View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12154_low_4 (Length: 388)

Name: NF12154_low_4
Description: NF12154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12154_low_4
NF12154_low_4
[»] chr3 (23 HSPs)
chr3 (24-185)||(25253122-25253283)
chr3 (230-373)||(25252934-25253077)
chr3 (268-373)||(39471054-39471159)
chr3 (266-373)||(32688619-32688726)
chr3 (277-370)||(33895979-33896072)
chr3 (249-358)||(19561363-19561472)
chr3 (293-370)||(30740795-30740872)
chr3 (328-372)||(20407785-20407829)
chr3 (263-373)||(7521710-7521820)
chr3 (259-366)||(12710126-12710234)
chr3 (304-366)||(15823191-15823253)
chr3 (260-373)||(38644192-38644304)
chr3 (266-350)||(54432864-54432948)
chr3 (266-373)||(20661735-20661842)
chr3 (293-373)||(5418103-5418183)
chr3 (260-373)||(7834117-7834232)
chr3 (289-373)||(39943728-39943812)
chr3 (290-373)||(7029195-7029277)
chr3 (266-373)||(40942955-40943061)
chr3 (266-320)||(23206910-23206964)
chr3 (260-366)||(52198843-52198949)
chr3 (342-371)||(27040593-27040622)
chr3 (340-373)||(39133838-39133871)
[»] chr6 (12 HSPs)
chr6 (24-185)||(12428285-12428446)
chr6 (230-373)||(12428103-12428246)
chr6 (266-373)||(10346272-10346379)
chr6 (268-373)||(7957114-7957219)
chr6 (250-370)||(3082288-3082408)
chr6 (293-373)||(22295416-22295496)
chr6 (266-373)||(13311408-13311515)
chr6 (266-373)||(33109892-33109999)
chr6 (289-373)||(18961905-18961989)
chr6 (265-363)||(25181137-25181235)
chr6 (250-370)||(7436763-7436882)
chr6 (260-359)||(472900-472999)
[»] chr5 (28 HSPs)
chr5 (250-370)||(10493437-10493557)
chr5 (289-373)||(39407041-39407125)
chr5 (289-373)||(39408779-39408863)
chr5 (289-373)||(26299506-26299590)
chr5 (285-373)||(1840969-1841057)
chr5 (289-373)||(34720059-34720143)
chr5 (289-373)||(27450986-27451070)
chr5 (305-373)||(34857006-34857074)
chr5 (266-373)||(18879680-18879787)
chr5 (266-373)||(41782754-41782861)
chr5 (263-373)||(27195483-27195593)
chr5 (292-373)||(19715833-19715913)
chr5 (292-373)||(26297965-26298046)
chr5 (293-373)||(32157385-32157465)
chr5 (262-373)||(19283554-19283664)
chr5 (266-373)||(27905540-27905647)
chr5 (305-373)||(3805385-3805453)
chr5 (293-373)||(26217483-26217563)
chr5 (289-373)||(34724035-34724119)
chr5 (266-373)||(4983938-4984045)
chr5 (290-373)||(5385086-5385169)
chr5 (262-373)||(40057779-40057891)
chr5 (285-373)||(28430609-28430698)
chr5 (266-362)||(1224635-1224731)
chr5 (266-369)||(11136636-11136739)
chr5 (292-373)||(43385858-43385940)
chr5 (266-350)||(29322134-29322218)
chr5 (289-349)||(38523253-38523313)
[»] chr1 (22 HSPs)
chr1 (259-373)||(24575360-24575474)
chr1 (268-373)||(37441788-37441893)
chr1 (289-373)||(32179393-32179477)
chr1 (266-373)||(36418580-36418687)
chr1 (266-373)||(43090005-43090112)
chr1 (260-349)||(14578998-14579087)
chr1 (266-373)||(15257819-15257926)
chr1 (260-373)||(7994806-7994918)
chr1 (293-370)||(29678104-29678181)
chr1 (285-366)||(31868956-31869037)
chr1 (266-350)||(24470499-24470583)
chr1 (285-373)||(44595884-44595971)
chr1 (290-373)||(3576998-3577081)
chr1 (259-373)||(5205075-5205190)
chr1 (266-373)||(7955709-7955816)
chr1 (289-350)||(38061586-38061647)
chr1 (293-373)||(13645716-13645796)
chr1 (289-332)||(42936598-42936641)
chr1 (260-373)||(46265575-46265686)
chr1 (312-373)||(38061638-38061699)
chr1 (260-316)||(15662407-15662463)
chr1 (341-373)||(28005795-28005827)
[»] chr7 (25 HSPs)
chr7 (268-373)||(22074621-22074726)
chr7 (266-373)||(37333757-37333865)
chr7 (266-373)||(42071580-42071687)
chr7 (259-373)||(17025963-17026078)
chr7 (266-373)||(36926469-36926576)
chr7 (260-373)||(10618081-10618194)
chr7 (266-373)||(26215777-26215884)
chr7 (263-373)||(18250616-18250726)
chr7 (266-373)||(3931321-3931429)
chr7 (266-373)||(666189-666296)
chr7 (290-373)||(5776562-5776645)
chr7 (260-366)||(222910-223016)
chr7 (289-373)||(43052342-43052426)
chr7 (268-359)||(8110833-8110924)
chr7 (266-373)||(45054853-45054960)
chr7 (289-373)||(7539647-7539731)
chr7 (266-366)||(49035038-49035138)
chr7 (262-373)||(33899574-33899685)
chr7 (266-350)||(388498-388582)
chr7 (289-373)||(7443889-7443973)
chr7 (260-363)||(8390105-8390208)
chr7 (290-373)||(36471864-36471946)
chr7 (291-373)||(41449207-41449289)
chr7 (289-350)||(5795502-5795563)
chr7 (266-350)||(15433700-15433784)
[»] chr4 (26 HSPs)
chr4 (289-373)||(49820438-49820522)
chr4 (266-373)||(9469487-9469594)
chr4 (290-373)||(48977064-48977147)
chr4 (266-372)||(19850193-19850299)
chr4 (266-366)||(28266717-28266817)
chr4 (266-373)||(50605515-50605622)
chr4 (266-373)||(53369122-53369229)
chr4 (266-373)||(51409087-51409194)
chr4 (265-366)||(43386601-43386702)
chr4 (261-373)||(44377665-44377777)
chr4 (260-366)||(52813066-52813172)
chr4 (289-373)||(21436367-21436451)
chr4 (266-362)||(36543365-36543461)
chr4 (266-373)||(52705653-52705760)
chr4 (295-373)||(1803227-1803305)
chr4 (259-368)||(12673633-12673743)
chr4 (259-373)||(46945141-46945255)
chr4 (304-373)||(51994143-51994212)
chr4 (332-368)||(5765250-5765286)
chr4 (332-368)||(5767494-5767530)
chr4 (289-373)||(24009426-24009510)
chr4 (266-350)||(44792766-44792850)
chr4 (289-373)||(50240890-50240974)
chr4 (260-366)||(22183830-22183936)
chr4 (260-373)||(54625745-54625855)
chr4 (332-368)||(5769795-5769831)
[»] chr2 (15 HSPs)
chr2 (266-373)||(41958607-41958714)
chr2 (266-373)||(36538137-36538244)
chr2 (291-373)||(12139426-12139508)
chr2 (262-367)||(40458398-40458503)
chr2 (289-373)||(20986124-20986208)
chr2 (260-366)||(3409816-3409922)
chr2 (297-373)||(29804323-29804399)
chr2 (266-373)||(2647573-2647680)
chr2 (266-373)||(27633202-27633309)
chr2 (260-366)||(44741263-44741369)
chr2 (333-373)||(40675225-40675265)
chr2 (260-332)||(20204355-20204427)
chr2 (279-373)||(39801181-39801275)
chr2 (261-350)||(33830961-33831050)
chr2 (266-350)||(33164537-33164621)
[»] scaffold0316 (1 HSPs)
scaffold0316 (266-373)||(18770-18877)
[»] chr8 (7 HSPs)
chr8 (266-373)||(43966942-43967049)
chr8 (289-373)||(11161138-11161222)
chr8 (291-370)||(9413262-9413341)
chr8 (243-366)||(22563325-22563448)
chr8 (268-368)||(12377786-12377886)
chr8 (340-373)||(17865721-17865754)
chr8 (340-373)||(22930896-22930929)
[»] scaffold0444 (1 HSPs)
scaffold0444 (261-373)||(1381-1493)
[»] scaffold0106 (1 HSPs)
scaffold0106 (328-373)||(26553-26598)
[»] scaffold0025 (1 HSPs)
scaffold0025 (333-366)||(4745-4778)
[»] scaffold0043 (1 HSPs)
scaffold0043 (292-368)||(16557-16632)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 25253283 - 25253122
Alignment:
Q  24 aacttcattgtacctaaattatattttagtaccatgctattttaacttaacagcgctgggtcaaataattatattttagtacccaaattataatttgtta 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25253283 aacttcattgtacctaaattatattttagtaccatgctattttaacttaacagcgctgggtcaaataattatattttagtaccaaaattataatttgtta 25253184  T
Q  124 tttttgtattcagcacaaatttgtgtttgagatcttttaatctattttaatatatactttct 185  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25253183 tttttgtattcagcacaaatttgtgttagagatcttttaatctattttaatatatactttct 25253122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 25253077 - 25252934
Alignment:
Q  230 gttggcattttaattatttgatttgagctgacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaa 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  25253077 gttggcattttaattatttgatttgagctgacgagttgaacctaatgagtcgagtcgagctgttcgtgaactttaaacgagccgaactcgagcttaacaa 25252978  T
Q  330 aaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||||    
T  25252977 aaagttcgtattgaactcgagtcgagttttgagccgaaccaatt 25252934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 373
Target Start/End: Original strand, 39471054 - 39471159
Alignment:
Q  268 aacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaa 367  Q
    ||||||| ||| ||| |||| ||||||||||| || |||||||| |||||||| || || ||| ||||| | ||||||||||| ||||||||||||||||    
T  39471054 aacctaacgagccgaatcgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaa 39471153  T
Q  368 ccaatt 373  Q
    ||||||    
T  39471154 ccaatt 39471159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 32688726 - 32688619
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||||| || ||||||||  |||||||||||||    
T  32688726 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcatgtcaaactcgagctgagtttcgagccg 32688627  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  32688626 aaccaatt 32688619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 370
Target Start/End: Complemental strand, 33896072 - 33895979
Alignment:
Q  277 agtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaacca 370  Q
    |||||| |||||||||||||||| || |||||||||||| |||| || || |||| |||| | ||||||||||||||||||| |||| ||||||    
T  33896072 agtcgaatcgagctgttcgtgaactttaaacgagccgaattcgagctaaaaaaaaggttcgtgtcgaactcgagtcgagtttggagctgaacca 33895979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 249 - 358
Target Start/End: Original strand, 19561363 - 19561472
Alignment:
Q  249 gatttgagctgacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcg 348  Q
    |||||||  ||||||  ||||||||| |||||||| |||||||||||  || || |||||| |||||||| | ||||| ||||||||  |||||||||||    
T  19561363 gatttgaaatgacgaactgaacctaaagagtcgagccgagctgttcgataactttaaacgaaccgaactcaagcttaaaaaaaagtttgtatcgaactcg 19561462  T
Q  349 agtcgagttt 358  Q
    | ||||||||    
T  19561463 aatcgagttt 19561472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 30740872 - 30740795
Alignment:
Q  293 tcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaacca 370  Q
    ||||||| || ||||||||||||||||| || || |||| |||| | ||||||||||||||||||||||||| |||||    
T  30740872 tcgtgaactttaaacgagccgaactcgagctaaaaaaaaggttcgtgtcgaactcgagtcgagtttcgagccaaacca 30740795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 372
Target Start/End: Original strand, 20407785 - 20407829
Alignment:
Q  328 aaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaat 372  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  20407785 aaaaagttcgtatcgaactcgagtcgagtttcgagccgaaccaat 20407829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 373
Target Start/End: Original strand, 7521710 - 7521820
Alignment:
Q  263 agttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaag-ttcatatcgaactcgagtcgagtttcga 361  Q
    |||||||||||| ||||| |  |||||||||||||||||| |||| || | |||| ||  |||| |||||| ||| | ||||||||||||||||||||||    
T  7521710 agttgaacctaacgagtcaaaccgagctgttcgtgaattttaaacaagtcaaacttgag-ttaaaaaaaagattcgtttcgaactcgagtcgagtttcga 7521808  T
Q  362 gccgaaccaatt 373  Q
    ||||||| ||||    
T  7521809 gccgaacgaatt 7521820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 366
Target Start/End: Complemental strand, 12710234 - 12710126
Alignment:
Q  259 gacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaa--gttcatatcgaactcgagtcgagt 356  Q
    |||||||||||||||| ||| |||  |||| |||||| ||| || |||||||||||||||| | |||| |||||  |||| | || ||||||||||||||    
T  12710234 gacgagttgaacctaacgagccgaaccgagttgttcgcgaactttaaacgagccgaactcg-agttaagaaaaaaggttcgtttcaaactcgagtcgagt 12710136  T
Q  357 ttcgagccga 366  Q
    ||||||||||    
T  12710135 ttcgagccga 12710126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 15823191 - 15823253
Alignment:
Q  304 aaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccga 366  Q
    ||||||| ||||||||| || || ||| ||||||| |||||||||||||||||||||||||||    
T  15823191 aaacgagtcgaactcgagctgaaaaaagagttcatgtcgaactcgagtcgagtttcgagccga 15823253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 373
Target Start/End: Original strand, 38644192 - 38644304
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    |||| |||||||||| |||||||  ||| || |||||||| || |||| || |||| |||| || || ||||||||| | |||||||||||||||||||     
T  38644192 acgaattgaacctaacgagtcgaaccgaactattcgtgaactttaaacaagtcgaattcgagctgaa-aaaaagttcgtgtcgaactcgagtcgagtttt 38644290  T
Q  360 gagccgaaccaatt 373  Q
    ||||||||| ||||    
T  38644291 gagccgaacaaatt 38644304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 54432864 - 54432948
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgag 350  Q
    ||||||||| |||||||  |||| ||||||||||||| ||||||||||||||||| || || |||| |||| | | |||||||||    
T  54432864 tgaacctaacgagtcgaaccgagttgttcgtgaattttaaacgagccgaactcgagctaaaaaaaaggttcgttttgaactcgag 54432948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 20661842 - 20661735
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  |||| |||||||||| || |||||||| |||||||||| | | |||| |||  |||| ||||| ||||||||||||||| |    
T  20661842 tgaacctaacgagccgaaccgagttgttcgtgaactttaaacgagctgaactcgaaccttaaaaaaggtttgtatcaaactcaagtcgagtttcgagctg 20661743  T
Q  366 aaccaatt 373  Q
    || |||||    
T  20661742 aatcaatt 20661735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 5418183 - 5418103
Alignment:
Q  293 tcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||| || |||||||| ||| |||| |  || |||| |||| | | ||||||||||||||||||||||||||||||||    
T  5418183 tcgtgaactttaaacgagctgaaatcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccgaaccaatt 5418103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 373
Target Start/End: Complemental strand, 7834232 - 7834117
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaa--gttcatatcgaactcgagtcgagtt 357  Q
    |||||||||||||||||||| ||  ||| ||||||||||| || ||| |||| |||||||| || || |||||  |||| | || ||||||| | |||||    
T  7834232 acgagttgaacctaatgagttgaaccgaactgttcgtgaactttaaatgagctgaactcgagctaaaaaaaaaaggttcgtttcaaactcgaattgagtt 7834133  T
Q  358 tcgagccgaaccaatt 373  Q
    | |||| |||||||||    
T  7834132 ttgagctgaaccaatt 7834117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 39943728 - 39943812
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||| |||||| || |||| |||||||||| | || || ||||||||| | || |||||||| |||||||||||| |||||||||    
T  39943728 ctgtacgtgaactttaaacaagccgaactcaagctgaaaaaaaagttcgtgtcaaactcgagccgagtttcgagctgaaccaatt 39943812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 7029277 - 7029195
Alignment:
Q  290 tgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||| || || ||||||||||||||  ||||||| ||||| ||| | ||||||||||| |||||||||||| |||| ||||    
T  7029277 tgttcgtaaactttaaacgagccgaacttaaacttaaaaaaaa-ttcgtgtcgaactcgagccgagtttcgagctgaacaaatt 7029195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 40943061 - 40942955
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| |||||||  ||||  ||||||||| || ||| ||||||||||||| ||  | |||| |||| | | ||||||||| ||||||||||| ||    
T  40943061 tgaacctaacgagtcgaaccgagtggttcgtgaactttaaatgagccgaactcgagctaga-aaaaggttcgttttgaactcgagccgagtttcgagtcg 40942963  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  40942962 aaccaatt 40942955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 23206910 - 23206964
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcga 320  Q
    ||||||||| |||||||  ||| ||||||||||| || |||||||||||||||||    
T  23206910 tgaacctaacgagtcgaaccgaactgttcgtgaactttaaacgagccgaactcga 23206964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 366
Target Start/End: Complemental strand, 52198949 - 52198843
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    |||| |||||||||| ||| |||  | | ||||| ||||| || ||||||| | || |||| || || ||| ||||| | ||||||||||||||||||||    
T  52198949 acgaattgaacctaacgagccgaaccaaactgtttgtgaactttaaacgagtcaaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttc 52198850  T
Q  360 gagccga 366  Q
    |||||||    
T  52198849 gagccga 52198843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 371
Target Start/End: Original strand, 27040593 - 27040622
Alignment:
Q  342 gaactcgagtcgagtttcgagccgaaccaa 371  Q
    ||||||||||||||||||||||||||||||    
T  27040593 gaactcgagtcgagtttcgagccgaaccaa 27040622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 373
Target Start/End: Complemental strand, 39133871 - 39133838
Alignment:
Q  340 tcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| ||||||||||||||||||||||    
T  39133871 tcgaactcgagccgagtttcgagccgaaccaatt 39133838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 12428446 - 12428285
Alignment:
Q  24 aacttcattgtacctaaattatattttagtaccatgctattttaacttaacagcgctgggtcaaataattatattttagtacccaaattataatttgtta 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||| ||||||||||||||    
T  12428446 aacttcattgtacctaaattatattttagtaccatgctattttaacttaagagcgttgggttaaataaatatattttagtacccatattataatttgtta 12428347  T
Q  124 tttttgtattcagcacaaatttgtgtttgagatcttttaatctattttaatatatactttct 185  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  12428346 tttttgtaatcagcacaaatttgtgcttgagatctcttaatctattttaatatatactttct 12428285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 12428246 - 12428103
Alignment:
Q  230 gttggcattttaattatttgatttgagctgacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaa 329  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || || ||||||| ||||||||| ||||||||    
T  12428246 gttggcattttaattatttgatttgagctgacaagttgaacctaatgagtcgagtcgaactgttcgtaaactttaaacgagtcgaactcgagcttaacaa 12428147  T
Q  330 aaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  12428146 aaagttcgtatcgaactcgagtcgagtttcgagccgaatcaatt 12428103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 10346379 - 10346272
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||| ||||||||||||||    
T  10346379 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccg 10346280  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  10346279 aaccaatt 10346272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 268 - 373
Target Start/End: Complemental strand, 7957219 - 7957114
Alignment:
Q  268 aacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaa 367  Q
    ||||||| ||| |||  ||| ||||||||||| || |||||||| |||||||| || || ||| ||||| | | ||||||||| ||||||||||||||||    
T  7957219 aacctaacgagccgaaccgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtgttgaactcgagccgagtttcgagccgaa 7957120  T
