View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12155_low_5 (Length: 384)

Name: NF12155_low_5
Description: NF12155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12155_low_5
NF12155_low_5
[»] chr7 (14 HSPs)
chr7 (1-369)||(841829-842197)
chr7 (1-369)||(849005-849373)
chr7 (1-369)||(1207009-1207377)
chr7 (2-246)||(16290694-16290938)
chr7 (1-246)||(801827-802072)
chr7 (1-117)||(23883312-23883428)
chr7 (1-117)||(42634783-42634899)
chr7 (1-117)||(8814080-8814196)
chr7 (161-246)||(30373349-30373434)
chr7 (170-246)||(9466269-9466345)
chr7 (1-123)||(9466100-9466222)
chr7 (1-123)||(30373472-30373594)
chr7 (161-246)||(16396852-16396937)
chr7 (1-123)||(16396975-16397097)
[»] chr5 (20 HSPs)
chr5 (1-317)||(29896762-29897078)
chr5 (2-246)||(34465201-34465445)
chr5 (1-146)||(22955460-22955605)
chr5 (1-117)||(1801762-1801878)
chr5 (1-117)||(7258459-7258575)
chr5 (1-117)||(7790458-7790574)
chr5 (1-117)||(12391950-12392066)
chr5 (1-123)||(36379496-36379618)
chr5 (1-123)||(37004168-37004290)
chr5 (1-246)||(5443607-5443852)
chr5 (161-246)||(11947806-11947891)
chr5 (161-246)||(15788124-15788209)
chr5 (161-246)||(31516985-31517070)
chr5 (1-123)||(17953617-17953739)
chr5 (161-246)||(36379373-36379458)
chr5 (161-246)||(37004045-37004130)
chr5 (170-246)||(17953786-17953862)
chr5 (1-123)||(11947929-11948051)
chr5 (1-123)||(15788247-15788369)
chr5 (1-123)||(31516825-31516947)
[»] chr1 (4 HSPs)
chr1 (1-317)||(2339796-2340112)
chr1 (1-117)||(6201487-6201603)
chr1 (161-246)||(5632524-5632609)
chr1 (1-123)||(5632647-5632769)
[»] chr6 (11 HSPs)
chr6 (2-289)||(2412038-2412325)
chr6 (1-146)||(20054609-20054754)
chr6 (1-117)||(16821526-16821642)
chr6 (1-117)||(20044396-20044512)
chr6 (1-117)||(24147211-24147327)
chr6 (1-117)||(27513589-27513705)
chr6 (1-117)||(619668-619784)
chr6 (26-289)||(2410265-2410529)
chr6 (170-246)||(9139800-9139876)
chr6 (1-123)||(9139923-9140045)
chr6 (201-294)||(20054515-20054608)
[»] chr3 (13 HSPs)
chr3 (2-246)||(41436819-41437063)
chr3 (2-246)||(20439654-20439898)
chr3 (1-284)||(15915055-15915338)
chr3 (1-117)||(6198043-6198159)
chr3 (1-117)||(8807959-8808075)
chr3 (1-117)||(15533637-15533753)
chr3 (1-117)||(21611389-21611505)
chr3 (1-117)||(46397011-46397127)
chr3 (1-245)||(15596422-15596666)
chr3 (7-117)||(8620090-8620200)
chr3 (161-246)||(5954354-5954439)
chr3 (161-246)||(46376951-46377036)
chr3 (1-123)||(46376791-46376913)
[»] chr2 (4 HSPs)
chr2 (1-189)||(21763993-21764181)
chr2 (1-246)||(22945911-22946156)
chr2 (161-246)||(12380336-12380421)
chr2 (1-123)||(12380176-12380298)
[»] scaffold0387 (1 HSPs)
scaffold0387 (1-232)||(5723-5954)
[»] scaffold0019 (2 HSPs)
scaffold0019 (1-146)||(17294-17439)
scaffold0019 (204-294)||(17200-17290)
[»] scaffold0183 (2 HSPs)
scaffold0183 (1-146)||(31872-32017)
scaffold0183 (201-313)||(32018-32130)
[»] chr4 (7 HSPs)
chr4 (1-117)||(15575638-15575754)
chr4 (1-126)||(16724575-16724700)
chr4 (1-117)||(14920992-14921108)
chr4 (1-117)||(18039903-18040019)
chr4 (1-117)||(15571510-15571626)
chr4 (5-117)||(15899271-15899383)
chr4 (1-117)||(22707593-22707709)
[»] scaffold1197 (1 HSPs)
scaffold1197 (1-120)||(2168-2287)
[»] scaffold0104 (1 HSPs)
scaffold0104 (1-146)||(28843-28988)
[»] scaffold0551 (2 HSPs)
scaffold0551 (1-117)||(9879-9995)
scaffold0551 (1-60)||(3822-3881)
[»] scaffold0435 (1 HSPs)
scaffold0435 (1-117)||(12431-12547)
[»] scaffold0094 (1 HSPs)
scaffold0094 (1-245)||(38771-39015)
[»] scaffold0029 (3 HSPs)
scaffold0029 (1-126)||(74811-74936)
scaffold0029 (170-246)||(25848-25924)
scaffold0029 (1-123)||(25679-25801)
[»] scaffold0441 (1 HSPs)
scaffold0441 (1-117)||(10679-10795)
[»] chr8 (1 HSPs)
chr8 (1-117)||(21479703-21479819)
[»] scaffold0002 (2 HSPs)
scaffold0002 (161-246)||(302582-302667)
scaffold0002 (1-123)||(302422-302544)
[»] scaffold0595 (1 HSPs)
scaffold0595 (179-246)||(9675-9742)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 841829 - 842197
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||||||||||||||||| |    
T  841829 cttcttaaaaactctcaatcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatgggtgtacagttggaagaa 841928  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    ||||| ||||||||||| |||||||||||||||||||| |  ||||||||       |||||||| ||||||||||||||||||| || | |||||||||    
T  841929 ggagtccgagaaggacgattagttaaagatggagcttccgacagtggagccaagaaatttgggaataacttcccaagaaagaaagcaccagaggtcggta 842028  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaacaaccaggttatcagcc 300  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  842029 tggtggcccatgggaggcctcagcaaaattatacagcctatcaacatgttgctaccattacacccgctaccaatgctattgaacaaccgggttatcagcc 842128  T
Q  301 gcagttccaacagtatcttgagcagccatatcagcagcaaccgtatcagcaacagcaacctcgaccaca 369  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  842129 gcagttccaacagtatcctcagcagccatatcagcagcaaccgtatcagcaacaacaacctcgaccaca 842197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 849005 - 849373
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||||||||||||||||| |    
T  849005 cttcttaaaaactctcaatcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatgggtgtacagttggaagaa 849104  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    ||||| ||||||||||| |||||||||||||||||||| |  ||||||||       |||||||| ||||||||||||||||||| || | |||||||||    
T  849105 ggagtccgagaaggacgattagttaaagatggagcttccgacagtggagccaagaaatttgggaataacttcccaagaaagaaagcaccagaggtcggta 849204  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaacaaccaggttatcagcc 300  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  849205 tggtggcccatgggaggcctcagcaaaattatacagcctatcaacatgttgctaccattacacccgctaccaatgctattgaacaaccgggttatcagcc 849304  T
Q  301 gcagttccaacagtatcttgagcagccatatcagcagcaaccgtatcagcaacagcaacctcgaccaca 369  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  849305 gcagttccaacagtatcctcagcagccatatcagcagcaaccgtatcagcaacaacaacctcgaccaca 849373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 1207009 - 1207377
