View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12154_low_7 (Length: 305)
Name: NF12154_low_7
Description: NF12154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12154_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 1987361 - 1987195
Alignment:
| Q |
137 |
aaaaaatatatttcaaatacttttgtatttataacatgtctttttgctcaaatttacctctcacatcttattgaaaaataatcaaatattaattacaaat |
236 |
Q |
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| T |
1987361 |
aaaaaatatatttcaaatacttttgtatttataacatgtctttttgctcaaatttacctctcacatcttattgaaaaataatcaaatattaattacaaat |
1987262 |
T |
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| Q |
237 |
attatttcatgtcattaaaatgttatattcatcaactaatttaatatccaattttataaaacactac |
303 |
Q |
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| T |
1987261 |
attatttcatgtcattaaaattttatattcatcaactaatttaatatccaattttataaaacactac |
1987195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 1988111 - 1987995
Alignment:
| Q |
17 |
atgaataatattgttgacaatgtttgtgtcaccaacacagttcatgaaaacattgctcaagaatatacttgtgctactaattcacaacaattaccacctt |
116 |
Q |
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| T |
1988111 |
atgaataatattgttgacaatgtttgtgtcaccaacacagttcatgagaacattgctcaagaatatacttgggctactaattcacaacaattaccacctt |
1988012 |
T |
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| Q |
117 |
ctcaatacattttatct |
133 |
Q |
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| T |
1988011 |
ctcaatacattttatct |
1987995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 1995019 - 1994957
Alignment:
| Q |
67 |
cattgctcaagaatatacttgtgctactaattcacaacaattaccaccttctcaatacatttt |
129 |
Q |
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|||| |||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
1995019 |
catttctcaagaatataattgtcctactaattcacaacaaatagcaccttctcaatacatttt |
1994957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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