View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12155_low_2 (Length: 740)

Name: NF12155_low_2
Description: NF12155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12155_low_2
NF12155_low_2
[»] chr4 (4 HSPs)
chr4 (291-559)||(22466951-22467220)
chr4 (618-732)||(22466738-22466852)
chr4 (210-292)||(31525493-31525577)
chr4 (308-554)||(4537795-4538044)
[»] chr2 (2 HSPs)
chr2 (130-292)||(10983066-10983228)
chr2 (254-292)||(3081203-3081241)
[»] chr6 (1 HSPs)
chr6 (429-559)||(27908549-27908678)
[»] chr1 (4 HSPs)
chr1 (210-294)||(49195449-49195535)
chr1 (254-293)||(40908315-40908354)
chr1 (254-292)||(46566569-46566607)
chr1 (226-293)||(12606644-12606712)
[»] chr3 (1 HSPs)
chr3 (226-293)||(33365924-33365992)
[»] chr5 (4 HSPs)
chr5 (359-557)||(29997562-29997762)
chr5 (226-292)||(12870155-12870222)
chr5 (254-292)||(43469642-43469680)
chr5 (409-478)||(4368904-4368973)
[»] chr8 (1 HSPs)
chr8 (622-673)||(31037149-31037200)
[»] chr7 (1 HSPs)
chr7 (254-292)||(10646145-10646183)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 291 - 559
Target Start/End: Complemental strand, 22467220 - 22466951
Alignment:
Q  291 ataatacaaaagaactagaagttagtttactatgcaatgaagaagtttgtcaccatagtcttttgttccttgcgccacaagcaattgaagctgaagaaag 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22467220 ataatacaaaagaactagaagttagtttactatgcaatgaagaagttcatcaccatagtcttttgttccttgcgccacaagcaattgaagttgaagaaag 22467121  T
Q  391 tgt-agaattagaatttagttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttc 489  Q
    ||| ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22467120 tgttagaattagaatttagttgtaactattttgcttaagtttaagtgagttagttatgattgaatgatgtaaggatcacaatagtttataatcatccttc 22467021  T
Q  490 actgaattgctataaatatatgtaattgcttttattgcaagttaaaatgaaataatggttcattgaacta 559  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22467020 actgaattgctataaatacatgtaattgcttttattgcaagttaaaatgaaataatggttcattgaacta 22466951  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 618 - 732
Target Start/End: Complemental strand, 22466852 - 22466738
Alignment:
Q  618 gttaactcaatatggtatcatgagccttttaatatgaaagtacttcttctgcaagcnnnnnnnccatggcacctcgcaacaacaatagtgcaacaaactc 717  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||       |||||||||||||||||||||||||||||||||||||    
T  22466852 gttaactcaatatggtatcatgagcctttcaatatgaaagtacttctttcgcaagcttttcttccatggcacctcgcaacaacaatagtgcaacaaactc 22466753  T
Q  718 tggagcacaggttct 732  Q
    |||||||||||||||    
T  22466752 tggagcacaggttct 22466738  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 31525493 - 31525577
Alignment:
Q  210 attaatgacagattaag-agggaaaaacaggattgtttaggggaa-actgccagctcatcaagtctggcttttataataaaggat 292  Q
    |||||| |||||||| | |||||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||    
T  31525493 attaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 31525577  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 308 - 554
Target Start/End: Complemental strand, 4538044 - 4537795
Alignment:
Q  308 gaagttagtttactatgcaatgaagaagtttgtcaccatagtcttttgttccttgcgccacaagcaattgaagctgaaga-aagtgtagaattagaattt 406  Q
    |||| |||||||||| | |||||||||| |   || ||||||| |  ||| ||||||  |||||||||||||||| |||| || | |||| |||||| ||    
T  4538044 gaagctagtttactaagtaatgaagaagatgagcatcatagtcctcagttacttgcgatacaagcaattgaagcttaagacaattttagacttagaaatt 4537945  T
Q  407 a-gttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcactgaattgctataaa 505  Q
      ||||| |||| ||| |||||||||||| ||||||||||||||||| |||    | ||||||  ||||||||    |||  |||||||| | | |||||    
T  4537944 ctgttgtgactacttttcttaagtttaggaaagttagttatgattgagtgaggcgaagatcacggtagtttatgccgatctatcactgaaatacaataaa 4537845  T
Q  506 tatatgtaattgcttttattgcaagttaaaatg-aaataatggttcattg 554  Q
    ||  ||||||| ||| ||||||||||||  ||| ||||||||||||||||    
T  4537844 tacttgtaattacttctattgcaagttacgatgaaaataatggttcattg 4537795  T

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Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 130 - 292
Target Start/End: Original strand, 10983066 - 10983228
Alignment:
Q  130 tgattggttgtttgatgtacatgaaaggtcacatttaatgaggctaatatgtagtgggtggttagcagataagccttgcaattaatgacagattaagagg 229  Q
    ||||||||||  ||||||||||||||||||||| | |||| | | || | | ||||||||||| |||||||||||||||||||||||||  |||| ||||    
T  10983066 tgattggttgaatgatgtacatgaaaggtcacaataaatgcgcccaagaggaagtgggtggttggcagataagccttgcaattaatgacgaattaggagg 10983165  T
Q  230 gaaaaacaggattgtttaggggaaactgccagctcatcaagtctggcttttataataaaggat 292  Q
    ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10983166 gaaaatcaggattgattagggcaaactgccagctcatcaagtctggcttttataataaaggat 10983228  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 3081241 - 3081203
Alignment:
Q  254 actgccagctcatcaagtctggcttttataataaaggat 292  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  3081241 actgccagctcatcaagtctggctttaatagtaaaggat 3081203  T