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||||||||||||||||| |    
T  1207009 cttcttaaaaactctcaatcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatgggtgtacagttggaagaa 1207108  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    ||||| ||||||||||| |||||||||||||||||||| |  ||||||||       |||||||| ||||||||||||||||||| || | |||||||||    
T  1207109 ggagtccgagaaggacgattagttaaagatggagcttccgacagtggagccaagaaatttgggaataacttcccaagaaagaaagcaccagaggtcggta 1207208  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaacaaccaggttatcagcc 300  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  1207209 tggtggcccatgggaggcctcagcaaaattatacagcctatcaacatgttgctaccattacacccgctaccaatgctattgaacaaccgggttatcagcc 1207308  T
Q  301 gcagttccaacagtatcttgagcagccatatcagcagcaaccgtatcagcaacagcaacctcgaccaca 369  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1207309 gcagttccaacagtatcctcagcagccatatcagcagcaaccgtatcagcaacaacaacctcgaccaca 1207377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 16290938 - 16290694
Alignment:
Q  2 ttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaaggag 101  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |  || ||||||||||||||||| |||||||||| ||    
T  16290938 ttcttaaaaactctcagtcagttctactacgagaagatggtcggaagtacgcccaagaacttcgctgaaatggtcggcatgggtgtgcagttggaagaag 16290839  T
Q  102 gagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggtat 201  Q
    |||| ||||||||||| ||||| ||||||||||||||| | |||||| |       | ||| ||| || |||| ||||||||||||||  ||||  ||||    
T  16290838 gagtccgagaaggacgtttagtaaaagatggagcttctaccagtggaaccaagaaatatggcaaccacatcccgagaaagaaagaacatgaggttagtat 16290739  T
Q  202 ggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    ||||||||| || |||||||| |||| ||||||| ||||||||||    
T  16290738 ggtggcccaaggaaggcctcagcaaacttatccaacctatcaaca 16290694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 802072 - 801827
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||  || ||||| ||||||||||| || ||||||| |    
T  802072 cttcttaaaaactctcagtcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgaaatggttggcatgggtgtgcaattggaagaa 801973  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    ||||| ||||||||| | ||||| ||| ||||||||||| | ||| || |       | ||| ||| || |||| ||||||||||||||  ||||   ||    
T  801972 ggagtccgagaaggatgtttagtaaaaaatggagcttctaccagttgaaccaagaaatatggcaaccacatcccgagaaagaaagaacatgaggttatta 801873  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||||||| || ||| |||| |||| ||||||| ||||||||||    
T  801872 tggtggcccaaggaaggtctcagcaaacttatccaacctatcaaca 801827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 23883428 - 23883312
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||  |||||||| || ||||||||||||||||||| |    
T  23883428 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagtacgcccaagaattttgctgagatggttggtatgggtgtacagttggaagaa 23883329  T
Q  101 ggagtacgagaaggacg 117  Q
    || || |||||||||||    
T  23883328 ggggtccgagaaggacg 23883312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 42634899 - 42634783
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  42634899 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 42634800  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  42634799 ggagtccgagaaggacg 42634783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 8814080 - 8814196
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  8814080 cttcttaaaaactctcaatcagttctgctacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 8814179  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  8814180 ggagtccgagaaggacg 8814196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 30373434 - 30373349
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  30373434 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctatcaaca 30373349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 9466269 - 9466345
Alignment:
Q  170 ttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    ||||| || |||||||| ||| | |||||||||||| | ||||| |||||||| |||| ||||||||||||||||||    
T  9466269 ttcccgaggaagaaagagcaagaagtcggtatggtgactcatggaaggcctcaacaaacttatccagcctatcaaca 9466345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 9466100 - 9466222
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||||| ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  9466100 cttcctaaaaactctgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 9466199  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  9466200 ggagtccgagaaggacgcttagt 9466222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 30373594 - 30373472
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||| | ||||| || || ||| | ||||||||||||||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  30373594 cttcctaaaaactttgaatcatttttattacaaaaagatggtcggaagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 30373495  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  30373494 ggagtccgagaaggacgcttagt 30373472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 16396937 - 16396852
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | ||| |||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  16396937 gggaaccatttcccgaggaagaaagaacaagaagtcagtatggtgactcatggagggcctcaacaaacttatccagcctatcaaca 16396852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 16397097 - 16396975
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||| | ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  16397097 cttcctaaaaactttgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 16396998  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  16396997 ggagtccgagaaggacgcttagt 16396975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 29896762 - 29897078
