View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12154_low_6 (Length: 307)

Name: NF12154_low_6
Description: NF12154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12154_low_6
NF12154_low_6
[»] chr6 (16 HSPs)
chr6 (11-307)||(34898656-34898950)
chr6 (161-272)||(1485125-1485235)
chr6 (112-232)||(34620921-34621041)
chr6 (112-232)||(34748358-34748478)
chr6 (111-225)||(882728-882842)
chr6 (124-232)||(34027359-34027467)
chr6 (161-232)||(31305826-31305897)
chr6 (188-232)||(2234550-2234595)
chr6 (194-272)||(30926790-30926868)
chr6 (124-228)||(25388116-25388219)
chr6 (161-232)||(4910943-4911014)
chr6 (109-198)||(434163-434253)
chr6 (102-156)||(19601372-19601426)
chr6 (114-156)||(34026417-34026459)
chr6 (176-232)||(852567-852623)
chr6 (172-232)||(17225887-17225947)
[»] chr7 (11 HSPs)
chr7 (100-272)||(27571858-27572029)
chr7 (114-272)||(38123598-38123755)
chr7 (109-232)||(45557400-45557523)
chr7 (102-230)||(40561678-40561806)
chr7 (102-212)||(33853404-33853514)
chr7 (108-232)||(22310385-22310509)
chr7 (162-228)||(40795969-40796035)
chr7 (124-228)||(12306760-12306866)
chr7 (161-230)||(41788353-41788422)
chr7 (102-131)||(45823307-45823336)
chr7 (124-232)||(40491613-40491721)
[»] chr4 (12 HSPs)
chr4 (100-215)||(33843763-33843878)
chr4 (161-232)||(55927749-55927820)
chr4 (186-232)||(4243422-4243468)
chr4 (192-232)||(33844012-33844052)
chr4 (161-232)||(8604601-8604672)
chr4 (105-156)||(48045675-48045726)
chr4 (186-232)||(2207114-2207160)
chr4 (166-232)||(32818354-32818420)
chr4 (162-207)||(25319108-25319153)
chr4 (186-223)||(32100336-32100373)
chr4 (172-232)||(10185229-10185289)
chr4 (172-231)||(16551993-16552050)
[»] chr2 (11 HSPs)
chr2 (106-232)||(1976788-1976916)
chr2 (161-232)||(44439289-44439360)
chr2 (161-207)||(15220840-15220886)
chr2 (161-232)||(16013683-16013760)
chr2 (160-230)||(37420171-37420243)
chr2 (172-266)||(42982546-42982639)
chr2 (186-232)||(42741012-42741058)
chr2 (98-131)||(11650673-11650706)
chr2 (160-205)||(40401621-40401666)
chr2 (102-146)||(3476349-3476393)
chr2 (161-205)||(4908852-4908896)
[»] scaffold0361 (1 HSPs)
scaffold0361 (161-232)||(14093-14164)
[»] chr3 (15 HSPs)
chr3 (104-228)||(36302222-36302348)
chr3 (107-232)||(46853459-46853584)
chr3 (186-263)||(30301002-30301079)
chr3 (164-272)||(40147832-40147939)
chr3 (106-232)||(51285605-51285731)
chr3 (186-272)||(35058357-35058443)
chr3 (163-232)||(35264392-35264461)
chr3 (161-265)||(27266773-27266876)
chr3 (166-232)||(31708223-31708289)
chr3 (106-207)||(5406964-5407061)
chr3 (173-232)||(37335025-37335084)
chr3 (106-225)||(40136096-40136214)
chr3 (122-232)||(3776557-3776667)
chr3 (161-231)||(35253446-35253516)
chr3 (161-222)||(29475364-29475425)
[»] chr1 (21 HSPs)
chr1 (161-266)||(48548993-48549095)
chr1 (107-222)||(1233350-1233465)
chr1 (186-228)||(28287340-28287382)
chr1 (167-232)||(213522-213587)
chr1 (160-225)||(1514385-1514450)
chr1 (102-203)||(6932104-6932205)
chr1 (186-272)||(8381962-8382047)
chr1 (186-230)||(20026168-20026212)
chr1 (186-230)||(24587949-24587993)
chr1 (160-224)||(52263625-52263689)
chr1 (161-232)||(4458421-4458492)
chr1 (161-232)||(34915101-34915172)
chr1 (186-232)||(7790646-7790692)
chr1 (187-232)||(47892393-47892438)
chr1 (164-232)||(3016197-3016265)
chr1 (172-232)||(10324928-10324988)
chr1 (192-232)||(17284131-17284171)
chr1 (161-232)||(30557539-30557608)
chr1 (176-228)||(30850393-30850445)
chr1 (134-198)||(35961437-35961501)
chr1 (173-229)||(52339719-52339775)
[»] chr8 (9 HSPs)
chr8 (123-228)||(16972005-16972110)
chr8 (161-228)||(32927931-32927998)
chr8 (161-232)||(35495295-35495366)
chr8 (186-232)||(13384658-13384704)
chr8 (161-232)||(32767422-32767495)
chr8 (107-153)||(38386430-38386476)
chr8 (103-203)||(2778577-2778677)
chr8 (124-232)||(26100088-26100196)
chr8 (102-130)||(43024963-43024991)
[»] chr5 (8 HSPs)
chr5 (107-232)||(15368508-15368632)
chr5 (161-229)||(8591519-8591587)
chr5 (126-213)||(35138967-35139054)
chr5 (162-232)||(36639972-36640042)
chr5 (185-222)||(7925431-7925468)
chr5 (102-147)||(9952555-9952600)
chr5 (187-231)||(9185020-9185064)
chr5 (163-207)||(37886019-37886063)


Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 34898950 - 34898656
Alignment:
Q  11 cacagaggtcccgttcttgccatgatcataagcagctacggtaggcctctccctctagtagtcttttcaaaattaagtgtatgcttggcgttgacaaaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  34898950 cacagaggtcccgttcttgccatgatcataagcagctacggtaggcctctccctctagtagtattttcaaaattaagtgtatgtttggcgttgacaaaaa 34898851  T
Q  111 ttgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcga 210  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  34898850 ttgattttgattgaattgattctggc-taaagtgagtcgaaggtaatacaatttatg-ttcgatacatttgtgttaaagtgagttgaacaataaattcga 34898753  T
Q  211 gtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattctcaccacttatttgctaacttactgtttcttcgtct 307  Q
    ||||||||||||||||||||||       ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34898752 gtgttaaaatcaattctagaataaaaaaactctaatttctagcttcaagtagaatcgattctcaccacttatttgctaatttactgtttcttcgtct 34898656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 1485125 - 1485235
