgcatttaacgtgacacaatttg |
117 |
Q |
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| T |
54952217 |
cctcttacttctcatccttcacactctcttcaggtttttactcgcacct-ttttgatactacttcgccacataatcatgcatttaacgtgacacaatttg |
54952315 |
T |
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| Q |
118 |
gacagtcaaattgaatttaaacttccaactttactaaattgagtccaaaatacaaagttggaatatgatccgtcttatcttaccgaatatgtacgatcat |
217 |
Q |
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| T |
54952316 |
gacagtcaaattaaatttaaacttccaactttactaaattgagtccaaaatataaagttggaatatgaaccgtcttatcttaccgaatatgtacgatcat |
54952415 |
T |
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| Q |
218 |
agataattcaaatccaacatat |
239 |
Q |
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| T |
54952416 |
agataattcaaattcaacatat |
54952437 |
T |
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