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||| ||||||||||||| |    
T  29896762 cttcttaaaaactctcaatcatttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatgggcgtacagttggaagaa 29896861  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    ||||| ||||||||||| |||||||||||||||||||| |  ||||||||       |||||||||||||||||||||||||||| || | |||||||||    
T  29896862 ggagtccgagaaggacgattagttaaagatggagcttccgacagtggagccaagaaatttgggaacaacttcccaagaaagaaagcaccagaggtcggta 29896961  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaacaaccaggttatcagcc 300  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |||||||||||    
T  29896962 tggtggcccatgggaggcctcagcaaaattatccagcctatcagcatgttgctgccattacacccgctaccaatgctattcaacaaccgggttatcagcc 29897061  T
Q  301 gcagttccaacagtatc 317  Q
    |||||||||||||||||    
T  29897062 gcagttccaacagtatc 29897078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 34465201 - 34465445
Alignment:
Q  2 ttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaaggag 101  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||  || ||||| ||||||||||| |||||||||| ||    
T  34465201 ttcttaaaaactctcagtcagttctactacgagaagatggtcggaagtacgcccaaaaactttgctgaaatggttggcatgggtgtgcagttggaagaag 34465300  T
Q  102 gagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggtat 201  Q
    |||| ||||||||||| ||||| |||||||||| |||| | |||||| |       | ||| ||| || |||| ||||||||||||||  ||||  ||||    
T  34465301 gagtccgagaaggacgtttagtaaaagatggagtttctaccagtggaaccaagaaatatggcaaccacatcccgagaaagaaagaacatgaggttagtat 34465400  T
Q  202 ggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    ||||||||| || |||||||| |||| ||||||| ||||||||||    
T  34465401 ggtggcccaaggaaggcctcagcaaacttatccaacctatcaaca 34465445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22955605 - 22955460
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||| ||||||| |    
T  22955605 cttcttaaaaactcttagtcagttctactacgagaagatggtcggaagtacgcccaagaactttgcagaaatggtcggtatgggtgtacaattggaagaa 22955506  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtg 146  Q
    ||||| ||||||||||| ||||| ||| ||||| ||||||| ||||    
T  22955505 ggagtccgagaaggacgtttagtcaaaaatggaacttctgccagtg 22955460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 1801762 - 1801878
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  1801762 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 1801861  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  1801862 ggagtccgagaaggacg 1801878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 7258575 - 7258459
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  7258575 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 7258476  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  7258475 ggagtccgagaaggacg 7258459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 7790458 - 7790574
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  7790458 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 7790557  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  7790558 ggagtccgagaaggacg 7790574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 12392066 - 12391950
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||  |||||||| || ||||||||||||||||||| |    
T  12392066 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagtacgcccaagaattttgctgagatggttggtatgggtgtacagttggaagaa 12391967  T
Q  101 ggagtacgagaaggacg 117  Q
    || || |||||||||||    
T  12391966 ggggtccgagaaggacg 12391950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 36379618 - 36379496
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||||| ||||| || |||||| | ||||||||||| ||||  || |||| ||| | ||||||||| || ||||| |||||||| |||| |    
T  36379618 cttcctaaaaactctaaatcatttttactacaaaaagatggtcgggagtacaccaaagagcttcgcagagatggttggtatgggagtacagttagaagaa 36379519  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  36379518 ggagtccgagaaggacgcttagt 36379496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 37004290 - 37004168
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||||| ||||| || |||||| | ||||||||||| ||||  || |||| ||| | ||||||||| || ||||| |||||||| |||| |    
T  37004290 cttcctaaaaactctaaatcatttttactacaaaaagatggtcgggagtacaccaaagagcttcgcagagatggttggtatgggagtacagttagaagaa 37004191  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  37004190 ggagtccgagaaggacgcttagt 37004168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 5443852 - 5443607
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||||| ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  5443852 cttcctaaaaactctgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 5443753  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    ||||| ||||||||||| ||||| ||  ||| | || |||| |||||  |          |||||| | ||||| || |||||||| ||| | |||||||    
T  5443752 ggagtccgagaaggacgcttagtaaagaatgcaactcctgccagtgggaccaagaagaccgggaaccatttcccgaggaagaaagagcaagaagtcggta 5443653  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    ||||| | ||||| |||||||| |||| ||||||||||||||||||    
T  5443652 tggtgactcatggaaggcctcaacaaacttatccagcctatcaaca 5443607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 11947891 - 11947806
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  11947891 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgacacatggagggcctcaacaaacttatccagcctatcaaca 11947806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 15788209 - 15788124
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  15788209 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctatcaaca 15788124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 31516985 - 31517070
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  31516985 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctatcaaca 31517070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 17953617 - 17953739