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 260  Q
    ||||| |||| |||||| |  ||| |||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||| |||||||    
T  1485125 atttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaat-caaaagctccaatttctagattcaagt 1485223  T
Q  261 agaatcgattct 272  Q
    |||||| |||||    
T  1485224 agaatcaattct 1485235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 34621041 - 34620921
Alignment:
Q  112 tgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgag 211  Q
    ||||||||| ||||| ||||||||||  || ||||| |||| |||    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||    
T  34621041 tgattttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttag 34620942  T
Q  212 tgttaaaatcaattctagaat 232  Q
    ||| |||||||||||||||||    
T  34620941 tgtaaaaatcaattctagaat 34620921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 34748478 - 34748358
Alignment:
Q  112 tgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgag 211  Q
    ||||||||| ||||| ||||||||||  || ||||| |||| |||    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||    
T  34748478 tgattttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttag 34748379  T
Q  212 tgttaaaatcaattctagaat 232  Q
    ||| |||||||||||||||||    
T  34748378 tgtaaaaatcaattctagaat 34748358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 882842 - 882728
Alignment:
Q  111 ttgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcga 210  Q
    |||| ||||| |||||||||||| | | ||| ||||| |||| ||| |  |||||||||| ||||||||| ||  |||||||||| ||||||||||| ||    
T  882842 ttgagtttgagtgaattgattctagttaaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttga 882743  T
Q  211 gtgttaaaatcaatt 225  Q
     ||| ||||||||||    
T  882742 atgtaaaaatcaatt 882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 34027359 - 34027467
Alignment:
Q  124 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 223  Q
    |||||||| ||||| ||||||||| |||  | | ||  |||||| || |||| |||| ||| | ||||||||||| |||||||| |||||| ||||||||    
T  34027359 aattgattgtggctaaaagtgagttgaaagtgagacggtttatggttagatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaa 34027458  T
Q  224 ttctagaat 232  Q
    |||||||||    
T  34027459 ttctagaat 34027467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 31305826 - 31305897
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||| |||| |||  ||| |||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  31305826 atttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaat 31305897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 2234595 - 2234550
Alignment:
Q  188 agtgagttgaacaa-taaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  2234595 agtgagttgaacaaataaatttgagtgttaaaatcaattctagaat 2234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 30926790 - 30926868
Alignment:
Q  194 ttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaag-tagaatcgattct 272  Q
    |||||||||||||| |||||| |||||||||||||||||       |||||||||||||||||||| ||||||| |||||    
T  30926790 ttgaacaataaatttgagtgtaaaaatcaattctagaat-aaaaaactccaatttctagcttcaagttagaatccattct 30926868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 25388219 - 25388116
Alignment:
Q  124 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 223  Q
    ||||||||||| |||||| ||||| | || |||||  |||||  ||| |||| |||  ||| |||||||||||| ||||||||| |||||| ||||||||    
T  25388219 aattgattctgacttaaaatgagttggaggtaatatgatttacatttggatatatttatgtaaaagtgagttga-caataaatttgagtgtcaaaatcaa 25388121  T
Q  224 ttcta 228  Q
    |||||    
T  25388120 ttcta 25388116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 4911014 - 4910943
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||| ||||||||  ||| ||||||||| |||| ||||||| |  ||| |||||||||||||||||    
T  4911014 atttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaat 4910943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 434163 - 434253
Alignment:
Q  109 aattgattttga-ttgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaa 198  Q
    |||||||||||| |||||| |||| ||||| ||||||||| | || ||| |  |||| ||||| |||| |||||||| |||||||||||||    
T  434163 aattgattttgagttgaatggattatggctaaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaa 434253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 19601372 - 19601426
Alignment:
Q  102 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataa 156  Q
    |||||||||||||||||||||||||||||| |  || | ||||||| ||||||||    
T  19601372 tgacaaaaattgattttgattgaattgattttaactaatagtgagttgaagataa 19601426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 34026417 - 34026459
Alignment:
Q  114 attttgattgaattgattctggcttaaagtgagtcgaagataa 156  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||    
T  34026417 attttgagtgaattgattctggctaaaagtgagttgaagataa 34026459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 852623 - 852567
Alignment:
Q  176 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||| ||| |||||||||| ||||||| ||| | |||| |||||||||||||||||    