Q  368 ccaatt 373  Q
    ||||||    
T  7957119 ccaatt 7957114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 370
Target Start/End: Original strand, 3082288 - 3082408
Alignment:
Q  250 atttgagctgacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcga 349  Q
    ||||||||  ||||||||||||||| |||||||   ||| || ||||||| || ||||||| |||||||||  | || |||| |||| | |||||||| |    
T  3082288 atttgagcaaacgagttgaacctaacgagtcgaactgagttgctcgtgaacttaaaacgagtcgaactcgagttgaaaaaaaggttcgtttcgaactcta 3082387  T
Q  350 gtcgagtttcgagccgaacca 370  Q
    ||||||||||||||| |||||    
T  3082388 gtcgagtttcgagcccaacca 3082408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 22295496 - 22295416
Alignment:
Q  293 tcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||||| ||| ||||||||||||| |   | ||||||||  | ||||||||||||||||||||||||||||||||||    
T  22295496 tcgtgaattttaaatgagccgaactcgagccggaaaaaaagtttgtttcgaactcgagtcgagtttcgagccgaaccaatt 22295416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 13311515 - 13311408
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||||||| |||||  ||||||||| || ||||||||||||||||| ||  | |||| |||| | ||||||||||  ||||||| ||| ||    
T  13311515 tgaacctaacgagtcgaatcgagtggttcgtgaactttaaacgagccgaactcgagctagaaaaaaggttcgtttcgaactcgaaccgagttttgagtcg 13311416  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  13311415 aaccaatt 13311408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 33109999 - 33109892
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| | | ||||| || || |||| || ||||||||||||||||| |  || |||| |||| | | ||||||||||||||||||||||||    
T  33109999 tgaacctaacgagccaaatcgagttgctcatgaactttaaacgagccgaactcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccg 33109900  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  33109899 aaccaatt 33109892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 18961989 - 18961905
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || ||||||| ||||||||  || || ||| ||||  | ||||||||||| ||||||||||||||||||||||    
T  18961989 ctgttcgtgaactttaaacgagtcgaactcgggctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagccgaaccaatt 18961905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 363
Target Start/End: Original strand, 25181137 - 25181235
Alignment:
Q  265 ttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagc 363  Q
    ||||| |||| ||| ||| |||| ||||| |||||||| ||||||| ||||||||| ||||| ||| ||||| | |||||||| ||  |||||||||||    
T  25181137 ttgaaactaacgagccgaatcgaactgtttgtgaattttaaacgagtcgaactcgagcttaaaaaagagttcgtgtcgaactcaagctgagtttcgagc 25181235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 370
Target Start/End: Complemental strand, 7436882 - 7436763
Alignment:
Q  250 atttgagctgacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcga 349  Q
    ||||||||  ||||||||||||||| |||  ||  | || || ||||||| || |||||||||||||||||  | || |||| |||| | || |||||||    
T  7436882 atttgagcaaacgagttgaacctaacgagctgaaccaagttgctcgtgaactttaaacgagccgaactcgagttgaa-aaaaggttcgtttcaaactcga 7436784  T
Q  350 gtcgagtttcgagccgaacca 370  Q
    || ||||||||||||||||||    
T  7436783 gtggagtttcgagccgaacca 7436763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 472999 - 472900
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    ||||||||||| ||| |||  || || | ||||||||||| || ||||||| ||||||||| || || ||| ||||| | ||||||| ||||||||||||    
T  472999 acgagttgaacttaacgagctgaatcaaactgttcgtgaactttaaacgagtcgaactcgagctgaaaaaagagttcgtgtcgaacttgagtcgagtttc 472900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 370
Target Start/End: Complemental strand, 10493557 - 10493437
Alignment:
Q  250 atttgagctgacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcga 349  Q
    ||||||||  ||||||||||||||||||||||| ||||| || ||||||| || |||||||||||||| ||  | || |||| |||| | ||||||||||    
T  10493557 atttgagcaaacgagttgaacctaatgagtcgaatcgagttgctcgtgaactttaaacgagccgaacttgagttgaaaaaaaggttcgtttcgaactcga 10493458  T
Q  350 gtcgagtttcgagccgaacca 370  Q
    |||||||||||||||||||||    
T  10493457 gtcgagtttcgagccgaacca 10493437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 39407125 - 39407041
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || ||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||| |||||||||||    
T  39407125 ctgttcgtgaactttaaacgagccgaactcgagcttaaaaaaaagttcacttcgaactcgagtcgagtttcgaaccgaaccaatt 39407041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 39408863 - 39408779
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || ||||||||||||||||| ||||| |||||||||   ||||||||||||||||||||||||||||||||||    
T  39408863 ctgttcgtgaactttaaacgagccgaactcgagcttaaaaaaaagttcgcttcgaactcgagtcgagtttcgagccgaaccaatt 39408779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 26299590 - 26299506
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || |||||||||||||||||  |||| |||| |||||  ||||||||||||||||||||||||||||||||||    
T  26299590 ctgttcgtgaactttaaacgagccgaactcgagtttaaaaaaaggttcacttcgaactcgagtcgagtttcgagccgaaccaatt 26299506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 373
Target Start/End: Original strand, 1840969 - 1841057
Alignment:
Q  285 cgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||| |||||||||| || |||||||||||||||||  | || |||  |||| ||||||||||||||||||||||||||||||||||||    
T  1840969 cgagttgttcgtgaactttaaacgagccgaactcgagttaaaaaaagggttcgtatcgaactcgagtcgagtttcgagccgaaccaatt 1841057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 34720059 - 34720143
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || |||||||| |||||||| ||||| |||||||||   |||||||||||||||||||||| |||||||||||    
T  34720059 ctgttcgtgaactttaaacgagctgaactcgagcttaaaaaaaagttcgcttcgaactcgagtcgagtttcgaaccgaaccaatt 34720143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 27450986 - 27451070
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || |||||||||||||||||  |||| |||| ||||   |||||||||||| |||||||||||||||||||||    
T  27450986 ctgttcgtgaactttaaacgagccgaactcgagtttaaaaaaatgttcgcttcgaactcgagttgagtttcgagccgaaccaatt 27451070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 34857074 - 34857006
Alignment:
Q  305 aacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||||||||||||||||| |||| ||||   ||||||||||||| ||||||||||||||||||||    
T  34857074 aacgagccgaactcgaacttaaaaaaatgttcgcttcgaactcgagtcaagtttcgagccgaaccaatt 34857006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 18879787 - 18879680
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||| ||||||||||||| || || ||| ||||| | ||||||||||| | ||||||||||||    
T  18879787 tgaacctaacgagccgaaccgaactgttcgtgaactttaaatgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgagccg 18879688  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  18879687 aaccaatt 18879680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 41782861 - 41782754
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  |||| || ||||||| || ||||||||||||||||| |  || |||| |||| | | ||||||||||||||||||||||||    
T  41782861 tgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccg 41782762  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  41782761 aaccaatt 41782754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 373
Target Start/End: Complemental strand, 27195593 - 27195483
Alignment:
Q  263 agttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgag 362  Q
    |||||||||||| || || |  ||||||||||||||| || |||||||||||||||||  |  | |||| |||| | || ||||||||| ||||||||||    
T  27195593 agttgaacctaacgaatcaaaccgagctgttcgtgaactttaaacgagccgaactcgagttagagaaaaggttcgtttcaaactcgagtagagtttcgag 27195494  T
Q  363 ccgaaccaatt 373  Q
    |||||||||||    
T  27195493 ccgaaccaatt 27195483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 19715913 - 19715833
Alignment:
Q  292 ttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||| || |||||||||||||||||  |||| |||| ||||   ||||||||||||||||||||||||||||||||||    
T  19715913 ttcgtgaactttaaacgagccgaactcgagtttaa-aaaaggttcgcttcgaactcgagtcgagtttcgagccgaaccaatt 19715833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 26298046 - 26297965
Alignment:
Q  292 ttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||| || |||||||||||||||||  |||| |||| ||||   |||||||||| |||||||||||||||||||||||    
T  26298046 ttcgtgaactttaaacgagccgaactcgagtttaaaaaaaggttcgcttcgaactcgaatcgagtttcgagccgaaccaatt 26297965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 32157385 - 32157465
Alignment:
Q  293 tcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||| | ||||||||||||||||||||    
T  32157385 tcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgagccgaaccaatt 32157465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 373
Target Start/End: Original strand, 19283554 - 19283664
Alignment:
Q  262 gagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcga 361  Q
