View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12153_low_7 (Length: 216)

Name: NF12153_low_7
Description: NF12153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12153_low_7
NF12153_low_7
[»] chr4 (29 HSPs)
chr4 (15-203)||(1548373-1548562)
chr4 (15-181)||(1552714-1552883)
chr4 (64-171)||(1524485-1524592)
chr4 (69-180)||(8187095-8187206)
chr4 (52-180)||(546897-547025)
chr4 (69-171)||(1513411-1513513)
chr4 (15-171)||(553472-553628)
chr4 (69-171)||(12121461-12121563)
chr4 (69-169)||(8184034-8184134)
chr4 (52-167)||(532186-532301)
chr4 (70-169)||(558493-558592)
chr4 (69-150)||(1519146-1519227)
chr4 (15-180)||(3438516-3438680)
chr4 (83-171)||(1508021-1508109)
chr4 (55-171)||(1537757-1537873)
chr4 (92-168)||(55908755-55908831)
chr4 (49-180)||(570335-570466)
chr4 (59-180)||(640899-641020)
chr4 (74-149)||(659726-659799)
chr4 (69-180)||(7307844-7307955)
chr4 (52-178)||(55505095-55505221)
chr4 (92-138)||(12116602-12116648)
chr4 (20-136)||(1600447-1600563)
chr4 (52-171)||(53761759-53761876)
chr4 (120-171)||(566182-566233)
chr4 (15-109)||(644885-644979)
chr4 (69-171)||(1489365-1489467)
chr4 (69-171)||(7225887-7225989)
chr4 (69-135)||(1545802-1545868)
[»] chr8 (9 HSPs)
chr8 (18-171)||(18315226-18315379)
chr8 (53-171)||(32151294-32151412)
chr8 (69-169)||(27922503-27922603)
chr8 (69-176)||(17636405-17636512)
chr8 (81-171)||(34936179-34936269)
chr8 (15-171)||(28246245-28246399)
chr8 (64-180)||(21235542-21235658)
chr8 (69-157)||(17628018-17628106)
chr8 (129-169)||(44736530-44736570)
[»] chr3 (8 HSPs)
chr3 (49-180)||(51113765-51113896)
chr3 (15-176)||(51120843-51121004)
chr3 (15-171)||(13470682-13470838)
chr3 (52-171)||(51764427-51764546)
chr3 (84-152)||(27005791-27005859)
chr3 (69-171)||(1657244-1657346)
chr3 (71-128)||(33714861-33714918)
chr3 (84-124)||(36811046-36811086)
[»] chr6 (26 HSPs)
chr6 (48-171)||(6432154-6432277)
chr6 (49-171)||(6409999-6410121)
chr6 (15-171)||(6394857-6395013)
chr6 (15-169)||(6402855-6403009)
chr6 (49-171)||(6415959-6416081)
chr6 (16-169)||(7119152-7119305)
chr6 (16-169)||(7131630-7131783)
chr6 (51-171)||(6423210-6423330)
chr6 (15-171)||(11936225-11936381)
chr6 (15-171)||(11948205-11948361)
chr6 (50-150)||(6589308-6589408)
chr6 (64-180)||(9411339-9411455)
chr6 (52-203)||(6585224-6585375)
chr6 (49-156)||(12102274-12102381)
chr6 (81-158)||(28935055-28935132)
chr6 (52-168)||(6594593-6594709)
chr6 (53-157)||(6596916-6597020)
chr6 (69-169)||(6603206-6603306)
chr6 (52-171)||(7994169-7994288)
chr6 (71-169)||(14802331-14802429)
chr6 (15-180)||(6426495-6426660)
chr6 (79-169)||(10579750-10579840)
chr6 (52-170)||(14820687-14820805)
chr6 (52-115)||(9410751-9410814)
chr6 (29-171)||(19632432-19632574)
chr6 (69-169)||(6586114-6586214)
[»] chr2 (3 HSPs)
chr2 (71-171)||(45245091-45245191)
chr2 (69-169)||(32785776-32785876)
chr2 (92-168)||(1037691-1037767)
[»] chr5 (6 HSPs)
chr5 (72-171)||(37937880-37937979)
chr5 (69-202)||(32267437-32267570)
chr5 (72-169)||(41901542-41901639)
chr5 (52-180)||(41889541-41889669)
chr5 (55-171)||(20478072-20478188)
chr5 (71-169)||(38267562-38267660)
[»] chr1 (6 HSPs)
chr1 (52-169)||(19468486-19468603)
chr1 (69-163)||(52082582-52082676)
chr1 (98-168)||(7554484-7554554)
chr1 (74-171)||(9586632-9586729)
chr1 (69-165)||(52092776-52092872)
chr1 (92-180)||(43634891-43634979)
[»] chr7 (2 HSPs)
chr7 (15-171)||(10614586-10614742)
chr7 (16-171)||(15092102-15092257)
[»] scaffold0041 (1 HSPs)
scaffold0041 (56-172)||(39176-39285)
[»] scaffold0014 (1 HSPs)
scaffold0014 (79-181)||(88822-88924)
[»] scaffold0295 (1 HSPs)
scaffold0295 (92-165)||(651-724)
[»] scaffold0807 (1 HSPs)
scaffold0807 (69-157)||(1468-1559)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 1548373 - 1548562
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactt-ggactgaactttgaaattcccaaactggaggtgttgaacttgtcacata 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548373 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacata 1548472  T
Q  114 caagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgcacttgttactaaaacgttgtaaaaatatcacag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  1548473 caagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacag 1548562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 1552714 - 1552883
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaa---aagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcaca 111  Q
    ||||||||||||| ||||||||||| | |||||| |   ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  1552714 gtaagattagacatttgaacttagcccatagttttatagaagggaagctacttggactgaactttgaaattcccaaactggaagtgttgaatttgtcaca 1552813  T
Q  112 tacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgcacttgttacta 181  Q
    ||||| |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||    
T  1552814 tacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggcttttgcagctgttacta 1552883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 1524485 - 1524592
Alignment:
Q  64 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtggg 163  Q
    |||| ||||||||||| |||||||  ||||||||||||| ||||||| ||||||| ||||||||||||||||| || |||||||| ||||||||||||||    
T  1524485 tggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtggg 1524584  T
Q  164 cttttgca 171  Q
    ||||||||    
T  1524585 cttttgca 1524592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 8187095 - 8187206
