View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12155_low_6 (Length: 368)
Name: NF12155_low_6
Description: NF12155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12155_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 5 - 357
Target Start/End: Original strand, 47074664 - 47075030
Alignment:
| Q |
5 |
attttattcagtgtgaggttaagcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgttg |
104 |
Q |
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| T |
47074664 |
attttattaagtgtgaggttaagcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgtgg |
47074763 |
T |
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| Q |
105 |
atcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcac |
204 |
Q |
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| T |
47074764 |
atcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcac |
47074863 |
T |
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| Q |
205 |
tattttgcat--------------ctagaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagtacatg |
290 |
Q |
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| T |
47074864 |
tattttgcatctataaagtatgaactagaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagtgcatg |
47074963 |
T |
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| Q |
291 |
atttccactgctattgaaatcaaaacacccaataagtaacggattatcctgcatagagaaagaaatt |
357 |
Q |
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| T |
47074964 |
atttccactgctattgaaatcaaaacactcaataagtaacggattatcctgcatagagaaagaaatt |
47075030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 72 - 205
Target Start/End: Original strand, 47056763 - 47056896
Alignment:
| Q |
72 |
caatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgctactgatttttg |
171 |
Q |
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| T |
47056763 |
caatgaacaccttctcttgtcctttgcgtttggatggcatgacaaaattcacaccttttctctcattgcatagcttttcaaggtctgctattgttttctg |
47056862 |
T |
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| Q |
172 |
cagtttactgttgccaacaaacattgatgtcact |
205 |
Q |
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| T |
47056863 |
cattttactgatggcaacaaactttgatgtcact |
47056896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 347
Target Start/End: Original strand, 47056945 - 47057031
Alignment:
| Q |
261 |
tataatttgacattaccctataagtacatgatttccactgctattgaaatcaaaacacccaataagtaacggattatcctgcataga |
347 |
Q |
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| T |
47056945 |
tataatttgacattacccgattagtacatgattgccgctgatattgaaatcaaaacactcgataactaatggagtatcctgcataga |
47057031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 18230731 - 18230368
Alignment:
| Q |
16 |
tgtgaggttaagcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgaca |
115 |
Q |
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| T |
18230731 |
tgtgacgttaagcagagattagacccaaaatataatttgactttgattgcagggatcaatgaacaccttctcttgtccattgcgtgtggatggcatgaca |
18230632 |
T |
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| Q |
116 |
aaatttgcgccttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcat- |
214 |
Q |
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| T |
18230631 |
aaatttgcgccttttttttcttggtatagcttttcaaggtctgctactgattttttcagtttactgtcggcaacaaactttgatgtcagtattttgcatc |
18230532 |
T |
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| Q |
215 |
-----------------ctagaaagtgtaaagcctaaagaagtttaggctaaac----aaaaagctatataatttgacattaccctataagtacatgatt |
293 |
Q |
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| T |
18230531 |
tatatatagtatatggactagaaagtgtaaagcctaaaaatgtttaggctaaacgaaaataaaacaatataatttgacattacccgataagtacatgatt |
18230432 |
T |
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| Q |
294 |
tccactgctattgaaatcaaaacacccaataagtaacggattatcctgcatagagaaagaaatt |
357 |
Q |
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|| ||||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||| |
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| T |
18230431 |
gccgctgctattgaaatcaaaacactcaataagcaatggagtatcctgcatagagaaagaaatt |
18230368 |
T |
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