View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12153_low_4 (Length: 302)
Name: NF12153_low_4
Description: NF12153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12153_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 54952772 - 54952471
Alignment:
| Q |
1 |
tttgtcttctcaaagccatttgctcgtacaggaaatttgactgtggaggaggatggattgctccagagaaagactgaaaatttgtttaagaatattaatt |
100 |
Q |
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| T |
54952772 |
tttgtcttctcaaagccatttgctcgtacaggaaatttgactgtggaggaggatggattgctccagagaaagactgaaaatttgtttaagaatattaatt |
54952673 |
T |
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| Q |
101 |
aagatcataattatagttagcataatgaataaaatcactatttggtcaattccataattggaaattgtttagtgtgaatatatgtggaatttgaattaaa |
200 |
Q |
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| T |
54952672 |
aagatcataattatcgttagcataatgaataaaatcactctttggtcaataccataattggaaattgtttagtgtgaatatatgtggaatttgaattaaa |
54952573 |
T |
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| Q |
201 |
ttgttcacatttagaccgtcggattaagatcagacaattcatgctctaactttatattttagactcgagtcagaaagtgagtgagtcgtaatatgtagta |
300 |
Q |
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| T |
54952572 |
ttgttcacatttagaccgtcggatcaagattagacaattcatgctctaattttatattttagactcgagtcggaaagtgagtgagtcgtaatatatagta |
54952473 |
T |
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| Q |
301 |
tt |
302 |
Q |
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|| |
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| T |
54952472 |
tt |
54952471 |
T |
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