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||  |||  || |||||||||||| ||||||||||    
T  8187095 tgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggctttt 8187194  T
Q  169 gcacttgttact 180  Q
    ||| ||||||||    
T  8187195 gcagttgttact 8187206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 547025 - 546897
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    |||||| ||| ||||| ||||||||||| |||| ||| |||||||| |||||||||||| ||||| | |  |||||||||||||| ||||||||||||||    
T  547025 agtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaag 546926  T
Q  152 agttgtcgtgggcttttgcacttgttact 180  Q
    |||||| ||||||||||| | ||||||||    
T  546925 agttgttgtgggcttttggaattgttact 546897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 1513411 - 1513513
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||||| |||||||||| || |||||||||||||||  ||||| | ||||||||||||||||| | || ||||||||| ||||||||||||||||    
T  1513411 tgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggctttt 1513510  T
Q  169 gca 171  Q
    |||    
T  1513511 gca 1513513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 553628 - 553472
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    |||| |||||||| ||||||||| | ||  ||| || ||||||| ||| |  | |||||||| || ||| |||||||||||||||||||||||||  |||    
T  553628 gtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtgttgaacttgtcatttac 553529  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |||  ||||||||||| |||| |||||||| ||||||||||||  ||||||||||||    
T  553528 aagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgca 553472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 12121461 - 12121563
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||||| |||||||||| || ||||||||||||||| |||||| | |||||||||||||||||   || ||||||||| |||| |||||||||||    
T  12121461 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggctttt 12121560  T
Q  169 gca 171  Q
    |||    
T  12121561 gca 12121563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 8184034 - 8184134
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||||  ||||||||  | ||||| |||  ||||||||||||||| ||||||||||    
T  8184034 tgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggctttt 8184133  T
Q  169 g 169  Q
    |    
T  8184134 g 8184134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 532301 - 532186
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    |||||| ||||||||| ||||||||||| | ||||| || |||||||||||||||||| ||||||  |||||||||||||  ||  |||||| |||||||    
T  532301 agtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacctcaaag 532202  T
Q  152 agttgtcgtgggcttt 167  Q
    | |||||||| |||||    
T  532201 aattgtcgtgagcttt 532186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 558592 - 558493
Alignment:
Q  70 gaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttg 169  Q
    |||||||||| || |||| || | ||||||||||||||||   |||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  558592 gaactttgaagttgccaacctaggggtgttgaacttgtcattaacatatattgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttg 558493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 1519146 - 1519227
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaa 150  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||  |||||||  || ||||| |||||||||||||    
T  1519146 tgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 3438516 - 3438680
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    ||||||||||||| |||||||||||| || |||||  ||||||  |   || | ||||||||||  || | ||| ||||||| |||| ||||||||||||    
T  3438516 gtaagattagacatttgaacttagctggttgtttaggagtgaatttgtgtgcaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatac 3438615  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgcacttgttact 180  Q
    |||  |||||||| ||| |||| |||| ||||||||||||||| |||||||||||||  |||||||    
T  3438616 aagagttgatgat-aaatactccatgtaatctcaaagagttgttgtgggcttttgcaactgttact 3438680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 1508021 - 1508109
Alignment:
Q  83 cccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |||||||| || |||||||||||||||||||| | | ||||||||||||||||   ||| ||||||||| |||||||||||||||||||    
T  1508021 cccaaactagaagtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgca 1508109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 1537757 - 1537873
Alignment:
Q  55 gaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagt 154  Q
    |||||| | |||| ||||||||||| |||||||||| || ||||||||||||||| |||||| | || ||||  |||||||   ||| ||||||||| ||    
T  1537757 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 1537856  T
Q  155 tgtcgtgggcttttgca 171  Q
    |||||||||||||||||    
T  1537857 tgtcgtgggcttttgca 1537873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 55908755 - 55908831
Alignment:
Q  92 gaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    |||||||| ||||||||||||||| || ||||||||||||||||| || |||||||||||| |||| ||||||||||    
T  55908755 gaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 55908831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 570466 - 570335
Alignment:
Q  49 aaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctca 148  Q
    ||||||||| || | |||| ||||||||||| ||| |||||| |||||||||||||||||| ||||| |  ||||| | |||  |||| || |||| |||    
T  570466 aaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttca 570367  T
Q  149 aagagttgtcgtgggcttttgcacttgttact 180  Q
    ||||||||||| |||||||||||  |||||||    