    |||||||| ||||||||||||  |||| |||||||||| || |||  ||  ||||||||  |||| |||| |||| ||||||||||||||||||||||||    
T  19283554 gagttgaatctaatgagtcgaaccgagttgttcgtgaactttaaatcagtagaactcgag-ttaaaaaaaggttcgtatcgaactcgagtcgagtttcga 19283652  T
Q  362 gccgaaccaatt 373  Q
    ||  ||||||||    
T  19283653 gctaaaccaatt 19283664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 27905647 - 27905540
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || |||||||||||| |||  || || ||| ||||| | ||||||||||| ||||||||| ||||    
T  27905647 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaattcgggctgaaaaaatagttcgtgtcgaactcgagccgagtttcgtgccg 27905548  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  27905547 aaccaatt 27905540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 3805385 - 3805453
Alignment:
Q  305 aacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||| |||||||| || || ||| ||||| | ||||||||||| ||||||||||||||||||||||    
T  3805385 aacgagctgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaatt 3805453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 26217563 - 26217483
Alignment:
Q  293 tcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||| || |||||||||||||| || |  || |||| |||| | | ||||||||||||||||||||||||||||||||    
T  26217563 tcgtgaactttaaacgagccgaactggagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccgaaccaatt 26217483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 34724035 - 34724119
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| |  |||||||| |||||||| ||||| |||| ||||   |||||||||||||||||||||| | |||||||||    
T  34724035 ctgttcgtgaactctaaacgagctgaactcgagcttaaaaaaaggttcgcttcgaactcgagtcgagtttcgaactgaaccaatt 34724119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 4983938 - 4984045
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  |||| || ||||||| || ||||||||||||||||| |  || |||| |||| | | |||||||||||||||||| ||| |    
T  4983938 tgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcaagctg 4984037  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  4984038 aaccaatt 4984045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 373
Target Start/End: Original strand, 5385086 - 5385169
Alignment:
Q  290 tgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||||| || ||||||| ||||||||| || || ||| ||||| | | ||||||||||| ||||||||||||||| ||||    
T  5385086 tgttcgtgaactttaaacgagtcgaactcgagctaaaaaaagagttcgtgttgaactcgagtcaagtttcgagccgaacaaatt 5385169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 373
Target Start/End: Original strand, 40057779 - 40057891
Alignment:
Q  262 gagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaag--ttcatatcgaactcgagtcgagtttc 359  Q
    |||||||||||||||||| ||  ||||  ||||||||| ||||||| ||||||||||||  |||| ||||||  ||  |||||||||||| | |||||||    
T  40057779 gagttgaacctaatgagttgaaccgagtggttcgtgaacttgaaacaagccgaactcgag-ttaaaaaaaaggttttgtatcgaactcgaattgagtttc 40057877  T
Q  360 gagccgaaccaatt 373  Q
     ||| |||||||||    
T  40057878 aagctgaaccaatt 40057891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 373
Target Start/End: Complemental strand, 28430698 - 28430609
Alignment:
Q  285 cgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaag-ttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||| ||||||| || || |||||||||||||||||| | ||  ||||| ||| ||||||||||||||||||||| |||| |||| ||||    
T  28430698 cgagttgttcgttaactttaaacgagccgaactcgaattaaaagaaaaggttcgtatcgaactcgagtcgagttttgagctgaactaatt 28430609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 1224731 - 1224635
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgag 362  Q
    ||||||||| ||| |||  ||| |||||||||||  | ||||||| ||||||||| |  || ||| ||||| | |||||||||||||||||||||||    
T  1224731 tgaacctaacgagccgaaccgaactgttcgtgaaccttaaacgagtcgaactcgagcggaataaagagttcgtgtcgaactcgagtcgagtttcgag 1224635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 369
Target Start/End: Original strand, 11136636 - 11136739
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  |||| || ||||||| || |||||| |||| ||||| |  || |||| |||| | | ||||||||||||||||||||||||    
T  11136636 tgaacctaacgagccgaaccgagttgctcgtgaactttaaacgaaccgagctcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcgagccg 11136735  T
Q  366 aacc 369  Q
    ||||    
T  11136736 aacc 11136739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 43385940 - 43385858
Alignment:
Q  292 ttcgtgaatttgaaacgagccgaactcgaacttaacaaaaa-gttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||| || ||||||||||||||| | || || ||||| |||  | ||||||||||| |||||||||||| |||||||||    
T  43385940 ttcgtgaactttaaacgagccgaactcaagctgaaaaaaaaagtttgtgtcgaactcgagccgagtttcgagctgaaccaatt 43385858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 29322218 - 29322134
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgag 350  Q
    ||||||||| ||| |||  ||| | ||||||||| || ||||||||||||||||| || || ||| ||||| | |||||||||||    
T  29322218 tgaacctaacgagccgaaccgaacagttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 29322134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 38523253 - 38523313
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcga 349  Q
    ||||||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||    
T  38523253 ctgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcga 38523313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 259 - 373
Target Start/End: Complemental strand, 24575474 - 24575360
Alignment:
Q  259 gacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagttt 358  Q
    |||||||||||||||| ||| |||  |||| |||||||||| || |||||||||||||||||  | || ||||||||| | || ||||||||||||||||    
T  24575474 gacgagttgaacctaacgagccgaaccgagttgttcgtgaactttaaacgagccgaactcgagttaaaaaaaaagttcgtttcaaactcgagtcgagttt 24575375  T
Q  359 cgagccgaaccaatt 373  Q
    |||||||||||||||    
T  24575374 cgagccgaaccaatt 24575360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 373
Target Start/End: Original strand, 37441788 - 37441893
Alignment:
Q  268 aacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaa 367  Q
    ||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||| ||||||||||||||||    
T  37441788 aacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaa 37441887  T
Q  368 ccaatt 373  Q
    ||||||    
T  37441888 ccaatt 37441893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 32179477 - 32179393
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||||||||| ||||||||||||||||| || || ||| ||||| | || ||||| || ||||||||||||||||||||||    
T  32179477 ctgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcgtgtcaaactcaagccgagtttcgagccgaaccaatt 32179393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 36418687 - 36418580
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || |||||| |||||||||| || || ||| | ||| | ||||||||||| ||||||||||||||    
T  36418687 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgaaccgaactcgagctgaaaaaataattcgtgtcgaactcgagccgagtttcgagccg 36418588  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  36418587 aaccaatt 36418580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 43090005 - 43090112
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  |||| || ||||||| || ||||||||||||||||| |  || |||| |||| | | ||||||||||||||||||||||||    
T  43090005 tgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaatgttcgttttgaactcgagtcgagtttcgagccg 43090104  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  43090105 aaccaatt 43090112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 14578998 - 14579087
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcga 349  Q
    |||| ||||||||||||||||||  | | |||||||||||||| |||||||||||||| ||||| || ||||||||| | || |||||||    
T  14578998 acgaattgaacctaatgagtcgaaccaaactgttcgtgaattttaaacgagccgaacttgaactcaaaaaaaagttcgtgtcaaactcga 14579087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 15257819 - 15257926
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| |||||||  ||||  ||||||||| || ||||||||||||||||| ||  | |||  |||| | ||||||||||  ||||||||||||||    
T  15257819 tgaacctaacgagtcgaaccgagtggttcgtgaactttaaacgagccgaactcgagctagaaaaatggttcgtttcgaactcgaaccgagtttcgagccg 15257918  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  15257919 aaccaatt 15257926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 373
Target Start/End: Complemental strand, 7994918 - 7994806
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    ||||||||||||||| ||||||| |||| || ||||| || || | |||||| |||||||  || || |||| |||| | ||||||||||||||||||||    
T  7994918 acgagttgaacctaacgagtcgaatcgaactattcgtaaactttatacgagctgaactcgtgctaaa-aaaaggttcgtttcgaactcgagtcgagtttc 7994820  T
Q  360 gagccgaaccaatt 373  Q
    |||| ||| |||||    
T  7994819 gagctgaatcaatt 7994806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 29678104 - 29678181
Alignment:
Q  293 tcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaacca 370  Q
