View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12153_low_3 (Length: 362)
Name: NF12153_low_3
Description: NF12153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12153_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 9086835 - 9087170
Alignment:
| Q |
18 |
ctaaggttatgcatatgtaacactcatctactcggttaaagtataatcgaaaaccaaattatttggaataatggaatcaaataattatttgggattaata |
117 |
Q |
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| T |
9086835 |
ctaaggttatgcaaatgtaacactcatctactcggttaaagtataatcgaaaaccaaattatttggaataatggaatcaaataattatttgggattaata |
9086934 |
T |
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| Q |
118 |
ttatcatacctgttgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtgtctaaaagaagattctctggctgcaaaatataggga |
217 |
Q |
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| T |
9086935 |
ttatcatacctgctgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtatctaaaagaagattctctggctgcaaaatataggga |
9087034 |
T |
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| Q |
218 |
gtaatattcttttgattaact-aaacataagaaagagtaaaaatagtttattcatgttcaaaactaacaaattattaattaaattagagaggaaataaga |
316 |
Q |
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| T |
9087035 |
gtaatattcttttgattaactaaaacttaagaaagagtaaaaatagtttattcatgttcaaaactaacaaattattaattaaattagagaggaaataaga |
9087134 |
T |
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| Q |
317 |
ggattaaggaagttgttagaccttcaaatctctgtg |
352 |
Q |
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| T |
9087135 |
ggattaaggaagttgttagaccttcaaatctctgtg |
9087170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 9078058 - 9078393
Alignment:
| Q |
18 |
ctaaggttatgcatatgtaacactcatctactcggttaaagtataatcgaaaaccaaattatttggaataatggaatcaaataattatttgggattaata |
117 |
Q |
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| T |
9078058 |
ctaaggttattcaaatgtaacactcatctactaggttaaagtataatccaaaaccaaattatttggaataattgaatcaaataattatttgggattaata |
9078157 |
T |
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| Q |
118 |
ttatcatacctgttgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtgtctaaaagaagattctctggctgcaaaatataggga |
217 |
Q |
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| T |
9078158 |
taatcatacctgctgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtatctaaaagaagattctctggctgcaaaatataggga |
9078257 |
T |
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| Q |
218 |
gtaatattcttttgattaact-aaacataagaaagagtaaaaatagtttattcatgttcaaaactaacaaattattaattaaattagagaggaaataaga |
316 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9078258 |
gtaatattcttttgattaactaaaacttaagaaagagtaaaaatagtttattcatgttcaaaactaacaaattattaattaaattagagaggaaataaga |
9078357 |
T |
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| Q |
317 |
ggattaaggaagttgttagaccttcaaatctctgtg |
352 |
Q |
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| T |
9078358 |
ggattaaggaagttgttagaccttcaaatctctgtg |
9078393 |
T |
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