T  570366 aagagttgtcgcgggcttttgcaactgttact 570335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 641020 - 640899
Alignment:
Q  59 ctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtc 158  Q
    ||||||||| |||| |||||| | || | | |||||||||||||||||||| ||||||   ||||||||||||||||| | |||| |||||||| ||| |    
T  641020 ctacttggaatgaaatttgaactaccaatattggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgcc 640921  T
Q  159 gtgggcttttgcacttgttact 180  Q
    |||| ||||||||  |||||||    
T  640920 gtggtcttttgcatctgttact 640899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 659799 - 659726
Alignment:
Q  74 tttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaa 149  Q
    |||||| |||||||||| ||||||||||||||||||||||||||| || || ||||||||||  ||||||||||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacatacaagtgttaataatgaaacact--atgtgatctcaa 659726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 7307955 - 7307844
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    |||||||| || |||||||| ||||||| |||||||||||| |||||    ||||||||||| ||||   | ||||||||||||||||| || |||||||    
T  7307955 tgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctttt 7307856  T
Q  169 gcacttgttact 180  Q
    |||| |||||||    
T  7307855 gcacctgttact 7307844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 55505095 - 55505221
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    |||||| ||| ||||| ||||||||  | | ||| |||| |||||||||||||||||| ||||||   |||| |||| ||||||  |||||| |||||||    
T  55505095 agtgaacctaattggaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaag 55505194  T
Q  152 agttgtcgtgggcttttgcacttgtta 178  Q
    | ||||||||| |||||||| ||||||    
T  55505195 aattgtcgtggacttttgcatttgtta 55505221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 12116602 - 12116648
Alignment:
Q  92 gaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaa 138  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  12116602 gaggtgttgaacttgtcacatacaagtgttgatgatgaatcactcaa 12116648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 1600563 - 1600447
Alignment:
Q  20 attagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagta 119  Q
    |||||||| ||||||||||| |   ||| || | ||||||| |  ||| ||||||||||| |||  |||||||||||||||||||||||| |||||||      
T  1600563 attagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaaggg 1600464  T
Q  120 ttgatgatgaaacactc 136  Q
    |||| |||||| |||||    
T  1600463 ttgacgatgaagcactc 1600447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 53761759 - 53761876
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    |||||||||| ||||| ||||||||| | ||||||| || |||| |||||||||||||  ||| |   || | ||| ||||||||  ||||||||| |||    
T  53761759 agtgaagctaattggaatgaactttgtagttcccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactc--tgtgatctcgaag 53761856  T
Q  152 agttgtcgtgggcttttgca 171  Q
    | ||||||||||||||||||    
T  53761857 aattgtcgtgggcttttgca 53761876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 566233 - 566182
Alignment:
Q  120 ttgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    ||||||||||||||||| ||||||||||||||   |||||||||||||||||    
T  566233 ttgatgatgaaacactctatgtgatctcaaagtactgtcgtgggcttttgca 566182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 644979 - 644885
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtca 109  Q
    |||| |||||||| ||||| ||| ||||  ||| || | |||||||||||  | ||||||||||| |||||||||||||||||||  ||||||||    
T  644979 gtaacattagacatttgaatttaactcgctgttcaagactgaagctacttacattgaactttgaagttcccaaactggaggtgttagacttgtca 644885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 1489365 - 1489467
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||||| |||||||||| || ||||||||||||||| |||||| | || |  | ||||||||   ||| ||||||| | |||| |||||||||||    
T  1489365 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaacaacgaaacactgtgtgtaatctcaatgtgttgccgtgggctttt 1489464  T
Q  169 gca 171  Q
    |||    
T  1489465 gca 1489467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 7225887 - 7225989
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||||| ||| | || ||||||| ||||||||||||||||||||  |||||||  ||  |||   |||||| |||||||||||| |||| |||||    
T  7225887 tgaactttgaagttctcgaattggaggtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggactttt 7225986  T
Q  169 gca 171  Q
    |||    
T  7225987 gca 7225989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 1545868 - 1545802
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacact 135  Q
    |||||||| || |||| ||||||||||||||||||||||    ||||||  ||||||||||||||||    
T  1545868 tgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacact 1545802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 18315226 - 18315379
Alignment:
Q  18 agattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaag 117  Q
    ||||||||||||||||||||||||||  || || | ||||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||     
T  18315226 agattagacagttgaacttagctcgtgattcaagaatgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaa 18315325  T
Q  118 tattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
      ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  18315326 agttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggcttttgca 18315379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 32151412 - 32151294
Alignment:
Q  53 gtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaaga 152  Q
