View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12153_low_5 (Length: 275)
Name: NF12153_low_5
Description: NF12153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12153_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 26208308 - 26208060
Alignment:
| Q |
18 |
aagagttggaagtttgttcaatgaaaaaggaagtgaatcagctttgtctcttggccaaaacttaggggaagttgaagggtctcttttgggaaaattaatt |
117 |
Q |
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| T |
26208308 |
aagagttggaagtttgttcaatgaaaaaggaagtgaatcagctttgtctcttggccaaaacttaggggaagttgaagggtttcttttgggaaaattaatt |
26208209 |
T |
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| Q |
118 |
tgcattcttttcccaacttttaagtcttttaaggttaagaacaccataacagaagggtccatgtgattgtgattatgtgcatgatgtttgtgttctgttt |
217 |
Q |
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| T |
26208208 |
tgcattcttttcccaacttttaagtcttttaaggtgaagaacaccataacagaaggatccatgtgattgtgattatgtgcatgatgtttgtgttctgttt |
26208109 |
T |
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| Q |
218 |
gatgttcattagtagcagttttgttcagtgccatattcaagcgtttgct |
266 |
Q |
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| T |
26208108 |
gatgttcattagtagcagttttgttcactgcaatatccaagagtttgct |
26208060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 54449256 - 54449382
Alignment:
| Q |
38 |
atgaaaaaggaagtgaatcagctttgtctcttggccaaaacttaggggaagttgaagggtctcttttgggaaaattaatttgcattcttttcccaacttt |
137 |
Q |
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| T |
54449256 |
atgagaaaggaagtgattcagcttcttctttgggccataacttaggggaagttgatgggtctctcttaggaaaataaatttgcattatttttcctacttt |
54449355 |
T |
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| Q |
138 |
taagtcttttaaggttaagaacaccat |
164 |
Q |
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| T |
54449356 |
caaatcttttaaagtgaagaataccat |
54449382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 49755018 - 49754892
Alignment:
| Q |
38 |
atgaaaaaggaagtgaatcagctttgtctcttggccaaaacttaggggaagttgaagggtctcttttgggaaaattaatttgcattcttttcccaacttt |
137 |
Q |
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|||||||||||||||| |||||||| | | | | ||| ||||||||||||||||| |||||||| || ||||||| |||||||||| | ||||| ||||| |
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| T |
49755018 |
atgaaaaaggaagtgattcagctttttgtttggaccataacttaggggaagttgatgggtctctcttaggaaaataaatttgcattatgttccctacttt |
49754919 |
T |
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| Q |
138 |
taagtcttttaaggttaagaacaccat |
164 |
Q |
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|| ||||| || || ||||| ||||| |
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| T |
49754918 |
caaatctttcaaagtgaagaaaaccat |
49754892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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