View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12155_high_2 (Length: 614)
Name: NF12155_high_2
Description: NF12155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12155_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 580; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 9 - 596
Target Start/End: Original strand, 47075059 - 47075646
Alignment:
| Q |
9 |
aatatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggattt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075059 |
aatatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggattt |
47075158 |
T |
|
| Q |
109 |
aaattgttgtctttaacttcagtcttgcaaataggaacagaatctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaagcaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075159 |
aaattgttgtctttaacttcagtcttgcaaataggaacagaacctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaagcaag |
47075258 |
T |
|
| Q |
209 |
atgagttttaagaatgtaataaataaaacggatatgatggagcttggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075259 |
atgagttttaagaatgtaataaataaaacggatatgatggagcttggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaaca |
47075358 |
T |
|
| Q |
309 |
acggaagataatctcaacagcactccttgcagcaacagtctcctcagcatgaatggtaattgccccttgttttctttgaccactaatccctcttttgttt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075359 |
acggaagataatctcaacagcactccttgcagcaacagtctcctcagcatgaatggtaattgccccttgttttctttgaccactaatccctcttttgttt |
47075458 |
T |
|
| Q |
409 |
tgaagctttacagttaagctccggcttggtttggtcactatctgttaaccacatcacacaaaaacaatagagacaccaatgtcacacaaagtctataatc |
508 |
Q |
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| T |
47075459 |
tgaagctttacagttaagctccggcttggtttggtcactatctgttaaccacatcacacaaaaacaatagagacaccaatgtcacacaaagtctataatc |
47075558 |
T |
|
| Q |
509 |
ttaattctgtatgcaacagagttagcaagcaactataattatgctgaccagctacatgtgtgtttatttcattgaaatgtgtatttgt |
596 |
Q |
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| T |
47075559 |
ttaattctggatgcaacagagttagcaagcaactataattatgctgaccagctacatgtgtgtttatttcattgaaatgtgtatttgt |
47075646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 47057258 - 47057452
Alignment:
| Q |
10 |
atatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggattta |
109 |
Q |
| |
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||||||| |||||| |||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
47057258 |
atatgatttaacattagacatgttgtgttcaaagatcgcaagcttactatacttccaaactgctggaaattaagacaaactggtttccattttggattta |
47057357 |
T |
|
| Q |
110 |
aatt-gttgtctttaacttcagtcttgcaaataggaacagaatctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaa |
203 |
Q |
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| T |
47057358 |
aatttgttgtctataacttcagtcttgcaaataggaacagaacctccactctcaaccattcttgatatccttagaaaaggatcctacaagaaaaa |
47057452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 254 - 514
Target Start/End: Original strand, 47057666 - 47057921
Alignment:
| Q |
254 |
ggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaacaacggaagataatctcaacagcactccttgcagcaacagtctcctc |
353 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
47057666 |
ggtattgaatatgtacacttttagaaaaaatgtctttgttatccaagcgagaacaacggaagataatctcaacagcactccttgaagcaacagtctcttc |
47057765 |
T |
|
| Q |
354 |
agcatgaatggtaattgccccttgttttctttgaccactaatcc-ctcttttgttttgaagctttacagttaagctccggcttggtttggtcactatctg |
452 |
Q |
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|||| |||||||||| || | |||||| || || | |||| || | | | |||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
47057766 |
agcaagaatggtaataattccaagatttcttcgaaca-tgatcctctttgtagctttgaagctttaaggttaagcttcggcttggtttggtcactatctg |
47057864 |
T |
|
| Q |
453 |
ttaaccacatcacacaaaaacaatagagacaccaatgtcacacaaagtctataatcttaatt |
514 |
Q |
| |
|
|| ||| | |||||| |||| |||||||| |||||||||||||||| |||||||||||| |
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| T |
47057865 |
tt--ccatagcacacacaaac---agagacactaatgtcacacaaagtccataatcttaatt |
47057921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 18230340 - 18230146
Alignment:
| Q |
9 |
aatatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggattt |
108 |
Q |
| |
|
|||||| ||||||||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18230340 |
aatatggtgtaacatcggacatgttgtgcacaaagatcgaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggattt |
18230241 |
T |
|
| Q |
109 |
aaattgttgtctttaacttcagtcttgcaaataggaacagaatctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaa |
203 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||| ||||||||||||| | || ||||||||||||||||||||||| ||||||||| |
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| T |
18230240 |
aaattgttgtctataacttcagtcttgaaaataggaacagttcctccactctcaaccactcgtgatatccttagaaaaggatcctgcaagaaaaa |
18230146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 240 - 454
Target Start/End: Complemental strand, 18230076 - 18229862
Alignment:
| Q |
240 |
atatgatggagcttggtattgaatatttacacttttagataaaatgtctttgttatccaagtgagaacaacggaagataatctcaacagcactccttgca |
339 |
Q |
| |
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|||||||| |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||| || ||||| |
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| T |
18230076 |
atatgatgaagctaggtattgaatatgtacacttttagaaaaaatgtctttgttatccaagtgagagcagcggaagataatatcaacagcattctttgca |
18229977 |
T |
|
| Q |
340 |
gcaacagtctcctcagcatgaatggtaattgccccttgttttctttgaccactaatccctcttttgttttgaagctttacagttaagctccggcttggtt |
439 |
Q |
| |
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||||| || |||||||| |||||||||||||||||||| ||| |||||| | || |||||| ||||||||||||| ||| |||||||||| |||| ||| |
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| T |
18229976 |
gcaactgtttcctcagcgtgaatggtaattgccccttgatttatttgactaatattccctcctttgttttgaagccttatggttaagctcctgctttgtt |
18229877 |
T |
|
| Q |
440 |
tggtcactatctgtt |
454 |
Q |
| |
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||||||| ||||||| |
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| T |
18229876 |
tggtcacaatctgtt |
18229862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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