    |||||||| | |||| ||||||| ||| || |||| ||||||||||| |||||||||  ||||||  ||||||||||||||||| |||||||||||||||    
T  32151412 gtgaagctgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaaga 32151313  T
Q  153 gttgtcgtgggcttttgca 171  Q
    ||||| |||||||||||||    
T  32151312 gttgtagtgggcttttgca 32151294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 27922603 - 27922503
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||||| |||||||| |||||||||||||||||||| |||||| | ||||||||||| ||||  || ||||||||||||||||| ||||||||||    
T  27922603 tgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctttt 27922504  T
Q  169 g 169  Q
    |    
T  27922503 g 27922503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 17636405 - 17636512
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||||| |||||||| |||||||||||||||||||||| ||| |  |||| |||||| || |  ||||||||||||||||||||| | | |||||    
T  17636405 tgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgtcttagactttt 17636504  T
Q  169 gcacttgt 176  Q
    ||| ||||    
T  17636505 gcaattgt 17636512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 34936179 - 34936269
Alignment:
Q  81 ttcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |||| ||||| ||||||||| |||||||| |||||||  |||||||| |||||||| |||  ||| |||||||||||||||||||||||||    
T  34936179 ttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgca 34936269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 28246245 - 28246399
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    |||| |||||||| ||||| ||| ||||| ||| || | ||||||||| |  | ||||||||||| |||||||||||||||||||| ||||||||  |||    
T  28246245 gtaacattagacatttgaatttaactcgttgttcaagactgaagctacatacattgaactttgaagttcccaaactggaggtgttggacttgtcatttac 28246344  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |||  ||||  || || ||||| ||  |||||||||||||||| | |||||||||||    
T  28246345 aagagttga--ataaatcactctattggatctcaaagagttgtagcgggcttttgca 28246399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 21235658 - 21235542
Alignment:
Q  64 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtggg 163  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |  ||||| | |||  |||| || |||| |||||||| |||||  ||    
T  21235658 tggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgatttcaaagagctgtcgcagg 21235559  T
Q  164 cttttgcacttgttact 180  Q
    ||||||||  |||||||    
T  21235558 cttttgcaactgttact 21235542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 17628018 - 17628106
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgt 157  Q
    |||||||| || || | ||| ||||||||||||||||||||||||| ||  |||||||| || |||||  |||||||||||||| ||||    
T  17628018 tgaactttaaactttctaaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgt 17628106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 44736570 - 44736530
Alignment:
Q  129 aaacactcaatgtgatctcaaagagttgtcgtgggcttttg 169  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  44736570 aaacactcattgtgatctcaaagagttgttgtgggcttttg 44736530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 51113765 - 51113896
Alignment:
Q  49 aaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctca 148  Q
    |||| |||||||||||||| |||||||||||  ||||||||||||||||||  |||||||| ||||||   ||||||||||||||||| ||||||||||     
T  51113765 aaaactgaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcg 51113864  T
Q  149 aagagttgtcgtgggcttttgcacttgttact 180  Q
    ||||||||| |||||||||||||  |||||||    
T  51113865 aagagttgttgtgggcttttgcaactgttact 51113896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 51120843 - 51121004
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    |||| |||||||| ||||||||  |  || ||| || |||||| || | |||| ||||||||||| ||| |||| ||||||||||||||||||| |||||    
T  51120843 gtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatac 51120942  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgcacttgt 176  Q
    |||  |||||||||||| |||  |||| ||||||||||||||||||||||||||||| ||||    
T  51120943 aagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgt 51121004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 13470682 - 13470838
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    |||||||||| || |||||||||||   | ||  ||||||||||||||||||| |||||||||   ||||||| ||||||||||||||||||||| ||||    
T  13470682 gtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttgtcaaatac 13470781  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    ||   || ||||| |||||||| || |||||||||||| |||| |||||||||||||    
T  13470782 aaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgca 13470838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 51764427 - 51764546
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    |||||||||||||||| ||||||||| | |||| || |||||||||||  ||||||||  |||||   |||||||| |||||||| ||| ||||||||||    
T  51764427 agtgaagctacttggaatgaactttgcagttccgaagctggaggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaag 51764526  T
Q  152 agttgtcgtgggcttttgca 171  Q
    | |||| | |||||||||||    
T  51764527 aattgttgcgggcttttgca 51764546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 27005791 - 27005859
Alignment:
Q  84 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaaga 152  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||  ||||||  |||| ||||||||||    
T  27005791 ccaaactggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaaaga 27005859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 1657346 - 1657244