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||| | ||||| || || ||| | ||||||||||| ||||  || |||| ||| | ||||||||| || ||||| |||||||| |||| |    
T  17953617 cttcctaaaaactttgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcagagatggttggtatgggagtacagttagaagaa 17953716  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  17953717 ggagtccgagaaggacgcttagt 17953739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 36379458 - 36379373
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| |||||||||||| |||||    
T  36379458 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctaccaaca 36379373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 37004130 - 37004045
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| |||||||||||| |||||    
T  37004130 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctaccaaca 37004045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 17953786 - 17953862
Alignment:
Q  170 ttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    ||||| || |||||||| ||| | |||||||||||| | ||||| | |||||| |||| ||||||||||||||||||    
T  17953786 ttcccgaggaagaaagagcaagaagtcggtatggtgactcatggaatgcctcaacaaacttatccagcctatcaaca 17953862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 11948051 - 11947929
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||| | ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  11948051 cttcctaaaaactttgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 11947952  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  11947951 ggagtccgagaaggacgcttagt 11947929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 15788369 - 15788247
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||| | ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  15788369 cttcctaaaaactttgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 15788270  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  15788269 ggagtccgagaaggacgcttagt 15788247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 31516825 - 31516947
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||| | ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  31516825 cttcctaaaaactttgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 31516924  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  31516925 ggagtccgagaaggacgcttagt 31516947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 2340112 - 2339796
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||| ||||||||||||| |    
T  2340112 cttcttaaaaactctcaatcatttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatgggcgtacagttggaagaa 2340013  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    ||||| ||||||||||| |||||||||||||||||||| |  ||||||||       |||||||||||||||||||||||||||| ||   |||||||||    
T  2340012 ggagtccgagaaggacgattagttaaagatggagcttccgacagtggagctaagaaatttgggaacaacttcccaagaaagaaagcaccggaggtcggta 2339913  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaacaaccaggttatcagcc 300  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||||    
T  2339912 tggtggcccatgggaggcctcagcaaaattatccagcttatcaacatgttgctgccattacgcccgctaccaatgctattcaacaaccgggttatcagcc 2339813  T
Q  301 gcagttccaacagtatc 317  Q
    |||||||||||||||||    
T  2339812 gcagttccaacagtatc 2339796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 6201603 - 6201487
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || || || ||||| ||||||| |    
T  6201603 cttcttaaaaacccttaatcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtataggcgtacaattggaagaa 6201504  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  6201503 ggagtccgagaaggacg 6201487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 5632609 - 5632524
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  5632609 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctatcaaca 5632524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5632769 - 5632647
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||||| ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  || ||||| || ||||| |||||||| |||| |    
T  5632769 cttcctaaaaactctaaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggaaatggttggtatgggagtacagttagaagaa 5632670  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  5632669 ggagtccgagaaggacgcttagt 5632647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 2 - 289
Target Start/End: Original strand, 2412038 - 2412325
Alignment:
Q  2 ttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaaggag 101  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||||||||||||||||| ||    
T  2412038 ttcttaaaaactctcaatcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatgggtgtacagttggaagaag 2412137  T
Q  102 gagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggtat 201  Q
    |||| ||||||||||| ||||| || | |||| ||||| |  ||||| |       | ||||||| | ||||||||||| ||||||||| | ||  ||||    
T  2412138 gagtgcgagaaggacgtttagtaaagggtggaacttctacctgtggaaccaagaaatatgggaaccatttcccaagaaaaaaagaacaagaagttagtat 2412237  T
Q  202 ggtggcccatgggaggcctcatcaaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaacaacca 289  Q
    ||| |||||||||||||||||||| | ||||||| | |||||||| ||| || |||| ||||  ||| |||||| |||||||| ||||    
T  2412238 ggtagcccatgggaggcctcatcagacttatccaacttatcaacacgttgctgccatcacacttgctgccaatgttattcaaccacca 2412325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 20054754 - 20054609
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||||||||| |    
T  20054754 cttcttaaaaactctcaatcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggtcggtatgggtgtacagttggaagaa 20054655  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtg 146  Q
    ||||| ||||||||||| ||||||| ||||| | ||||||| ||||    
T  20054654 ggagtccgagaaggacgtttagttagagatgaaacttctgccagtg 20054609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 16821642 - 16821526