T  852623 cattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaat 852567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 17225947 - 17225887
Alignment:
Q  172 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||||||| ||| ||| |||||||||| ||||||| |  ||| |||||||||||||||||    
T  17225947 gatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaat 17225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 27572029 - 27571858
Alignment:
Q  100 gttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaac 199  Q
    ||||||||||||||||||||  |||||||||| ||||| |||||||||  ||| ||| |  ||||||| || ||||||||  ||| || ||||||||||     
T  27572029 gttgacaaaaattgattttgggtgaattgattatggctaaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaat 27571930  T
Q  200 aataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 272  Q
    |||||| | ||||||||||||||||||||||||       |||||||||||| |||||||||||||| |||||    
T  27571929 aataaacttgagtgttaaaatcaattctagaat-caaaagctccaatttctaacttcaagtagaatcaattct 27571858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 272
Target Start/End: Original strand, 38123598 - 38123755
Alignment:
Q  114 attttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 213  Q
    ||||||| | |||||||| || || ||| ||||| |||| |||   ||||| ||||  || |||||| ||| |||||||||||| ||||||||| |||||    
T  38123598 attttgagtaaattgattatgactaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtg 38123697  T
Q  214 ttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 272  Q
    | |||||||||||||||||       || |||||||||||||||||||||||| |||||    
T  38123698 taaaaatcaattctagaat-tagaagctacaatttctagcttcaagtagaatcaattct 38123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 232
Target Start/End: Complemental strand, 45557523 - 45557400
Alignment:
Q  109 aattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattc 208  Q
    |||||||||||| ||||||||||||| || ||||||||| |||| |||    |||| ||||| ||||||||| ||| |||||||||||| | | |||||     
T  45557523 aattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaattt 45557424  T
Q  209 gagtgttaaaatcaattctagaat 232  Q
    | |||| ||||||||| |||||||    
T  45557423 gtgtgtaaaaatcaatcctagaat 45557400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 40561678 - 40561806
Alignment:
Q  102 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 201  Q
    |||||||| |||||||||| |||||||||||| |   ||| ||||| |||  |||    |||||||||| ||||||||| ||| ||||||||||||||||    
T  40561678 tgacaaaagttgattttgagtgaattgattctagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaa 40561777  T
Q  202 taaattcgagtgttaaaatcaattctaga 230  Q
    || ||| ||||||  |||| |||||||||    
T  40561778 tatatttgagtgtataaattaattctaga 40561806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 212
Target Start/End: Original strand, 33853404 - 33853514
Alignment:
Q  102 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 201  Q
    ||||||||||||||||| | |||||||||||||||| | ||||||| |||| |||    |||||||||| ||||||||| ||| ||||  || || ||||    
T  33853404 tgacaaaaattgatttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgtaaaagcaagctggacaa 33853503  T
Q  202 taaattcgagt 212  Q
    |||||| ||||    
T  33853504 taaatttgagt 33853514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 22310385 - 22310509
Alignment:
Q  108 aaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 207  Q
    ||||||||||||| || ||||| | |||   ||| ||||| |||||||| |  |||||||||| |||||||||  || ||||||| ||||| ||||||||    
T  22310385 aaattgattttgagtggattgagtttggtaaaaattgagttgaagataaaaagatttatgtttggatacattctcgtaaaagtgaattgaaaaataaatt 22310484  T
Q  208 cgagtgttaaaatcaattctagaat 232  Q
      ||||| ||||| |||||||||||    
T  22310485 taagtgtaaaaattaattctagaat 22310509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 40795969 - 40796035
Alignment:
Q  162 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 228  Q
    |||||| || ||||||||| ||| ||||||| ||||| | |||||| ||||||||||||||||||||    
T  40795969 tttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaattcta 40796035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 12306866 - 12306760
Alignment:
Q  124 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa--taaattcgagtgttaaaatc 221  Q
    |||||||||||||| ||||||||| ||||||||    |||||||||| | || |||| ||| ||||||||||||| |   | |||| |||||| ||||||    
T  12306866 aattgattctggctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaatatagtgaatttgagtgtaaaaatc 12306767  T
Q  222 aattcta 228  Q
    |||||||    
T  12306766 aattcta 12306760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 41788422 - 41788353
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 230  Q
    ||||||||||  |||||||  | | |||||||||||||||  ||||| ||||||||||||||||| ||||    
T  41788422 atttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattataga 41788353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Complemental strand, 45823336 - 45823307
Alignment:
Q  102 tgacaaaaattgattttgattgaattgatt 131  Q
    ||||||||||||||||||||||||||||||    
T  45823336 tgacaaaaattgattttgattgaattgatt 45823307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 40491721 - 40491613
Alignment:
Q  124 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 223  Q
    |||||||| || || ||||||||| |||| |||    |||||| ||| ||||||||| ||| |||||||||| |||  |||||| | |||| ||| ||||    
T  40491721 aattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaa 40491622  T
Q  224 ttctagaat 232  Q
    |||||||||    
T  40491621 ttctagaat 40491613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 33843878 - 33843763
Alignment:
Q  100 gttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaac 199  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | |  |||    |||||||||| |||| |||| ||| | ||||||||||||    
T  33843878 gttgacaaaaattgattttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaac 33843779  T
Q  200 aataaattcgagtgtt 215  Q
    ||||||||||||||||    
T  33843778 aataaattcgagtgtt 33843763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 55927749 - 55927820
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||||||| |||||| |  ||||||||||||||    
T  55927749 atttatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaat 55927820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 4243468 - 4243422
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||    
T  4243468 aaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaat 4243422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 33844052 - 33844012
Alignment:
Q  192 agttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  33844052 agttgaacaataaatttgagtgttaaaatcaattttagaat 33844012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 8604601 - 8604672
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||| ||||||||| ||| ||||||  || ||| ||||||| | |||| |||||||||||||||||    
T  8604601 atttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaat 8604672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 48045675 - 48045726
Alignment:
Q  105 caaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataa 156  Q
    |||||||||||||||| | |||||||||||||| ||| ||||| ||||||||    
T  48045675 caaaaattgattttgagtaaattgattctggctaaaactgagttgaagataa 48045726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 2207160 - 2207114
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  2207160 aaagtgagttgaaccataaattggagtgttgaaatcaattatagaat 2207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 32818354 - 32818420
Alignment:
Q  166 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||| ||||||||| ||| ||||| |||||||| ||||||| | |||  |||||||||||||||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaat 32818420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 25319153 - 25319108
Alignment:
Q  162 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 207  Q
    ||||||||||||||||||   || ||||||||||||||||||||||    
T  25319153 tttatgtttcgatacatttacgtaaaagtgagttgaacaataaatt 25319108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 32100373 - 32100336
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaa 223  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  32100373 aaagtgagttgaacaataaatttgagtgtaaaaatcaa 32100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 10185289 - 10185229
Alignment:
Q  172 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||||||  ||| |||||||||| ||||||||||| |||||| || ||||||| ||||||    
T  10185289 gatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaat 10185229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 16552050 - 16551993
Alignment:
Q  172 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 231  Q
    ||||||||| ||| |||||||||||||| |||||||   |||| ||||||||||||||||    
T  16552050 gatacattcatgtaaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaa 16551993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 1976788 - 1976916
Alignment:
Q  106 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 205  Q
    |||||||| |||||| ||||||||||||||||  || ||||| |||| |||  | | |||||||| ||||||||| ||| |||||||||| |||||||||    
T  1976788 aaaaattgtttttgagtgaattgattctggctagaattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaa 1976887  T
Q  206 ttcgagtgt--taaaatcaattctagaat 232  Q
    || ||||||   |||||||||||||||||    
T  1976888 tttgagtgtaaaaaaatcaattctagaat 1976916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 44439360 - 44439289
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||| ||||  ||  ||| |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  44439360 atttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaat 44439289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 15220840 - 15220886
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 207  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  15220840 atttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 16013683 - 16013760
Alignment:
Q  161 atttatgtttcgatacattcgtgt------taaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||| |||||||||||||      ||||||||||||| ||||||||| |||||| ||||||| |||||||||    
T  16013683 atttatgtttggatacattcgtgtaaactgtaaagtgagttgaccaataaatttgagtgtaaaaatcatttctagaat 16013760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 37420171 - 37420243
Alignment:
Q  160 aatttatgtttcgatacattcgt--gttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 230  Q
    |||||||||||| ||| || |||  || ||||||||||||| |||||||| |||||| |||||||||||||||    
T  37420171 aatttatgtttcaatatatacgtaagtaaaagtgagttgaataataaatttgagtgtaaaaatcaattctaga 37420243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 42982639 - 42982546
Alignment:
Q  172 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatc 266  Q
    ||||||||| ||| ||||||||||| | |||||||| | |||| |||||||||||| ||||       || ||||||||||||||||||||||||    
T  42982639 gatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaat-caaaagctacaatttctagcttcaagtagaatc 42982546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 42741058 - 42741012
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||||||||| ||| |||||| |||||| |||||||||||||||||    
T  42741058 aaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaat 42741012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 11650673 - 11650706
Alignment:
Q  98 gcgttgacaaaaattgattttgattgaattgatt 131  Q
    ||||||||||||||||||||||| ||||||||||    
T  11650673 gcgttgacaaaaattgattttgagtgaattgatt 11650706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 40401621 - 40401666
Alignment:
Q  160 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 205  Q
    ||||||||||| ||||||||| ||| ||||| ||||||||||||||    
T  40401621 aatttatgtttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 3476349 - 3476393
Alignment:
Q  102 tgacaaaaattgattttgattgaattgattctggcttaaagtgag 146  Q
    ||||||||||||||||| | |||||||||||||| | ||||||||    
T  3476349 tgacaaaaattgattttaagtgaattgattctggataaaagtgag 3476393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 4908896 - 4908852
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 205  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||    
T  4908896 atttatgtttggatacattcatgttaaagtggattgaacaataaa 4908852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 14093 - 14164
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||| ||||||||| ||| ||||||||||||| |||||||| |||||| |||||||||||||||||    
T  14093 atttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaat 14164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 36302348 - 36302222
Alignment:
Q  104 acaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataataca--atttatgtttcgatacattcgtgttaaagtgagttgaacaa 201  Q
    ||||||||||||||||| ||||||||||| || | ||| ||||| |||||||| | |  ||| |||| | ||| ||||| ||| ||||||||||||||||    
T  36302348 acaaaaattgattttgagtgaattgattccggttaaaattgagttgaagataaaaaatgattaatgtgtggattcattcatgtaaaagtgagttgaacaa 36302249  T
Q  202 taaattcgagtgttaaaatcaattcta 228  Q
    ||||||  |||| ||||||||||||||    
T  36302248 taaatttaagtgctaaaatcaattcta 36302222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 46853459 - 46853584
Alignment:
Q  107 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 206  Q
    ||||||||| |||| |||||||||| |||||  |||| ||| |||| |||    ||||||||   |||| |||  ||| |||||||||||||||||||||    
T  46853459 aaaattgatcttgagtgaattgattttggctacaagtaagttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaat 46853558  T
Q  207 tcgagtgttaaaatcaattctagaat 232  Q
    | ||||||||||||||||||||||||    
T  46853559 ttgagtgttaaaatcaattctagaat 46853584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 30301002 - 30301079
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtaga 263  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||       ||||||||||||||||||| ||||    
T  30301002 aaagtgggttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttcaaataga 30301079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 40147832 - 40147939
Alignment:
Q  164 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtaga 263  Q
    ||||||| ||||||||  ||| |||||||||||||  |||||||| |||||| ||||||||||||||||       |||||| ||||||||| |||||||    
T  40147832 tatgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaat-caaaagctccaaattctagcttgaagtaga 40147930  T
Q  264 atcgattct 272  Q
    ||| |||||    
T  40147931 atcaattct 40147939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 51285731 - 51285605
Alignment:
Q  106 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 205  Q
    ||||||||||||||| |||||| ||| ||||| ||||||||| |||  |||   |||| ||| || ||||||||| ||| |||| | ||| ||||| |||    
T  51285731 aaaaattgattttgagtgaatttattatggctaaaagtgagttgaatgtaaagtaattcatgcttggatacattcatgtaaaagcgggttaaacaacaaa 51285632  T
Q  206 ttcgagtgttaaaatcaattctagaat 232  Q
    || |||||  |||||||||||||||||    
T  51285631 tttgagtgcaaaaatcaattctagaat 51285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 35058443 - 35058357
Alignment:
Q  186 aaagtgagttgaacaataa-attcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 272  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||       ||| ||||||||||| ||||||||||| |||||    
T  35058443 aaagtgagttgaacaataatatttgagtgttaaaatcaattctagaat-caaaagctcgaatttctagctccaagtagaatcaattct 35058357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 35264392 - 35264461
Alignment:
Q  163 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||| | ||||||| ||| ||| ||| ||||||||||||||  |||||||||||||||||||||||    
T  35264392 ttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaat 35264461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 27266773 - 27266876
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 260  Q
    |||||||||| ||||  ||| ||| ||||| |||||||||||||||| |||||| ||||| |||||| ||||       || ||||||||||||||||||    
T  27266773 atttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaat-cattagctacaatttctagcttcaagt 27266871  T
Q  261 agaat 265  Q
    |||||    
T  27266872 agaat 27266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 31708223 - 31708289
Alignment:
Q  166 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||| ||||||||| ||| |||||||||||||  ||||||| | |||||| |||||||||||||||    
T  31708223 tgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaat 31708289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 5407061 - 5406964
Alignment:
Q  106 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 205  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||| |||| ||    || |||||||| ||||||||| ||| ||||||| ||||| | ||||    
T  5407061 aaaaattgattttgagtgaattgattctagctaaaattgagttgaaggta----aagttatgtttggatacattcatgtaaaagtgatttgaagagtaaa 5406966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 37335025 - 37335084
Alignment:
Q  173 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||| | | ||| ||||||||||||| ||||| ||||| |||||||||||||||||    
T  37335025 atacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaat 37335084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 40136096 - 40136214
Alignment:
Q  106 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 205  Q
    ||||||||||||||| |||||| |||||||| |||||||| | |||  ||| | | ||| |||||  |||||||  ||| ||| |||||| |||||| ||    
T  40136096 aaaaattgattttgaatgaattaattctggc-taaagtgacttgaatgtaaaatattttttgttttaatacatttttgtaaaaatgagttcaacaatgaa 40136194  T
Q  206 ttcgagtgttaaaatcaatt 225  Q
    || || ||||||||||||||    
T  40136195 tttgattgttaaaatcaatt 40136214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 3776667 - 3776557
Alignment:
Q  122 tgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatc 221  Q
    |||||||||||||||| ||| ||||| |||  |||    ||||||| || ||||||||  ||| |||||||||| | ||| ||||| |||||| |||||     
T  3776667 tgaattgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaatt 3776568  T
Q  222 aattctagaat 232  Q
    |||||||||||    
T  3776567 aattctagaat 3776557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 35253446 - 35253516
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 231  Q
    |||||| ||| || ||| || ||| |||||||||||||  ||||||| |||||| ||||||||||||||||    
T  35253446 atttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaattctagaa 35253516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 29475364 - 29475425
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 222  Q
    |||||||||| ||||| ||  ||| ||| |||||||||||| ||||| ||||||||||||||    
T  29475364 atttatgttttgatacgtttatgtcaaactgagttgaacaaaaaatttgagtgttaaaatca 29475425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 48548993 - 48549095
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 260  Q
    |||||||||| ||||||||  ||| |||||||||||||||||||||  |||| | |||||||||||||||||       || ||||||||||||||||||    
T  48548993 atttatgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaat-cagaagctacaatttctagcttcaagt 48549089  T
Q  261 agaatc 266  Q
    ||||||    
T  48549090 agaatc 48549095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 1233465 - 1233350
Alignment:
Q  107 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 206  Q
    |||||||||||| |||||||| ||| | | | ||  |||||  ||| ||| | ||||||||||| ||||||||| ||| |||||||||| ||||||||||    
T  1233465 aaaattgattttcattgaattaattttagttaaacatgagtttaaggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaat 1233366  T
Q  207 tcgagtgttaaaatca 222  Q
    | |||||| |||||||    
T  1233365 ttgagtgtaaaaatca 1233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 28287340 - 28287382
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaattcta 228  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  28287340 aaagttagttgaacaataaatttgagtgttaaaatcaattcta 28287382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 213522 - 213587
Alignment:
Q  167 gtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||| ||| ||||| ||| |||||||||||||||| ||||| |||| | |||||||||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaat 213587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 1514450 - 1514385
Alignment:
Q  160 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaatt 225  Q
    ||||| ||||| ||||||||| ||| ||| |||||||||||||||||| | |||| ||||||||||    
T  1514450 aatttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaatt 1514385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 6932104 - 6932205
Alignment:
Q  102 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 201  Q
    |||||||| |||||||||| ||||||||||||| || ||||||||| |||  ||| |  || |  |||| ||| ||||||||| || |||||||||||||    