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||||| |||||||||||||||||||| ||||||||  ||||||  ||||  ||  | ||||| ||  |||||||||||||||  | ||||||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacaatatatcactctattggatctcaaagagttgcagcgggctttt 1657247  T
Q  169 gca 171  Q
    |||    
T  1657246 gca 1657244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 33714861 - 33714918
Alignment:
Q  71 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatg 128  Q
    ||||||||| || |||||||||||||| ||||||||||| |  |||| ||||||||||    
T  33714861 aactttgaagtttccaaactggaggtgctgaacttgtcaaactcaagaattgatgatg 33714918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 36811046 - 36811086
Alignment:
Q  84 ccaaactggaggtgttgaacttgtcacatacaagtattgat 124  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  36811046 ccaaactggaggtgttgaacttgtcccattcaagaattgat 36811086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 6432277 - 6432154
Alignment:
Q  48 taaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctc 147  Q
    ||||||||||||||| |||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||||  ||||||||||||||||  |||||||||     
T  6432277 taaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatctt 6432178  T
Q  148 aaagagttgtcgtgggcttttgca 171  Q
    ||||| |||| |||||||| ||||    
T  6432177 aaagaattgttgtgggcttctgca 6432154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 6410121 - 6409999
Alignment:
Q  49 aaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctca 148  Q
    |||||||||||||| |||| ||||||||||| ||||||| ||| |||||||||||| |||| |||||||  ||||||||||||| ||  |||||||||||    
T  6410121 aaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctca 6410022  T
Q  149 aagagttgtcgtgggcttttgca 171  Q
    |||| |||| || ||||||||||    
T  6410021 aagaattgttgtcggcttttgca 6409999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 6395013 - 6394857
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    ||||| ||| ||| ||||||||||||    ||| ||||||||| |||| |||| ||||||||| | ||||| | ||||||||||||||||||||| ||||    
T  6395013 gtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatac 6394914  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |||  ||||||||||||| ||   |||||||||||||| |||| |||||||||||||    
T  6394913 aagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgca 6394857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 6403009 - 6402855
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    |||| ||||| || ||||||||| || |  ||| || |||||||||||||||| | ||||||| | ||||| |||| || ||||||||||||||| ||||    
T  6403009 gtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaagtgttgaacttgtcagatac 6402910  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttg 169  Q
     |   ||||||||||||||||| ||||||||||||||| |||| |||||||||||    
T  6402909 gaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttg 6402855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 6416081 - 6415959
Alignment:
Q  49 aaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctca 148  Q
    |||||||||||||| |||| || |||||| | ||||||| ||||||||||||||||||||| ||||||   || ||||| |||| ||| |||||||||||    
T  6416081 aaaagtgaagctacatggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctca 6415982  T
Q  149 aagagttgtcgtgggcttttgca 171  Q
    |||| |||| | |||||||||||    
T  6415981 aagaattgtagcgggcttttgca 6415959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 7119305 - 7119152
Alignment:
Q  16 taagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 115  Q
    |||||||| ||| ||||||||||| |   ||| || |||||||||||||||| |||||||||   ||| | | ||||||||||||||||||||| ||||     
T  7119305 taagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcagatacg 7119206  T
Q  116 agtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttg 169  Q
    |   ||||||||||||||||| |||||||||| |||| |||| | |||||||||    
T  7119205 aaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttg 7119152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 7131783 - 7131630
Alignment:
Q  16 taagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 115  Q
    |||||||| ||| ||||||||||| |   ||| || |||||||||||||||| |||||||||   ||| | | ||||||||||||||||||||| ||||     
T  7131783 taagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcagatacg 7131684  T
Q  116 agtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttg 169  Q
    |   ||||||||||||||||| |||||||||| |||| |||| | |||||||||    
T  7131683 aaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttg 7131630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 6423330 - 6423210
Alignment:
Q  51 aagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaa 150  Q
    |||||||||||| || | |||||||| || ||||||| ||||||||||||||||||||| |||||||  ||   ||| |||||||| ||| |||||||||    
T  6423330 aagtgaagctacgtgcaatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaa 6423231  T
Q  151 gagttgtcgtgggcttttgca 171  Q
    ||||||| ||||| |||||||    
T  6423230 gagttgttgtgggattttgca 6423210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 11936225 - 11936381
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    |||| |||||||| ||||| ||| ||||  ||| || | ||||||||| |  | ||||||||||| |||||||||||||||||||| ||||||||  |||    
T  11936225 gtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttac 11936324  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |||  |||| ||| || ||||| ||  |||||||||||||||| |||||||||||||    