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||  |||||||| || ||||||||||||||||||| |    
T  16821642 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagtacgcccaagaattttgctgagatggttggtatgggtgtacagttggaagaa 16821543  T
Q  101 ggagtacgagaaggacg 117  Q
    || || |||||||||||    
T  16821542 ggggtccgagaaggacg 16821526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 20044512 - 20044396
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  20044512 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 20044413  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  20044412 ggagtccgagaaggacg 20044396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 24147327 - 24147211
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  24147327 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 24147228  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  24147227 ggagtccgagaaggacg 24147211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 27513589 - 27513705
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||  |||||||||||||  |||||||| || ||||| ||||||||||||| |    
T  27513589 cttcttaaaaactcttaatcagttctactacgagaagatggtcggaagtacacccaagaactttgctgagatggttggtatgggcgtacagttggaagaa 27513688  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  27513689 ggagtccgagaaggacg 27513705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 619784 - 619668
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  619784 cttcttaaaaactctcaatcagttctgctacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 619685  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  619684 ggagtccgagaaggacg 619668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 289
Target Start/End: Complemental strand, 2410529 - 2410265
Alignment:
Q  26 tactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaaggaggagtacgagaaggacggttagtta 125  Q
    ||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||||||||||||||||| |||| |  || ||||||| ||||| |    
T  2410529 tactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatgggtgtacagttggaagaaggaatctgaaaaggacgtttagtaa 2410430  T
Q  126 aagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaag-aaagaaagaacaataggtcggtatggtggcccatgggaggcctcatc 224  Q
    | |||||||||||| | |||||| |       | ||||||| ||||| | || ||| ||||||||| | ||  ||||||| ||||||||||||||| | |    
T  2410429 aggatggagcttctaccagtggaaccaagaaatatgggaaccacttctcgagaaaaaaaagaacaagaagttagtatggtagcccatgggaggccttagc 2410330  T
Q  225 aaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaacaacca 289  Q
    | | ||||||| | |||||||| ||| || | || ||||| ||| |||| | |||||||| ||||    
T  2410329 agacttatccaacttatcaacacgttgctgctatcacacctgctgccaaagttattcaaccacca 2410265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 9139876 - 9139800
Alignment:
Q  170 ttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    ||||| || |||||||| ||| | |||||||||||| | ||||| | |||||| |||| ||||||||||||||||||    
T  9139876 ttcccgaggaagaaagagcaagaagtcggtatggtgactcatggaatgcctcaacaaacttatccagcctatcaaca 9139800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 9140045 - 9139923
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||| | ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  9140045 cttcctaaaaactttgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 9139946  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  9139945 ggagtccgagaaggacgcttagt 9139923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 20054608 - 20054515
Alignment:
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaacaaccaggtta 294  Q
    ||||||||||||| |||||||| ||||| ||| | ||  ||||||||||| ||||  | ||||||||| ||| ||| |||||||| || |||||    
T  20054608 tggtggcccatggaaggcctcaacaaaaatattcggctcatcaacatgttgctacagtcacacccgctgccagtgccattcaacagccgggtta 20054515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 41436819 - 41437063
Alignment:
Q  2 ttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaaggag 101  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||  || ||||| ||||||||||| |||||||||| ||    
T  41436819 ttcttaaaaactctcagtcagttctactacgagaagatggtcggaagtacgcccaaaaactttgctgaaatggttggcatgggtgtgcagttggaagaag 41436918  T
Q  102 gagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggtat 201  Q
    |||| ||||||||||| ||||| |||||||||| |||| | |||||| |       | ||| ||| || |||| ||||||||||||||  ||||| ||||    
T  41436919 gagtccgagaaggacgtttagtaaaagatggagtttctaccagtggaaccaagaaatatggcaaccacatcccgagaaagaaagaacatgaggtcagtat 41437018  T
Q  202 ggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    ||||||||| || |||||||| |||| ||||||| ||||||||||    
T  41437019 ggtggcccaaggaaggcctcagcaaacttatccaacctatcaaca 41437063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 20439654 - 20439898
Alignment:
Q  2 ttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaaggag 101  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||  || ||||| ||||||||||| |||||||||| ||    
T  20439654 ttcttaaaaactctcagtcagttctactacgagaagatggtcggaagtacgcccaaaaactttgctgaaatggttggcatgggtgtgcagttggaagaag 20439753  T
Q  102 gagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggtat 201  Q
    |||| ||||||||||| ||||| |||||||||| |||| | |||||| |       | ||| ||| || |||| ||||||||||||||  ||||  ||||    
T  20439754 gagtccgagaaggacgtttagtaaaagatggagtttctaccagtggaaccaagaaatatggcaaccacatcccgagaaagaaagaacatgaggttagtat 20439853  T
Q  202 ggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    ||||||||| || |||||||| |||| ||||||| ||||||||||    
T  20439854 ggtggcccaaggaaggcctcagcaaacttatccaacctatcaaca 20439898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 15915055 - 15915338
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||    ||||||||||| | |||||| ||||||| ||||||||||||||  |||||||| || |||||||| |||||||||| |    