T  6932104 tgacaaaatttgattttgaatgaattgattctgactaaaagtgagttgaatgtaaaatgatcttcgtttggattcattcgtgtaaaggtgagttgaacaa 6932203  T
Q  202 ta 203  Q
    ||    
T  6932204 ta 6932205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 272
Target Start/End: Complemental strand, 8382047 - 8381962
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 272  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||        || |||||||||||||||||||||||| |||||    
T  8382047 aaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaa-ctagaggctacaatttctagcttcaagtagaatcaattct 8381962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 20026168 - 20026212
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 230  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||||    
T  20026168 aaagtgaattgaacaataaatttgagtgttcaaatcaattctaga 20026212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 24587993 - 24587949
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 230  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||    
T  24587993 aaagtgagttgaataataaatttgagtgttaaaatcaattataga 24587949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 52263625 - 52263689
Alignment:
Q  160 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaat 224  Q
    ||||||||||| ||||||||  ||| ||| |||||| ||||||||||| |||||| |||||||||    
T  52263625 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 52263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 4458492 - 4458421
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||| ||| |||||||||  || ||||||| ||| ||||||||||| |||||||||  ||||||||||||    
T  4458492 atttatatttggatacattcaggtaaaagtgaattgtacaataaattcaagtgttaaatccaattctagaat 4458421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 34915172 - 34915101
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||||||||  |||||||| ||| |||||||||||||  ||||| | | |||||| |||||||||||||||    
T  34915172 atttatgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaat 34915101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 7790646 - 7790692
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||||||||||||||| | |||| |||||||||| ||||||    
T  7790646 aaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaat 7790692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 47892393 - 47892438
Alignment:
Q  187 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||||||||||  ||  |||||||||||||||||||||||    
T  47892393 aagtgagttgaacaatatgttttagtgttaaaatcaattctagaat 47892438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 3016265 - 3016197
Alignment:
Q  164 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||||| ||||||||| ||| ||||||||||||||  ||||||   |||| || ||||||||||||||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaat 3016197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 10324928 - 10324988
Alignment:
Q  172 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||||||  ||| |||||||||  ||||||||||| |||||| |||||||||| ||||||    
T  10324928 gatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaat 10324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 17284171 - 17284131
Alignment:
Q  192 agttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  17284171 agttgaacaataaatttgagtgtaaaaatcaattttagaat 17284131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 30557608 - 30557539
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||| ||||| ||||||||| | | |||||||||||||| |||||||   |||| |||||||||||||||||    
T  30557608 atttgtgtttggatacattcatataaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaat 30557539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 30850393 - 30850445
Alignment:
Q  176 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 228  Q
    ||||| ||| |||||||||||||| ||||||| |  |||||||||||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaattcta 30850445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 35961501 - 35961437
Alignment:
Q  134 ggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaa 198  Q
    |||| ||||||||| |||| ||| |  ||||||||||| |||||||| ||| |||||||||||||    
T  35961501 ggctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 52339719 - 52339775
Alignment:
Q  173 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 229  Q
    |||||||||||| || |||| |||||||||||||| |||| | ||| ||||||||||    
T  52339719 atacattcgtgtaaatgtgacttgaacaataaatttgagtataaaactcaattctag 52339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 16972005 - 16972110
Alignment:
Q  123 gaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 222  Q
    |||||||||| | || ||||||||| |||| ||| |  |||| |||||  |||||||| ||| ||||||| |||||||||||||| | || | |||||||    
T  16972005 gaattgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatca 16972104  T
Q  223 attcta 228  Q
    ||||||    
T  16972105 attcta 16972110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 32927998 - 32927931
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 228  Q
    |||| ||||| ||||||||| ||| |||||||||||||| ||||||| | |||| ||||| |||||||    