T  11936325 aagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgca 11936381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 11948205 - 11948361
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    |||| |||||||| ||||| ||| ||||  ||| || | ||||||||| |  | ||||||||||| |||||||||||||||||||| ||||||||  |||    
T  11948205 gtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttac 11948304  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |||  |||| ||| || ||||| ||  |||||||||||||||| |||||||||||||    
T  11948305 aagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgca 11948361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 6589308 - 6589408
Alignment:
Q  50 aaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaa 149  Q
    |||||||||||||||||| ||||||||| | ||||||  ||||||||||||||||||||| |||||| | || ||||| |||||||  || |||||||||    
T  6589308 aaagtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaa 6589407  T
Q  150 a 150  Q
    |    
T  6589408 a 6589408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 9411455 - 9411339
Alignment:
Q  64 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtggg 163  Q
    |||| ||||||||||  ||||||| ||||||||||||||||||||| ||||| || ||   ||||||| |||| ||| ||||||||||| |||||||||     
T  9411455 tggattgaactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtgga 9411356  T
Q  164 cttttgcacttgttact 180  Q
    ||||||||  |||||||    
T  9411355 cttttgcaactgttact 9411339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 6585224 - 6585375
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    |||||||||||||||| | ||||||  | || || |  ||||||| |||||||||||| ||||||   ||||||||||||||||| ||||||||||||||    
T  6585224 agtgaagctacttggaataaactttttagttacccagttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaag 6585323  T
Q  152 agttgtcgtgggcttttgcacttgttactaaaacgttgtaaaaatatcacag 203  Q
    ||||||  || ||||||| |  | ||||| ||| ||||| ||||| ||||||    
T  6585324 agttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacag 6585375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 12102381 - 12102274
Alignment:
Q  49 aaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctca 148  Q
    ||||||||| || | |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |  ||||| | |||  |||| || |||| |||    
T  12102381 aaaagtgaaactgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttca 12102282  T
Q  149 aagagttg 156  Q
    ||||||||    
T  12102281 aagagttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 28935132 - 28935055
Alignment:
Q  81 ttcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtc 158  Q
    ||||| |||| ||||||||||||||||||||||||||  |||| |||||| |||||| |||||| |||||||||||||    
T  28935132 ttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 28935055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 6594593 - 6594709
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    ||||||||||| |||| | ||||||  | |||||||||||||||||||| |||||||| |||||    |||||||||| |||||   |||||||||||||    
T  6594593 agtgaagctacatggaataaactttttagttcccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaag 6594692  T
Q  152 agttgtcgtgggctttt 168  Q
    | |||| ||||||||||    
T  6594693 aattgttgtgggctttt 6594709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 6596916 - 6597020
Alignment:
Q  53 gtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaaga 152  Q
    ||||||| ||||| | | ||||||||||||||| | |||||||||||||||||||||  ||||| | ||||||||||||||||| | |  ||||||||||    
T  6596916 gtgaagcgacttgaaataaactttgaaattccccagctggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaaga 6597015  T
Q  153 gttgt 157  Q
     ||||    
T  6597016 attgt 6597020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 6603206 - 6603306
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||| | ||||||| ||  |||||||| ||||| || ||||| || |||||||||||||| || ||| ||||||||||||||||| |||||||||    
T  6603206 tgaactttgtacttcccaagctacaggtgttggacttggcagatacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggctttt 6603305  T
Q  169 g 169  Q
    |    
T  6603306 g 6603306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 7994169 - 7994288
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    |||||||||||| ||| ||||||||| | |||| || || |||||||||||| ||||| |||||||  || |||| ||||||||  ||||||||||||||    
T  7994169 agtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaag 7994268  T
Q  152 agttgtcgtgggcttttgca 171  Q
    | ||||  ||| ||||||||    
T  7994269 aattgttctggacttttgca 7994288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 14802429 - 14802331
Alignment:
Q  71 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttg 169  Q
    ||||||||| |||||||  |||| |||||||| |||||| ||||||   ||||||||||||||||| ||||||| ||||||| |||| |||| ||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtggtcttttg 14802331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 6426660 - 6426495
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    ||||| ||| ||| ||||||||||||    ||| ||| ||||| |||| |||| ||||||||| | ||||| | |||||||||||||| |||||| | ||    
T  6426660 gtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtcaaacac 6426561  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgcacttgttact 180  Q
    ||| ||||||||||||||  |  ||| ||||||||||| |||| || || ||||||| || |||||    