    ||||||| || |||||||||||||||||  | || |||| |||| | ||||||| |||||||||||||||||||||||    
T  29678104 tcgtgaactttaaacgagccgaactcgagatgaaaaaaaggttcgtttcgaacttgagtcgagtttcgagccgaacca 29678181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 31869037 - 31868956
Alignment:
Q  285 cgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccga 366  Q
    |||| |||||||||| || ||||||||||||| |||  |||| |||  |||  |||||||||||||||||||||||||||||    
T  31869037 cgagatgttcgtgaactttaaacgagccgaacccgagtttaaaaaatggtttgtatcgaactcgagtcgagtttcgagccga 31868956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 24470499 - 24470583
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgag 350  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||| |||||||||||||    
T  24470499 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtatcgaactcgag 24470583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 373
Target Start/End: Complemental strand, 44595971 - 44595884
Alignment:
Q  285 cgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||| |||||||||| || ||||||||||||||  || |||| |||  |||| |||||||||| ||||||||||||| |||||||||||    
T  44595971 cgagttgttcgtgaactttaaacgagccgaactt-aagttaaaaaagggttcgtatcgaactcaagtcgagtttcgaaccgaaccaatt 44595884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 3577081 - 3576998
Alignment:
Q  290 tgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||||| || |||||||||||||||||  | || |||| |||  |||||||||| | ||||||||||||| |||||||||    
T  3577081 tgttcgtgaactttaaacgagccgaactcgagttaaataaaatgtttgtatcgaactcaaatcgagtttcgagctgaaccaatt 3576998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 373
Target Start/End: Original strand, 5205075 - 5205190
Alignment:
Q  259 gacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaag-ttcatatcgaactcgagtcgagtt 357  Q
    |||||||||||||||| ||| |||  |||| |||||| ||| || ||| ||| |||||| ||  | || |||||| ||| | || |||||||||||||||    
T  5205075 gacgagttgaacctaacgagccgaaccgagttgttcgcgaactttaaatgagtcgaacttgaggtaaaaaaaaaggttcgtttcaaactcgagtcgagtt 5205174  T
Q  358 tcgagccgaaccaatt 373  Q
    ||||||||||||||||    
T  5205175 tcgagccgaaccaatt 5205190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 7955816 - 7955709
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| |||||||  | ||  ||||||||| || ||||||||||||||||| ||  | ||||  ||| | ||||||||||  ||||||||||||||    
T  7955816 tgaacctaacgagtcgaaccaagtggttcgtgaactttaaacgagccgaactcgagctagaaaaaagattcgtttcgaactcgaaccgagtttcgagccg 7955717  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  7955716 aaccaatt 7955709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 38061586 - 38061647
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgag 350  Q
    |||||||||||||| ||||||||||||||||| ||||| |||  |||| | |||||||||||    
T  38061586 ctgttcgtgaattttaaacgagccgaactcgagcttaaaaaatggttcgtttcgaactcgag 38061647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 13645716 - 13645796
Alignment:
Q  293 tcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||||| ||| ||| ||||||||| |   | ||||||||  | || |||||||||||||||||||||||||||||||    
T  13645716 tcgtgaattttaaatgagtcgaactcgagccggaaaaaaagtttgtttcaaactcgagtcgagtttcgagccgaaccaatt 13645796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 42936641 - 42936598
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaa 332  Q
    ||||||||||| || ||||||||||||||||||||||| |||||    
T  42936641 ctgttcgtgaactttaaacgagccgaactcgaacttaaaaaaaa 42936598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 373
Target Start/End: Original strand, 46265575 - 46265686
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    |||| |||||||||||||| |||  | | ||||||||||| || |||||||||||||| |||||  | |||||| || | || ||||||| ||||| |||    
T  46265575 acgaattgaacctaatgagccgaaccaaactgttcgtgaactttaaacgagccgaacttgaact--aaaaaaagctcgtgtcaaactcgaatcgaggttc 46265672  T
Q  360 gagccgaaccaatt 373  Q
    || |||||| ||||    
T  46265673 gaaccgaactaatt 46265686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 38061638 - 38061699
Alignment:
Q  312 cgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||| ||||| |||| ||||   ||||||||||||||| ||| ||||||||||||||    
T  38061638 cgaactcgagcttaaaaaaaggttcgcttcgaactcgagtcgaattttgagccgaaccaatt 38061699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 15662463 - 15662407
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaac 316  Q
    |||| ||||||||||||||||||  | | ||||||||||| || |||||||||||||    
T  15662463 acgaattgaacctaatgagtcgaaccaaactgttcgtgaactttaaacgagccgaac 15662407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 28005827 - 28005795
Alignment:
Q  341 cgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||| ||||||||||||||||||||||||||    
T  28005827 cgaacttgagtcgagtttcgagccgaaccaatt 28005795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 373
Target Start/End: Complemental strand, 22074726 - 22074621
Alignment:
Q  268 aacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaa 367  Q
    ||||||| |||||||  |||| ||||||||||||| |||||||||||| | || |   | ||||||||||||||||||||||||||||||||||||||||    
T  22074726 aacctaacgagtcgaaccgagttgttcgtgaattttaaacgagccgaatttgagccataaaaaaagttcatatcgaactcgagtcgagtttcgagccgaa 22074627  T
Q  368 ccaatt 373  Q
    ||||||    
T  22074626 ccaatt 22074621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 37333865 - 37333757
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaa-agttcatatcgaactcgagtcgagtttcgagcc 364  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || |||| ||||||||||||||||||| |||||||||||||    
T  37333865 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaaatagttcatatcgaactcgagccgagtttcgagcc 37333766  T
Q  365 gaaccaatt 373  Q
    |||||||||    
T  37333765 gaaccaatt 37333757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 42071687 - 42071580
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| |||||||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||| ||||||||||||||    
T  42071687 tgaacctaacgagtcgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccg 42071588  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  42071587 aaccaatt 42071580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 373
Target Start/End: Original strand, 17025963 - 17026078
Alignment:
Q  259 gacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaag-ttcatatcgaactcgagtcgagtt 357  Q
    |||||||||||||||| |||||||  |||| |||||| ||| || |||||||||||||||||  | || |||||| ||| | || |||||||||||||||    
T  17025963 gacgagttgaacctaacgagtcgaaccgagttgttcgcgaactttaaacgagccgaactcgagttaaaaaaaaagattcgtttcaaactcgagtcgagtt 17026062  T
Q  358 tcgagccgaaccaatt 373  Q
    ||||||||||||||||    
T  17026063 tcgagccgaaccaatt 17026078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 36926576 - 36926469
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| ||| |||| |||||||||||||| ||| |||||||||||||  | || ||| ||||| | ||||||||||| ||||||||||||||    
T  36926576 tgaacctaacgagccgaatcgaactgttcgtgaattttaaatgagccgaactcgagatgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccg 36926477  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  36926476 aaccaatt 36926469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 373
Target Start/End: Complemental strand, 10618194 - 10618081
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaag-ttcatatcgaactcgagtcgagttt 358  Q
    ||||||||||||||| ||| |||   ||| |||||||||| || ||||||||||||||| || |||| |||||| ||||||||| |||||||||||||||    
T  10618194 acgagttgaacctaacgaggcgaactgagttgttcgtgaactttaaacgagccgaactc-aagttaaaaaaaaggttcatatcgcactcgagtcgagttt 10618096  T
Q  359 cgagccgaaccaatt 373  Q
    ||| |||||||||||    
T  10618095 cgaaccgaaccaatt 10618081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 26215884 - 26215777
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||||| |  ||| ||||||||||| || |||||||||||||||||  | || ||| ||||| | ||||||||||| ||||||||||||||    
T  26215884 tgaacctaacgagtcaaaccgaactgttcgtgaactttaaacgagccgaactcgagttgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccg 26215785  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  26215784 aaccaatt 26215777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 373
Target Start/End: Original strand, 18250616 - 18250726
Alignment:
Q  263 agttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgag 362  Q
    |||||||||||| |||||||  ||| ||||||||||| || |||||||||||||||||  |  | |||| |||| | || |||||||||| |||||||||    
T  18250616 agttgaacctaacgagtcgaaccgaactgttcgtgaactttaaacgagccgaactcgagttagagaaaaggttcgtttcaaactcgagtcaagtttcgag 18250715  T
Q  363 ccgaaccaatt 373  Q
    |||||||||||    
T  18250716 ccgaaccaatt 18250726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 3931321 - 3931429
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaa-agttcatatcgaactcgagtcgagtttcgagcc 364  Q
    ||||||||| ||| |||  ||| ||||||||||| || |||||||| |||||||| || || |||| ||||| | ||||||||||| |||||||||||||    