T  15915055 cttcttaaaaactctcaactctttctactacgaaaggatggttggaagtacgcccaagaactttgctgagatggttggtatgggtgtgcagttggaagaa 15915154  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    || || ||||||||||| ||||| ||||||| | ||||||| |||||| |       || ||||   || |||||||||||||||||||| | ||| |||    
T  15915155 ggggtccgagaaggacgtttagtaaaagatgcaacttctgccagtggaaccaagaaattcgggagtcacctcccaagaaagaaagaacaagaagtcagta 15915254  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaac 284  Q
    ||||||| ||||| || ||||| |||| |||||||  ||||||||  ||| || | || |||||||| ||| || |||||||||    
T  15915255 tggtggctcatggaagacctcaacaaacttatccaatctatcaacccgttgctgctatcacacccgccacccatactattcaac 15915338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 6198043 - 6198159
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  6198043 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 6198142  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  6198143 ggagtccgagaaggacg 6198159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 8807959 - 8808075
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||  |||||||| || ||||||||||||||||||| |    
T  8807959 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagtacgcccaagaattttgctgagatggttggtatgggtgtacagttggaagaa 8808058  T
Q  101 ggagtacgagaaggacg 117  Q
    || || |||||||||||    
T  8808059 ggggtccgagaaggacg 8808075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 15533753 - 15533637
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  15533753 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 15533654  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  15533653 ggagtccgagaaggacg 15533637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 21611389 - 21611505
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||  |||||||| || ||||||||||||||||||| |    
T  21611389 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagtacgcccaagaattttgctgagatggttggtatgggtgtacagttggaagaa 21611488  T
Q  101 ggagtacgagaaggacg 117  Q
    || || |||||||||||    
T  21611489 ggggtccgagaaggacg 21611505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 46397127 - 46397011
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  46397127 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 46397028  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  46397027 ggagtccgagaaggacg 46397011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 15596666 - 15596422
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||    ||||||||||| | |||||| ||||||| ||||||||||||||  |||||||| || |||||||| |||||||||| |    
T  15596666 cttcttaaaaactctcaactctttctactacgaaaggatggttggaagtacgcccaagaactttgctgagatggttggtatgggtgtgcagttggaagaa 15596567  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    || || ||| ||||||| ||||| ||||||| | ||||||| |||||| |       || ||||   || |||||||||||||||||||| | |||||||    
T  15596566 ggggtccgacaaggacgtttagtaaaagatgcaacttctgccagtggaaccaagaaattcgggagtcacctcccaagaaagaaagaacaagaagtcggta 15596467  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaac 245  Q
    ||||||| ||||| ||  |||| |||| |||||||  ||||||||    
T  15596466 tggtggctcatggaagatctcaacaaacttatccaatctatcaac 15596422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 8620090 - 8620200
Alignment:
Q  7 aaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaaggaggagta 106  Q
    ||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| ||||||     
T  8620090 aaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaaggagtc 8620189  T
Q  107 cgagaaggacg 117  Q
    |||||||||||    
T  8620190 cgagaaggacg 8620200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 5954439 - 5954354
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  5954439 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctatcaaca 5954354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 46376951 - 46377036
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  46376951 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctatcaaca 46377036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 46376791 - 46376913
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||||| ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  46376791 cttcctaaaaactctaaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 46376890  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  46376891 ggagtccgagaaggacgcttagt 46376913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 9e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 21764181 - 21763993
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||||||| |  |||||||| || |||||||| |||||||||| |    
T  21764181 cttcttaaaaactcttagtcagttctactacgagaagatggtcggaagtacgcccaagaacttcgctgagatggttggtatgggtgtgcagttggaagaa 21764082  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaaca 189  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||| |       ||||||||| ||||||||||||||||||||||    
T  21764081 ggagtccgagaaggacgtttagtaaaagatggagcttctgctagtggaaccaagaaatttgggaaccacttcccaagaaagaaagaaca 21763993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 22945911 - 22946156
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||||| ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  22945911 cttcctaaaaactctgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 22946010  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    ||||| ||||||||||| ||||| ||  ||| | || |||| |||||  |          |||||| | ||||| || |||||||| ||| | |||||||    
T  22946011 ggagtccgagaaggacgcttagtaaagaatgcaactcctgccagtgggaccaagaagaccgggaaccatttcccgaggaagaaagagcaagaagtcggta 22946110  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    ||||| | ||||| |||||||| |||| ||||||||||||||||||    
T  22946111 tggtgactcatggaaggcctcaacaaacttatccagcctatcaaca 22946156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 12380336 - 12380421
