View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12154_high_3 (Length: 391)
Name: NF12154_high_3
Description: NF12154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12154_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 32135273 - 32134910
Alignment:
| Q |
19 |
actacactaaattaaattcttcattcttctttcttacaaccaaagtatcctcctaaaacgatgtcgtttccgtgtgactattgcgacacaagaagcgcgg |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32135273 |
actatactaaattaaattcttcattcttctttcttacaaccaaagtatcctcctaaaacgatgtcgtttccgtgtgactattgcgacacaagaagcgcgg |
32135174 |
T |
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| Q |
119 |
tgctatattgcaaaccagactccgcgaaactctgtttagtttgcgaccagcacgtgcactccgcaaacgcactcgcactcaagcacgtgcgtttccaaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32135173 |
tgctatattgcaaaccagactccgcgaaactctgtttagtttgcgaccagcacgtgcactccgcaaacgcactcgcactcaagcacgtgcgtttccaaat |
32135074 |
T |
|
| Q |
219 |
ctgtcaaaactgcaaaaacgacgccgcttcagttcgttgcttcaccgaaaacctagttcaatgtcaccgctgcgattggaactctcacggcggcgacga- |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32135073 |
ctgtcaaaactgcaaaaacgacgccgcttcagttcgttgcttcaccgaaaacctagttcaatgtcaccgctgcgattggaactctcacggcggcgacgac |
32134974 |
T |
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| Q |
318 |
--cgactccacctcttcatctttccaccaccacaaccgccgccgtattgaaggtctcacaggtt |
379 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32134973 |
gacgactccacctcttcatccttccaccaccacaaccgccgccgtattgaaggtctcaccggtt |
32134910 |
T |
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