T  32927998 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattcta 32927931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 35495366 - 35495295
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||| |||||||||   | ||||||| |||||||||||||| |||| | |||||||||| ||||||    
T  35495366 atttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatagaat 35495295  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 13384658 - 13384704
Alignment:
Q  186 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||||||| ||||||| | |||| |||||||||||||||||    
T  13384658 aaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaat 13384704  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 32767495 - 32767422
Alignment:
Q  161 atttatgtttcgatacattc--gtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    |||||||||| |||||||||  |||| ||||||||||||||||||||||  ||||| ||| ||| |||| ||||    
T  32767495 atttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaat 32767422  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 38386476 - 38386430
Alignment:
Q  107 aaaattgattttgattgaattgattctggcttaaagtgagtcgaaga 153  Q
    ||||||||||||||| ||||||||||||||| ||||| ||| |||||    
T  38386476 aaaattgattttgatagaattgattctggctaaaagtaagttgaaga 38386430  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 2778677 - 2778577
Alignment:
Q  103 gacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaat 202  Q
    ||||||||||||||||   |||| ||||||| ||| ||||||||| ||||||||    |||||| ||| |||| |||  ||  |||||||||||||||||    
T  2778677 gacaaaaattgattttatgtgaactgattctagctaaaagtgagttgaagataaagtgatttatttttggataaatttatgcaaaagtgagttgaacaat 2778578  T
Q  203 a 203  Q
    |    
T  2778577 a 2778577  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 26100088 - 26100196
Alignment:
Q  124 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 223  Q
    ||||||||||| || |||  |||| |||| |||  | |||| ||||| ||| ||||  ||| |||||||||||||| ||||||| | |||| ||||||||    
T  26100088 aattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaa 26100187  T
Q  224 ttctagaat 232  Q
    || ||||||    
T  26100188 ttatagaat 26100196  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 130
Target Start/End: Complemental strand, 43024991 - 43024963
Alignment:
Q  102 tgacaaaaattgattttgattgaattgat 130  Q
    |||||||||||||||||||||||||||||    
T  43024991 tgacaaaaattgattttgattgaattgat 43024963  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 15368632 - 15368508
Alignment:
Q  107 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 206  Q
    |||||||||||||| |||||||||||||||| ||| ||||| ||||  ||    ||||||||||  |||||| | ||| ||||||| |||||||| | ||    
T  15368632 aaaattgattttgagtgaattgattctggctgaaattgagttgaagggaa-gtgatttatgtttgaatacatccatgtaaaagtgacttgaacaacatat 15368534  T
Q  207 tcgagtgttaaaatcaattctagaat 232  Q
    | |||||| || ||||||| ||||||    
T  15368533 ttgagtgtaaagatcaattatagaat 15368508  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 8591587 - 8591519
Alignment:
Q  161 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 229  Q
    |||||| ||| ||||||||| | | |||||||||||||||| ||||| |||||  ||||||||||||||    
T  8591587 atttatatttggatacattcctataaaagtgagttgaacaacaaatttgagtgaaaaaatcaattctag 8591519  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 35138967 - 35139054
Alignment:
Q  126 ttgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 213  Q
    ||||||||| || ||| ||||| |||| ||| |  |||||||||  ||||||||| | | |||||||||||||||||||||| |||||    
T  35138967 ttgattctgtctaaaattgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 35139054  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 36640042 - 36639972
Alignment:
Q  162 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 232  Q
    ||||||||| ||||  ||| ||| |||||||| |||||| |||||| |||||| |||| ||||||||||||    
T  36640042 tttatgttttgataggttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaat 36639972  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 7925468 - 7925431
Alignment:
Q  185 taaagtgagttgaacaataaattcgagtgttaaaatca 222  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  7925468 taaagtgagttgaacaataaatttgagtgtaaaaatca 7925431  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 9952555 - 9952600
Alignment:
Q  102 tgacaaaaattgattttgattgaattgattctggcttaaagtgagt 147  Q
    ||||||||||||||||||| |||||||||| ||| | |||||||||    
T  9952555 tgacaaaaattgattttgaatgaattgattatggataaaagtgagt 9952600  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 9185020 - 9185064
Alignment:
Q  187 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 231  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||    
T  9185020 aagtgagttgaacgataaatttaaatgttaaaatcaattctagaa 9185064  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 37886019 - 37886063
Alignment:
Q  163 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 207  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||    
T  37886019 ttatgtttgaatacatttgtgtaaaagtgagttgaacaataaatt 37886063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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