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  12380336 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctatcaaca 12380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 12380176 - 12380298
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||| | ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  12380176 cttcctaaaaactttgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 12380275  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  12380276 ggagtccgagaaggacgcttagt 12380298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5954 - 5723
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||| |  |||||||| || ||||||||||||||||||| |    
T  5954 cttcttaaaaactctaaatcagttctactacgagaagatggtcggaagtacgcccaaaaacttcgctgagatggttggtatgggtgtacagttggaagaa 5855  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    ||||| ||||||||||| ||||| || |||| | ||||| | |||||| |       || |||||| || |||||||||||||||||||| ||||| |||    
T  5854 ggagtccgagaaggacgtttagtaaaggatgtaacttcttccagtggaaccaagaaattcgggaaccacctcccaagaaagaaagaacaagaggtcagta 5755  T
Q  201 tggtggcccatgggaggcctcatcaaaattat 232  Q
    ||||||||||||| || ||||| |||| ||||    
T  5754 tggtggcccatggaagacctcagcaaacttat 5723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 17439 - 17294
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||||||||||||||  |||| ||||||||||||||||||||||||| || |||||||||||||| ||| |||||||| ||||||||||||||||||| |    
T  17439 cttcttaaaaactcttgatcagttctactacgagaagatggtcggaaatacgcccaagaactttgcagaaatggtcggtatgggtgtacagttggaagaa 17340  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtg 146  Q
    ||||| ||||||||||| ||||| | ||||||| ||||||| ||||    
T  17339 ggagtccgagaaggacgtttagtcagagatggaacttctgccagtg 17294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 17290 - 17200
Alignment:
Q  204 tggcccatgggaggcctcatcaaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaacaaccaggtta 294  Q
    |||| |||||||||||||| ||||| ||| | || |||||||| ||| || |  | ||||||||||||||||| |||||||||||||||||    
T  17290 tggcgcatgggaggcctcaacaaaaatattcggcttatcaacacgttgctgcagtcacacccgctaccaatgccattcaacaaccaggtta 17200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 31872 - 32017
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||||| | ||||| ||||||||||||| |    
T  31872 cttcttaaaaactcttgatcaattctactacgagaggatggtcggaagtacgcccaagaactttgcagaaatggtcagtatgggcgtacagttggaagaa 31971  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtg 146  Q
    ||| | ||||||||||| ||||||| ||||||| ||||||| ||||    
T  31972 ggaatccgagaaggacgtttagttagagatggaacttctgccagtg 32017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 313
Target Start/End: Original strand, 32018 - 32130
Alignment:
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaacatgtttctaccattacacccgctaccaatgctattcaacaaccaggttatcagcc 300  Q
    ||||||||||||| |||||||| ||||| ||| | ||  ||||||| ||| || | || ||||||||| ||||||| |||||||| || |||||||||||    
T  32018 tggtggcccatggaaggcctcaacaaaaatattcggctcatcaacacgttgctgcaatcacacccgctgccaatgccattcaacagccgggttatcagcc 32117  T
Q  301 gcagttccaacag 313  Q
     ||  ||||||||    
T  32118 acaactccaacag 32130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 15575754 - 15575638
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||| ||||||||||||| |    
T  15575754 cttcttaaaaactctcaatcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatgggcgtacagttggaagaa 15575655  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  15575654 ggagtccgagaaggacg 15575638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 16724700 - 16724575
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||| ||||| ||||||| |    
T  16724700 cttcttaaaaactctcaatcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatgggcgtacaattggaagaa 16724601  T
Q  101 ggagtacgagaaggacggttagttaa 126  Q
    ||||| ||||||||||| || |||||    
T  16724600 ggagtccgagaaggacgattggttaa 16724575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 14920992 - 14921108
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||  |||||||| || ||||| ||||||||||||| |    
T  14920992 cttcttaaaaactctcaatcagttctactacgagaagatggtcggaagtgcacccaagaactttgctgagatggttggtatgggcgtacagttggaagaa 14921091  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  14921092 ggagtccgagaaggacg 14921108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 18039903 - 18040019
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||  |||||||||||||  |||||||| || ||||| ||||||||||||| |    
T  18039903 cttcttaaaaactcttaatcagttctactacgagaagatggtcggaagtacacccaagaactttgctgagatggttggtatgggcgtacagttggaagaa 18040002  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  18040003 ggagtccgagaaggacg 18040019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 15571626 - 15571510
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||   |||||||||||||  |||||||| || ||||| ||||||||||||| |    
T  15571626 cttcttaaaaactctcaatcagttctactacgagaagatggtctgaagttctcccaagaactttgctgagatggttggtatgggcgtacagttggaagaa 15571527  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  15571526 ggagtccgagaaggacg 15571510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 15899383 - 15899271
Alignment:
Q  5 ttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaaggaggag 104  Q
    |||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||  |||||||| || ||||| ||||||||||||| |||||    
T  15899383 ttaaaaactctcaatcagatctactacgagaagatggtcggaagtacacccaagaactttgctgagatggttggtatgggcgtacagttggaagaaggag 15899284  T
Q  105 tacgagaaggacg 117  Q
    | |||||||||||    
T  15899283 tccgagaaggacg 15899271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 22707593 - 22707709
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||  |||||||| || ||||||||||||||||||| |    
T  22707593 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagtacgcccaagaattttgctgagatggttggtatgggtgtacagttggaagaa 22707692  T
Q  101 ggagtacgagaaggacg 117  Q