T  3931321 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagctgaactcgagctgaaaaaaatagttcgtgtcgaactcgagccgagtttcgagcc 3931420  T
Q  365 gaaccaatt 373  Q
    |||||||||    
T  3931421 gaaccaatt 3931429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 666189 - 666296
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || |||||||||||||| || || || ||| ||||  | ||||||||||| ||||||||||||||    
T  666189 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaacttgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgagccg 666288  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  666289 aaccaatt 666296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 373
Target Start/End: Original strand, 5776562 - 5776645
Alignment:
Q  290 tgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||||| ||||||||||||||||| || || ||| ||||| | ||||||||||| |||||||||||| |||| ||||    
T  5776562 tgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcttgtcgaactcgagccgagtttcgagctgaactaatt 5776645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 222910 - 223016
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    |||| |||||||||| ||| |||  ||| |||||||||||||| ||||||| | || |||| || || ||| ||||| | ||||||||||||||||||||    
T  222910 acgaattgaacctaacgagccgaaccgaactgttcgtgaattttaaacgagtcaaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttc 223009  T
Q  360 gagccga 366  Q
    |||||||    
T  223010 gagccga 223016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 43052426 - 43052342
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || ||| ||||||||||||| || || ||| ||||| | ||||||||||| | ||||||||||||||||||||    
T  43052426 ctgttcgtgaactttaaatgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccaagtttcgagccgaaccaatt 43052342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 359
Target Start/End: Complemental strand, 8110924 - 8110833
Alignment:
Q  268 aacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    ||||||||||||||| |||| ||||| ||||| || |||||||| |||||||| || || ||| ||||| | ||||||||||| ||||||||    
T  8110924 aacctaatgagtcgaatcgaactgtttgtgaactttaaacgagctgaactcgagctgaaaaaagagttcgtgtcgaactcgagccgagtttc 8110833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 45054960 - 45054853
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  |||| || ||||||| || ||||||||||||||||| |  || |||| |||| | | |||||||||||||||||| |||||    
T  45054960 tgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaaggttcgttttgaactcgagtcgagtttcaagccg 45054861  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  45054860 aaccaatt 45054853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 7539647 - 7539731
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||| || || ||||||||||||||||| || || ||||| |||   ||||||||||| |||||||||||| |||||||||    
T  7539647 ctgttcgtaaactttaaacgagccgaactcgagctgaaaaaaaaattcgagtcgaactcgagccgagtttcgagctgaaccaatt 7539731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 366
Target Start/End: Original strand, 49035038 - 49035138
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| ||| |||| |||||||||||  | ||| ||| ||||||||| || || ||| ||||| | || |||||||||||||||||||||||    
T  49035038 tgaacctaacgagccgaatcgaactgttcgtgaaccttaaaagagtcgaactcgagctaaaaaaagagttcgtgtcaaactcgagtcgagtttcgagccg 49035137  T
Q  366 a 366  Q
    |    
T  49035138 a 49035138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 373
Target Start/End: Original strand, 33899574 - 33899685
Alignment:
Q  262 gagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcga 361  Q
    ||||||||||||| |||||||  ||||  ||||||||| || ||||||||||||||||| ||  | |||| |||| | | |||| |||  ||||||||||    
T  33899574 gagttgaacctaacgagtcgaaccgagtggttcgtgaactttaaacgagccgaactcgagctagaaaaaaggttcgttttgaacccgaaccgagtttcga 33899673  T
Q  362 gccgaaccaatt 373  Q
    |||||| |||||    
T  33899674 gccgaatcaatt 33899685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 388582 - 388498
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgag 350  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||| | |||||||||||    
T  388582 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 388498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 7443973 - 7443889
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||||||  | |||||||| |||||||| || || ||| ||||  | ||||||||||| |||||||||| |||||||||||    
T  7443973 ctgttcgtgaacattaaacgagctgaactcgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgaaccgaaccaatt 7443889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 363
Target Start/End: Original strand, 8390105 - 8390208
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    ||||||||||||||| ||| |||  |||| ||||||||||  | ||||||||| ||||||| || |  |||| |||  ||||||| |||||| |||||||    
T  8390105 acgagttgaacctaacgagccgaaccgagttgttcgtgaacattaaacgagccaaactcgagctaagaaaaaggtttgtatcgaattcgagttgagtttc 8390204  T
Q  360 gagc 363  Q
    ||||    
T  8390205 gagc 8390208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 36471946 - 36471864
Alignment:
Q  290 tgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||| ||||| ||| |||||||||||||| |||| |||| |||  | ||||||| ||||||||||| |||||||| |||||    
T  36471946 tgttcgtaaattttaaatgagccgaactcgaatttaa-aaaaggtttgtttcgaacttgagtcgagttttgagccgaatcaatt 36471864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 41449289 - 41449207
Alignment:
Q  291 gttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||| || |||||||| |||||||| ||  | |||| |||  ||||||| ||||||||| ||||||||||| ||||||    
T  41449289 gttcgtgaactttaaacgagctgaactcgagctagaaaaaaggtttgtatcgaattcgagtcgaatttcgagccgagccaatt 41449207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 5795502 - 5795563
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgag 350  Q
    ||||||||||| || ||||||||||||||||| || || ||| ||||| | |||||||||||    
T  5795502 ctgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 5795563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 15433784 - 15433700
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgag 350  Q
    ||||||||| ||| |||  ||| |||||| |||| || ||||||||||||||||| || || ||| ||||| | |||||||||||    
T  15433784 tgaacctaacgagccgaaccgaactgttcatgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 15433700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 49820522 - 49820438
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||||||||||||||||||||||||||    
T  49820522 ctgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagtcgagtttcgagccgaaccaatt 49820438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 9469594 - 9469487
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| ||| |||| ||||||||||| || |||||| |||||||||| || || ||| ||||| | ||||||||||| ||||||||||||||    
T  9469594 tgaacctaacgagccgaatcgaactgttcgtgaactttaaacgatccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccg 9469495  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  9469494 aaccaatt 9469487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 48977147 - 48977064
Alignment:
Q  290 tgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||||| ||||||||||||||||| || || ||| ||||| | ||||||||||| ||||||||||||||||||||||    
T  48977147 tgttcgtgaattttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaatt 48977064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 372
Target Start/End: Complemental strand, 19850299 - 19850193
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||| ||||||||||||||    
T  19850299 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccg 19850200  T
Q  366 aaccaat 372  Q
    |||||||    
T  19850199 aaccaat 19850193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 266 - 366
Target Start/End: Original strand, 28266717 - 28266817
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| |||||||  ||| ||||||||||| || ||||||| ||||||||| || || ||| ||||| | ||||||||||||||||||||||||||    
T  28266717 tgaacctaacgagtcgaaccgaactgttcgtgaactttaaacgagtcgaactcgagctaaaaaaagagttcgtgtcgaactcgagtcgagtttcgagccg 28266816  T
Q  366 a 366  Q
    |    
T  28266817 a 28266817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 50605622 - 50605515
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || |||| |||||||||||| || || ||| ||||| | ||||||||||| ||||||||||||||    
T  50605622 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacaagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccg 50605523  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  50605522 aaccaatt 50605515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 53369229 - 53369122
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| | ||||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||| ||||||||||||||    
T  53369229 tgaacctaacgagccgaaccgaacagttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccg 53369130  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  53369129 aaccaatt 53369122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 51409087 - 51409194