T  6426560 aagcattgatgatgaaactttttatgcgatctcaaagaattgttgtcggattttgcaattattact 6426495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 10579750 - 10579840
Alignment:
Q  79 aattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttg 169  Q
    ||||||| | ||||||||||||||||||||| ||||||   |||||||| |||||||| ||  ||||||||||| |||| || ||||||||    
T  10579750 aattccccagctggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttg 10579840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 14820805 - 14820687
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    |||||| |||| |||| | ||||||| | |||||||  | |||||||||||||| ||| ||||||   ||||| ||||||||||  || ||||||| |||    
T  14820805 agtgaaactacatggaattaactttgcagttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaag 14820706  T
Q  152 agttgtcgtgggcttttgc 170  Q
    | |||| ||||||||||||    
T  14820705 aattgttgtgggcttttgc 14820687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 9410814 - 9410751
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 115  Q
    ||||||| || ||||| |||||||||||  ||||||  ||||||||||||| ||||||||||||    
T  9410814 agtgaagttaattggattgaactttgaagctcccaagttggaggtgttgaatttgtcacataca 9410751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 19632574 - 19632432
Alignment:
Q  29 ttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatg 128  Q
    ||||||||| ||||  ||| || ||| || ||||||||| | ||||||  | ||||||| || ||||||||| |||||||  ||||||   |||||||||    
T  19632574 ttgaacttaactcgatgttcaatagttaacctacttggaataaactttctagttcccaagctagaggtgttggacttgtcgtatacaaaggttgatgatg 19632475  T
Q  129 aaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |   |||   |||||||||||||| |||| |||||||||||||    
T  19632474 agcaactttttgtgatctcaaagaattgttgtgggcttttgca 19632432  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 6586114 - 6586214
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||| | ||||||| || ||||||||| | |||||| | |||  | || ||||||||||||||  || ||||||||||| ||||| | |||||||    
T  6586114 tgaactttgtacttcccaagctagaggtgttggatttgtcaaaaacagatgttcatgatgaaacactctgtgcgatctcaaagatttgtcctaggctttt 6586213  T
Q  169 g 169  Q
    |    
T  6586214 g 6586214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 45245091 - 45245191
Alignment:
Q  71 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgc 170  Q
    ||||||||| |||| ||||| ||||||||||| |||||| | ||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45245091 aactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgc 45245190  T
Q  171 a 171  Q
    |    
T  45245191 a 45245191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 32785776 - 32785876
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    |||||||| ||  ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||  ||||||||||||  |||| || |||||||||    
T  32785776 tgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggctttt 32785875  T
Q  169 g 169  Q
    |    
T  32785876 g 32785876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 1037691 - 1037767
Alignment:
Q  92 gaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    |||||||| ||||||||||||||| || ||||||||||||||||| || |||||||||||| |||| ||||||||||    
T  1037691 gaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 1037767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 37937979 - 37937880
Alignment:
Q  72 actttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |||||||| ||||||| || ||||||||| ||||| |||||||||| ||||||||| |||||||| |||| ||||||||||  |||||||||||||||||    
T  37937979 actttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgca 37937880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 32267570 - 32267437
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    ||||||||||| |||||||| ||||||| |||||||||||||| ||||   ||||||||||| ||||  || ||||||||||||||||| ||||||||||    
T  32267570 tgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggctttt 32267471  T
Q  169 gcacttgttactaaaacgttgtaaaaatatcaca 202  Q
    | | |||| ||| |||  ||||||  ||||||||    
T  32267470 gaaattgtcacttaaaaattgtaatgatatcaca 32267437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 41901542 - 41901639
Alignment:
Q  72 actttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttg 169  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||   ||||||||||| ||||  || ||||||||||||||||| |||| ||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttg 41901639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 180
Target Start/End: Original strand, 41889541 - 41889669
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    |||||||||||||| | |||||||| || |||||||| |||||||||||||||| ||| ||||||   ||||||||||||||||  ||  ||||||||||    
T  41889541 agtgaagctacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaag 41889640  T
Q  152 agttgtcgtgggcttttgcacttgttact 180  Q
    |||||| | ||||||| | | ||||||||    
T  41889641 agttgttgcgggctttcgaaattgttact 41889669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 20478072 - 20478188
Alignment:
Q  55 gaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagt 154  Q
    ||||||||||||| | ||| ||| ||||||| | ||||||||||||||||||||| |||||| | ||||||| |||||| |   ||||||||||| || |    
T  20478072 gaagctacttggaataaacgttgtaattccccagctggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaat 20478171  T
Q  155 tgtcgtgggcttttgca 171  Q
    ||| |||||||||||||    
T  20478172 tgttgtgggcttttgca 20478188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 38267562 - 38267660