    ||  | |||||||||||    
T  22707693 gggatccgagaaggacg 22707709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 2168 - 2287
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||  |||||||| || ||||| ||||||||||||| |    
T  2168 cttcttaaaaactctcaatcagttctactacgagaagatggtcggaagtacgccctagaactttgctgagatggttggtatgggcgtacagttggaagaa 2267  T
Q  101 ggagtacgagaaggacggtt 120  Q
    ||||| ||||||||||||||    
T  2268 ggagtccgagaaggacggtt 2287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 28988 - 28843
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||  ||||||||||||  |    
T  28988 cttcttaaaaaccctcaatcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatggacgtacagttggaaaaa 28889  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtg 146  Q
    ||||| ||||||||||| ||||||| |||| || ||||||| ||||    
T  28888 ggagtccgagaaggacgtttagttagagatagaacttctgccagtg 28843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9995 - 9879
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||  |||||||| || ||||| ||||||||||||| |    
T  9995 cttcttaaaaactctcaatcagttctactacgagaagatggtcagaagtacgcccaagaactttgctgagatggttggtatgggcgtacagttggaagaa 9896  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  9895 ggagtccgagaaggacg 9879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3881 - 3822
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaa 60  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  3881 cttcttaaaaactctcaatcagttctactacgagaagatggtcagaagtacgcccaagaa 3822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 12547 - 12431
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  12547 cttcttaaaaactcttaatcagttctactacgagaagatggtcggaagtacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 12448  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  12447 ggagtccgagaaggacg 12431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 39015 - 38771
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||    ||||||||||| | |||||| ||||||| ||||||||||||||  |||||||| || |||||||| |||||||||| |    
T  39015 cttcttaaaaactctcaactctttctactacgaaaggatggttggaagtacgcccaagaactttgctgagatggttggtatgggtgtgcagttggaagaa 38916  T
Q  101 ggagtacgagaaggacggttagttaaagatggagcttctgctagtggagcnnnnnnntttgggaacaacttcccaagaaagaaagaacaataggtcggta 200  Q
    || || ||||||||||| ||||| ||||||| | ||||||| |||||| |       || ||||   || |||||||||||||||||||| | ||| |||    
T  38915 ggggtccgagaaggacgtttagtaaaagatgcaacttctgccagtggaaccaagaaattcgggagtcacctcccaagaaagaaagaacaagaagtcagta 38816  T
Q  201 tggtggcccatgggaggcctcatcaaaattatccagcctatcaac 245  Q
    ||||||| ||||| || ||||| |||| |||||||  ||||||||    
T  38815 tggtggctcatggaagacctcaacaaacttatccaatctatcaac 38771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 74811 - 74936
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||  |||||||| || ||||| ||||| ||||||| |    
T  74811 cttcttaaaaactctcaatcagttctactacgagaagatggtcggcagtacgcccaagaactttgctgagatggttggtatgggcgtacaattggaagaa 74910  T
Q  101 ggagtacgagaaggacggttagttaa 126  Q
    ||||| ||||||||||| || |||||    
T  74911 ggagtccgagaaggacgattggttaa 74936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 25848 - 25924
Alignment:
Q  170 ttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    ||||| || |||||||| ||| | |||||||||||| | ||||| |||||||| |||| ||||||||||||||||||    
T  25848 ttcccgaggaagaaagagcaagaagtcggtatggtgactcatggaaggcctcaacaaacttatccagcctatcaaca 25924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 25679 - 25801
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||| | ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  25679 cttcctaaaaactttgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 25778  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  25779 ggagtccgagaaggacgcttagt 25801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 10679 - 10795
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||  |||||||| || ||||| ||||||||||||| |    
T  10679 cttcttaaaaactctcaatcagttctactacgagaagatggacggaagtacacccaagaactttgctgagatggttggtatgggcgtacagttggaagaa 10778  T
Q  101 ggagtacgagaaggacg 117  Q
    |||||||||||| ||||    
T  10779 ggagtacgagaaagacg 10795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 21479819 - 21479703
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  |||||||| || ||||||||||| ||||||| |    
T  21479819 cttcttaaaaactctcaatcagttctactacaagaagatggtcggaagcacgcccaagaactttgctgagatggttggtatgggtgtacaattggaagaa 21479720  T
Q  101 ggagtacgagaaggacg 117  Q
    ||||| |||||||||||    
T  21479719 ggagtccgagaaggacg 21479703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 302582 - 302667
Alignment:
Q  161 gggaacaacttcccaagaaagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||| | ||||| || |||||||||||| | |||||||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  302582 gggaaccatttcccgaggaagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctatcaaca 302667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 302422 - 302544
Alignment:
Q  1 cttcttaaaaactctcaatcaattctactacgagaagatggtcggaagtatgcccaagaactttggagagatggtcggcatgggtgtacagttggaagga 100  Q
    |||| |||||||| | ||||| || || ||| | ||||||||||| ||||  || |||| ||| |  |||||||| || ||||| |||||||| |||| |    
T  302422 cttcctaaaaactttgaatcatttttattacaaaaagatggtcgggagtacaccaaagagcttcgcggagatggttggtatgggagtacagttagaagaa 302521  T
Q  101 ggagtacgagaaggacggttagt 123  Q
    ||||| ||||||||||| |||||    
T  302522 ggagtccgagaaggacgcttagt 302544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 9675 - 9742
Alignment:
Q  179 aagaaagaacaataggtcggtatggtggcccatgggaggcctcatcaaaattatccagcctatcaaca 246  Q
    |||||||||||| | |||||||||||| | |||||  ||||||| |||| ||||||||||||||||||    
T  9675 aagaaagaacaagaagtcggtatggtgactcatggagggcctcaacaaacttatccagcctatcaaca 9742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University