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Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 429 - 559
Target Start/End: Complemental strand, 27908678 - 27908549
Alignment:
Q  429 tttagggaagttagttatgattgaatgatataaggatcacaatagtttataatcatccttcactgaattgctataaatatatgtaattgcttttattgca 528  Q
    ||||||||||||||||||||| || |||   |||||||||||||||| |||||  ||||||||||||  |||||||||| |||||||||||| |||||||    
T  27908678 tttagggaagttagttatgatagagtgaagcaaggatcacaatagtt-ataatagtccttcactgaaaagctataaatacatgtaattgcttctattgca 27908580  T
Q  529 agttaaaatgaaataatggttcattgaacta 559  Q
    | ||||  ||||| |||||||||||||||||    
T  27908579 aattaatgtgaaaaaatggttcattgaacta 27908549  T

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Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 49195449 - 49195535
Alignment:
Q  210 attaatgacagattaag-agggaaaaacaggattgtttaggggaa-actgccagctcatcaagtctggcttttataataaaggataa 294  Q
    |||||| |||||||| | |||||||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  49195449 attaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggataa 49195535  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 40908354 - 40908315
Alignment:
Q  254 actgccagctcatcaagtctggcttttataataaaggata 293  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  40908354 actgccagctcatcaagtctggcttttatagtaaaggata 40908315  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 46566607 - 46566569
Alignment:
Q  254 actgccagctcatcaagtctggcttttataataaaggat 292  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  46566607 actgccagctcatcaaatctggcttttataataaaggat 46566569  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 12606644 - 12606712
Alignment:
Q  226 gagggaaaaacaggattgtttaggggaa-actgccagctcatcaagtctggcttttataataaaggata 293  Q
    |||||||||  |||| || |||||| || ||||||||| |||||||||||||||||||| |||||||||    
T  12606644 gagggaaaataaggagtgattagggcaacactgccagcacatcaagtctggcttttatagtaaaggata 12606712  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 33365992 - 33365924
Alignment:
Q  226 gagggaaaaacaggattgtttaggggaa-actgccagctcatcaagtctggcttttataataaaggata 293  Q
    ||||||||||||||| || |||||| || ||||||||||||||||||||||||||||||||||||||||    
T  33365992 gagggaaaaacaggagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggata 33365924  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 359 - 557
Target Start/End: Original strand, 29997562 - 29997762
Alignment:
Q  359 cttgcgccacaagcaattgaagctgaagaaagtgt-agaattagaattta-gttgtaactattttgcttaagtttagggaagttagttatgattgaatga 456  Q
    |||||| || |||||||||||||| |||| ||| | ||| |||||| | | ||| | |||| |||||| | ||||||| ||||||||||||||  | |||    
T  29997562 cttgcgacaaaagcaattgaagcttaagacagttttagacttagaaatcatgttatgactactttgctcatgtttaggaaagttagttatgatacagtga 29997661  T
Q  457 tataaggatcacaatagtttataatcatccttcactgaattgctataaatatatgtaattgcttttattgcaagttaaaatgaaataatggttcattgaa 556  Q
      | | ||||||| ||||||||  | |||  |||||||| | | |||| || |||||||||||| |||| ||||||||  ||||||||||||||||||||    
T  29997662 ggtgaagatcacagtagtttatgctgatctatcactgaaataccataagtacatgtaattgcttctattacaagttaatgtgaaataatggttcattgaa 29997761  T
Q  557 c 557  Q
    |    
T  29997762 c 29997762  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 226 - 292
Target Start/End: Complemental strand, 12870222 - 12870155
Alignment:
Q  226 gagggaaaaacaggattgtttaggggaa-actgccagctcatcaagtctggcttttataataaaggat 292  Q
    ||||||||||||| | || |||||| || |||||||||||||||||||||||||||||| ||||||||    
T  12870222 gagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttatagtaaaggat 12870155  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 43469642 - 43469680
Alignment:
Q  254 actgccagctcatcaagtctggcttttataataaaggat 292  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43469642 actgccagctcatcaagtctggcttttataataaaggat 43469680  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 478
Target Start/End: Original strand, 4368904 - 4368973
Alignment:
Q  409 ttgtaactattttgcttaagtttagggaagttagttatgattgaatgatataaggatcacaatagtttat 478  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||| ||| || | ||||||||||| ||||    
T  4368904 ttgtaactactttgcttatgtttatggaagttagttatgattgagtgagatgaagatcacaatagcttat 4368973  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 622 - 673
Target Start/End: Complemental strand, 31037200 - 31037149
Alignment:
Q  622 actcaatatggtatcatgagccttttaatatgaaagtacttcttctgcaagc 673  Q
    ||||||||||||||||||| |||||| || ||||||| ||||||||||||||    
T  31037200 actcaatatggtatcatgatccttttgatctgaaagtgcttcttctgcaagc 31037149  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 10646145 - 10646183
Alignment:
Q  254 actgccagctcatcaagtctggcttttataataaaggat 292  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  10646145 actgccagctcatcaagtctggcttttagaataaaggat 10646183  T

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