Alignment:
Q  71 aactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttg 169  Q
    ||||||||| ||||||| || ||||||||| ||||| ||||||||||  |||||||||| |||||| |||| ||||||||||  || ||||||||||||    
T  38267562 aactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggcttttg 38267660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 19468486 - 19468603
Alignment:
Q  52 agtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaag 151  Q
    |||||| ||||||||| ||||||||| | ||||||| |||||||||||||| |||||| ||||||   ||||||||||||||||  ||||||||||||||    
T  19468486 agtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaag 19468585  T
Q  152 agttgtcgtgggcttttg 169  Q
    |  ||| |||| ||||||    
T  19468586 aactgttgtggacttttg 19468603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 52082676 - 52082582
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtggg 163  Q
    |||||||| || || ||||| |||||||||||||||||||| | ||||  ||||||||||||||| |  |||||||||||||||||||| |||||    
T  52082676 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 52082582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 7554554 - 7554484
Alignment:
Q  98 ttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggctttt 168  Q
    |||||||| ||| |||||||| ||||||||||| ||||| || ||||||||||||||||| |||| |||||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggactttt 7554484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 9586729 - 9586632
Alignment:
Q  74 tttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |||||| | ||||| || |||||||||||||||||| |||||  | || |||||||||||||  |||||| ||||| || ||||||||| ||||||||    
T  9586729 tttgaagtccccaagctagaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaatgaattgtcgtggacttttgca 9586632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 52092872 - 52092776
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggct 165  Q
    |||||||| || || ||||| ||||||||||||||||| || | ||||  ||||||||||| ||| |  |||||||||||||||||| | |||||||    
T  52092872 tgaactttcaagtttccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgggct 52092776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 43634979 - 43634891
Alignment:
Q  92 gaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgcacttgttact 180  Q
    |||| ||||||||||||| ||||||   |||| |||| ||||||  |||||| |||||||| ||||||||| |||||| | ||||||||    
T  43634979 gaggcgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtggacttttgaatttgttact 43634891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 10614742 - 10614586
Alignment:
Q  15 gtaagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatac 114  Q
    |||||||||| || |||||||||||   | ||  ||||||||||||||||||| ||||| |||   ||||||| ||||||||||||||||||||| ||||    
T  10614742 gtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtcaaatac 10614643  T
Q  115 aagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
     |   || ||||| |||||||| |||||||||| ||||  ||| |||||||||||||    
T  10614642 gaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgca 10614586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 15092102 - 15092257
Alignment:
Q  16 taagattagacagttgaacttagctcgtagtttaaaagtgaagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacataca 115  Q
    |||| ||| ||| ||||||||| || |  ||||||  ||||| |||| |||| ||||||||| | ||||| | |||||||||||||| |||||| | |||    
T  15092102 taagcttaaacatttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtcagaaaca 15092201  T
Q  116 agtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgca 171  Q
    |   || ||||| |||||||| ||| ||||||||||| |||| |||||||||||||    
T  15092202 aaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgca 15092257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 39285 - 39176
Alignment:
Q  56 aagctacttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagtt 155  Q
    |||||||||||| |||||||||||||       || ||||||||||||||| ||  |||||   || |||||||||||||  ||||||||||||||||||    
T  39285 aagctacttggattgaactttgaaat-------ctcgaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagtt 39193  T
Q  156 gtcgtgggcttttgcac 172  Q
    || ||||||||||||||    
T  39192 gtagtgggcttttgcac 39176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 88924 - 88822
Alignment:
Q  79 aattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggcttttgcacttgtta 178  Q
    ||||| |||||||||||| ||||||||||||   ||||  || || |||||| ||||| |||||||||||||||| |||| |||||||||||| |||| |    
T  88924 aattcacaaactggaggtattgaacttgtcaagaacaatcatagacgatgaagcactccatgtgatctcaaagaggtgtcatgggcttttgcaattgtaa 88825  T
Q  179 cta 181  Q
    |||    
T  88824 cta 88822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 651 - 724
Alignment:
Q  92 gaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgtcgtgggct 165  Q
    |||||||| |||||||||||||||||| | ||||||||||||||| || ||||||| |||| |||| |||||||    
T  651 gaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggct 724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 1468 - 1559
Alignment:
Q  69 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgat---gatgaaacactcaatgtgatctcaaagagttgt 157  Q
    ||||||||| | |||| || || ||||||||| |||||||| |||||| | |||||   |||||||||||| ||||||||||||||| ||||    
T  1468 tgaactttgtagttcctaagctagaggtgttggacttgtcaaatacaaatgttgatgatgatgaaacactctatgtgatctcaaagaattgt 1559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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