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||| ||| |||| |||||| || ||||||| ||||||||| || || ||| ||||| | |||||||||| |||||||||||||||    
T  51409087 tgaacctaacgagccgagccgaactgtacgtgaactttaaacgagtcgaactcgagctaaaaaaatagttcgtgtcgaactcgaatcgagtttcgagccg 51409186  T
Q  366 aaccaatt 373  Q
    ||| ||||    
T  51409187 aacaaatt 51409194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 265 - 366
Target Start/End: Complemental strand, 43386702 - 43386601
Alignment:
Q  265 ttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagcc 364  Q
    |||||||||| |||||||  ||| ||||||||||| || ||||||| |||| |||| || || ||| ||||| | |||||||||||||||||||| ||||    
T  43386702 ttgaacctaacgagtcgaaccgaactgttcgtgaactttaaacgagtcgaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttcaagcc 43386603  T
Q  365 ga 366  Q
    ||    
T  43386602 ga 43386601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 373
Target Start/End: Complemental strand, 44377777 - 44377665
Alignment:
Q  261 cgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaactta-acaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    |||||||||||||| ||| |||  | || |||||||||| || ||||||||||||||| || ||| | |||| |||| | || |||||||||||||||||    
T  44377777 cgagttgaacctaacgagccgaaccaagttgttcgtgaactttaaacgagccgaactc-aagttagagaaaaggttcgtttcaaactcgagtcgagtttc 44377679  T
Q  360 gagccgaaccaatt 373  Q
    ||||||||||||||    
T  44377678 gagccgaaccaatt 44377665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 366
Target Start/End: Complemental strand, 52813172 - 52813066
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    |||| ||||||| || |||||||  ||| ||||||||||| || ||||||| |||| |||| || || ||| ||||| | ||||||||||||||||||||    
T  52813172 acgaattgaaccgaacgagtcgaaccgaactgttcgtgaactttaaacgaggcgaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttc 52813073  T
Q  360 gagccga 366  Q
     ||||||    
T  52813072 aagccga 52813066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 21436451 - 21436367
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || ||||||||||||||||| || || ||| ||| | | ||||| ||||| |||||||||||||||| |||||    
T  21436451 ctgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagtccgtgtcgaattcgagccgagtttcgagccgaatcaatt 21436367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 36543461 - 36543365
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgag 362  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||  | ||||||||||| |||||||||||    
T  36543461 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagtttgtgtcgaactcgagccgagtttcgag 36543365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 52705760 - 52705653
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  |||| || |||| || || ||||||||||||||||| |  || |||| |||||| |  ||||||| |||||||||||||||    
T  52705760 tgaacctaacgagccgaaccgagttgctcgtaaactttaaacgagccgaactcgagcccaaaaaaaggttcattttaaactcgaatcgagtttcgagccg 52705661  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  52705660 aaccaatt 52705653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 1803305 - 1803227
Alignment:
Q  295 gtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||| || |||||| |||||||||| ||||| |||| ||||   ||||||||||||| |||||||| |||||||||||    
T  1803305 gtgaactttaaacgaaccgaactcgagcttaaaaaaaggttcgcttcgaactcgagtcaagtttcgaaccgaaccaatt 1803227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 368
Target Start/End: Original strand, 12673633 - 12673743
Alignment:
Q  259 gacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaact-taacaaaaagttcatatcgaactcgagtcgagtt 357  Q
    |||||||||||||||| |||||||  |||| |||||| ||| || |||||||||||| | ||  |  || |||| |||| | || |||||||||||||||    
T  12673633 gacgagttgaacctaacgagtcgaaccgagttgttcgcgaactttaaacgagccgaaattgagttaaaataaaaggttcgtttcaaactcgagtcgagtt 12673732  T
Q  358 tcgagccgaac 368  Q
    |||||||||||    
T  12673733 tcgagccgaac 12673743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 373
Target Start/End: Original strand, 46945141 - 46945255
Alignment:
Q  259 gacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagttt 358  Q
    |||||||| ||||||| ||| |||  |||| |||||   ||||| |||||||||||| ||||  | || |||| |||  | || ||||||||||||||||    
T  46945141 gacgagttaaacctaacgagccgaaccgagttgttcacaaattttaaacgagccgaattcgagttaaaaaaaaggtttgtttcaaactcgagtcgagttt 46945240  T
Q  359 cgagccgaaccaatt 373  Q
    |||||||||||||||    
T  46945241 cgagccgaaccaatt 46945255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 51994212 - 51994143
Alignment:
Q  304 aaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||||||  | || ||||| |||||||||   |||||||||||||||||||||||| |||||||||    
T  51994212 aaacgagccgagtttgagcttaaaaaaaagttcggttcgaactcgagtcgagtttcgagctgaaccaatt 51994143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 5765250 - 5765286
Alignment:
Q  332 agttcatatcgaactcgagtcgagtttcgagccgaac 368  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5765250 agttcatatcgaattcgagtcgagtttcgagccgaac 5765286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 5767494 - 5767530
Alignment:
Q  332 agttcatatcgaactcgagtcgagtttcgagccgaac 368  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5767494 agttcatatcgaattcgagtcgagtttcgagccgaac 5767530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 24009426 - 24009510
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || |||||||| |||||||| || || |||| |||| | | |||||||||||| ||||||||  |||||||||    
T  24009426 ctgttcgtgaactttaaacgagcagaactcgagctaaaaaaaaggttcgttttgaactcgagtcgggtttcgagttgaaccaatt 24009510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 44792766 - 44792850
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgag 350  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||| | |||||||||||    
T  44792766 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 44792850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 50240890 - 50240974
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||| ||||| || |||||||||| ||| || || |||| |||  | |||||||||||| ||||||||||| |||||||||    
T  50240890 ctgttcgttaattttaagcgagccgaacacgagctaaaaaaaaggtttgtttcgaactcgagtagagtttcgagctgaaccaatt 50240974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 366
Target Start/End: Complemental strand, 22183936 - 22183830
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    |||| |||||||||| |||  ||  ||| ||||||||||| || ||||||| | || |||| || || ||| ||||| | |||||||||||||||||||     
T  22183936 acgaattgaacctaacgagcggaaccgaactgttcgtgaactttaaacgagtcaaattcgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttt 22183837  T
Q  360 gagccga 366  Q
    |||||||    
T  22183836 gagccga 22183830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 373
Target Start/End: Original strand, 54625745 - 54625855
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    ||||||||||| ||||||||||| ||||  |||||| ||  || |||||||| ||||||| | |||  ||||| |||||||||||| ||||| ||||||     
T  54625745 acgagttgaacttaatgagtcgaatcgaattgttcgcgagctttaaacgagctgaactcg-agtta--aaaaaattcatatcgaacccgagttgagtttt 54625841  T
Q  360 gagccgaaccaatt 373  Q
    |||  |||||||||    
T  54625842 gagttgaaccaatt 54625855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 5769795 - 5769831
Alignment:
Q  332 agttcatatcgaactcgagtcgagtttcgagccgaac 368  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  5769795 agttcgtatcgaattcgagtcgagtttcgagccgaac 5769831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 41958714 - 41958607
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||| ||||||||||||||    
T  41958714 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccg 41958615  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  41958614 aaccaatt 41958607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 36538244 - 36538137
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||| ||||||| || || ||| ||||| | ||||||||||| ||||||||||||||    
T  36538244 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccaaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccg 36538145  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  36538144 aaccaatt 36538137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 12139508 - 12139426
Alignment:
Q  291 gttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||| ||||||||||||||||||||||    
T  12139508 gttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgagccgagtttcgagccgaaccaatt 12139426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 367
Target Start/End: Complemental strand, 40458503 - 40458398
Alignment:
Q  262 gagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcga 361  Q
    ||||||||||||| |||||||  |||  || |||||||||| |||||||||||||||||  | || |||| |||| | ||||||||||||||||||| ||    
T  40458503 gagttgaacctaacgagtcgaaccgaattgctcgtgaattttaaacgagccgaactcgagttgaaaaaaatgttcgtttcgaactcgagtcgagttttga 40458404  T
Q  362 gccgaa 367  Q
    ||||||    
T  40458403 gccgaa 40458398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 20986208 - 20986124
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || ||||||||||||||||| || || ||| ||||| | |||||||| || ||||||||||||||||||||||    
T  20986208 ctgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcaagccgagtttcgagccgaaccaatt 20986124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 3409816 - 3409922
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    ||||||||||||||| || | ||  ||||  ||||||||| || |||||||||||||||||  | || |||| |||| ||||||||||||||||||||||    
T  3409816 acgagttgaacctaacgatttgaaccgagtagttcgtgaactttaaacgagccgaactcgagttaaaaaaaaggttcgtatcgaactcgagtcgagtttc 3409915  T
Q  360 gagccga 366  Q
     ||||||    
T  3409916 aagccga 3409922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 373
Target Start/End: Complemental strand, 29804399 - 29804323
Alignment:
Q  297 gaatttgaaacgagccgaactcgaacttaacaaaaag-ttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||| |||||||||||||||||  |||| |||||| ||||| ||||||| ||||||||||||||||||||||||||    
T  29804399 gaattttaaacgagccgaactcgag-ttaagaaaaaggttcatttcgaacttgagtcgagtttcgagccgaaccaatt 29804323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 2647573 - 2647680
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  |||| || ||||||| || ||||||||||||||||| |  || |||| |||  | | ||||||||||||||||||||||||    
T  2647573 tgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaaggttggttttgaactcgagtcgagtttcgagccg 2647672  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  2647673 aaccaatt 2647680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 27633309 - 27633202
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||  | | ||||| ||| ||||||||||||||    
T  27633309 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagtttgtgttgaacttgagccgagtttcgagccg 27633210  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  27633209 aaccaatt 27633202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 44741263 - 44741369
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    |||| |||||||||| ||||| |  ||| ||||||||||| || ||||||| |||| | || || || ||| ||||| | ||||||||||||||||||||    
T  44741263 acgaattgaacctaacgagtcaaaccgaactgttcgtgaactttaaacgagtcgaatttgagctgaaaaaagagttcgtgtcgaactcgagtcgagtttc 44741362  T
Q  360 gagccga 366  Q
    |||||||    
T  44741363 gagccga 44741369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 40675265 - 40675225
Alignment:
Q  333 gttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  40675265 gttcgtatcgaactcgagtcgagtttcgagccgaaccaatt 40675225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Original strand, 20204355 - 20204427
Alignment:
Q  260 acgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaa 332  Q
    |||| ||||| ||||||||||||  | | ||||||||||| || |||||||||||||||||||| || |||||    
T  20204355 acgaattgaatctaatgagtcgaaccaaactgttcgtgaactttaaacgagccgaactcgaactgaaaaaaaa 20204427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 373
Target Start/End: Complemental strand, 39801275 - 39801181
Alignment:
Q  279 tcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||| ||| ||||| |||||| | |||||||| |||||||| || || ||| ||||| | ||||||||||| ||| |||||||| |||| ||||    
T  39801275 tcgagccgaactgtttgtgaatcttaaacgagctgaactcgagctgaaaaaagagttcgtgtcgaactcgagccgaatttcgagctgaactaatt 39801181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 350
Target Start/End: Complemental strand, 33831050 - 33830961
Alignment:
Q  261 cgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgag 350  Q
    |||| ||||||||| ||| |||  |||  |||||||||| || ||||||||||||||||| || || ||| ||||| | |||||||||||    
T  33831050 cgagctgaacctaacgagccgaaccgaattgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgag 33830961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 33164537 - 33164621
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgag 350  Q
    ||||||||| ||| |||  ||| ||||||||||| || |||||||||||||| || || || ||| ||||| | |||||||||||    
T  33164537 tgaacctaacgagccgaaccgaactgttcgtgaactttaaacgagccgaactggagctgaaaaaatagttcgtgtcgaactcgag 33164621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 18877 - 18770
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||||||| |||  ||| ||||||||||| || ||||||||||||||||| || || ||| ||||| | ||||||||||  ||||||| ||||||    
T  18877 tgaacctaatgagccgaaccgaactgttcgtgaactttaaacgagccgaactcgagctgaaaaaatagttcgtgtcgaactcgaaccgagttttgagccg 18778  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  18777 aaccaatt 18770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 43967049 - 43966942
Alignment:
Q  266 tgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccg 365  Q
    ||||||||| ||| |||  |||| || ||||||| || ||||||||||||||||| |  || ||||| ||| | | ||||||||||||||||||||||||    
T  43967049 tgaacctaacgagccgaaccgagttgctcgtgaactttaaacgagccgaactcgagcccaaaaaaaaattcgttttgaactcgagtcgagtttcgagccg 43966950  T
Q  366 aaccaatt 373  Q
    ||||||||    
T  43966949 aaccaatt 43966942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 11161222 - 11161138
Alignment:
Q  289 ctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| || |||||||| |||||||| || || ||| ||||| |  |||||||||| |||| |||||||||||||||||    
T  11161222 ctgttcgtgaactttaaacgagctgaactcgagctgaaaaaatagttcgtggcgaactcgagccgaggttcgagccgaaccaatt 11161138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 9413262 - 9413341
Alignment:
Q  291 gttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaacca 370  Q
    ||||||||| || ||| |||||||||| || || || |||| |||| | |||||||| ||||||||||||||||||||||    
T  9413262 gttcgtgaactttaaatgagccgaacttgagctaaaaaaaaggttcgtgtcgaactcaagtcgagtttcgagccgaacca 9413341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 366
Target Start/End: Complemental strand, 22563448 - 22563325
Alignment:
Q  243 ttatttgatttgagctgacgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcg 342  Q
    |||| ||||||||||  || | |||||||||| ||  |||  ||| |||||||||||  | ||||||| ||||||||| || || ||| ||||| | | |    
T  22563448 ttatgtgatttgagcaaacaaattgaacctaacgaaccgaaccgaactgttcgtgaaccttaaacgagtcgaactcgagctgaaaaaagagttcgtgttg 22563349  T
Q  343 aactcgagtcgagtttcgagccga 366  Q
    ||||||||||||||||||||||||    
T  22563348 aactcgagtcgagtttcgagccga 22563325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 12377886 - 12377786
Alignment:
Q  268 aacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaa 367  Q
    |||||||||||| ||  |||| |||| ||||| || |||||||  ||||||||  | || ||| ||||| | |||||||||||||||||||||||| |||    
T  12377886 aacctaatgagtggaaccgagttgtttgtgaactttaaacgagatgaactcgagttaaaaaaatagttcgtttcgaactcgagtcgagtttcgagctgaa 12377787  T
Q  368 c 368  Q
    |    
T  12377786 c 12377786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 373
Target Start/End: Original strand, 17865721 - 17865754
Alignment:
Q  340 tcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    |||||||||||||||||||||||| |||||||||    
T  17865721 tcgaactcgagtcgagtttcgagctgaaccaatt 17865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 373
Target Start/End: Original strand, 22930896 - 22930929
Alignment:
Q  340 tcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||||| ||||||||||||||||||||||    
T  22930896 tcgaactcgagccgagtttcgagccgaaccaatt 22930929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 373
Target Start/End: Original strand, 1381 - 1493
Alignment:
Q  261 cgagttgaacctaatgagtcgagtcgagctgttcgtgaatttgaaacgagccgaactcgaactta-acaaaaagttcatatcgaactcgagtcgagtttc 359  Q
    |||||||||||||| ||| |||  | || |||||||||| || ||||||||||||||| || ||| | |||| |||| | || |||||||||||||||||    
T  1381 cgagttgaacctaacgagccgaaccaagttgttcgtgaactttaaacgagccgaactc-aagttagagaaaaggttcgtttcaaactcgagtcgagtttc 1479  T
Q  360 gagccgaaccaatt 373  Q
    ||||||||||||||    
T  1480 gagccgaaccaatt 1493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 26598 - 26553
Alignment:
Q  328 aaaaagttcatatcgaactcgagtcgagtttcgagccgaaccaatt 373  Q
    ||||||||| | ||||||||||||||| |||||||| |||||||||    
T  26598 aaaaagttcgtttcgaactcgagtcgaatttcgagctgaaccaatt 26553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 4778 - 4745
Alignment:
Q  333 gttcatatcgaactcgagtcgagtttcgagccga 366  Q
    |||| |||||||||||||||||||||||||||||    
T  4778 gttcgtatcgaactcgagtcgagtttcgagccga 4745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 16632 - 16557
Alignment:
Q  292 ttcgtgaatttgaaacgagccgaactcgaacttaacaaaaagttcatatcgaactcgagtcgagtttcgagccgaac 368  Q
    ||||||||||| ||||||||| |||| || | ||| |||| |||  | || ||||||||||||||||||||||||||    
T  16632 ttcgtgaattttaaacgagccaaacttgagcctaa-aaaaggtttgtttcaaactcgagtcgagtttcgagccgaac 16557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University