View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12155_low_7 (Length: 366)
Name: NF12155_low_7
Description: NF12155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12155_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 29678978 - 29679211
Alignment:
| Q |
18 |
aatcctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtcaaaactctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29678978 |
aatcctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtcaaaactctt |
29679077 |
T |
|
| Q |
118 |
tatacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatcattgtcagcagaacc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29679078 |
tatacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatcattgtccgcagaacc |
29679177 |
T |
|
| Q |
218 |
ggattcaaacattcaaggtgggctagtttttctt |
251 |
Q |
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|||||||||||||||||||||| |||||| |||| |
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| T |
29679178 |
ggattcaaacattcaaggtgggttagtttctctt |
29679211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 29679353 - 29679411
Alignment:
| Q |
294 |
tgtgtgcttttatttttagttgtcaaacatttt-gagatattcgcactaatggtatctg |
351 |
Q |
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|||||| |||| |||||||| |||||||||||| ||||||| |||||||||||||||| |
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| T |
29679353 |
tgtgtgattttctttttagtcgtcaaacattttaaagatatttgcactaatggtatctg |
29679411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 26460195 - 26460428
Alignment:
| Q |
18 |
aatcctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtcaaaactctt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
26460195 |
aatcctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtccgaactatt |
26460294 |
T |
|
| Q |
118 |
tatacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatcattgtcagcagaacc |
217 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||| |
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| T |
26460295 |
tactcattttcctttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgagtctttgcccgcagaaca |
26460394 |
T |
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| Q |
218 |
ggattcaaacattcaaggtgggctagtttttctt |
251 |
Q |
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| T |
26460395 |
gtattcaaacattcaaggtgggttagtttctctt |
26460428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 27996824 - 27997009
Alignment:
| Q |
18 |
aatcctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtcaaaactctt |
117 |
Q |
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|||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27996824 |
aatcatgtgtttttctttttcagatgtgagcatggcctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtcagaactctt |
27996923 |
T |
|
| Q |
118 |
tatacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatca |
203 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
27996924 |
tattcattttcatttattccatcgatcatgcatatacttgagtcattgcttttagctttaaactttaaaaagatgcatttgaatca |
27997009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 27987845 - 27987660
Alignment:
| Q |
18 |
aatcctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtcaaaactctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| | |||| |
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| T |
27987845 |
aatcctgtgtttttctttttcagatgtgagtaagacctttgttgagttacctcctgaactttgctctataatcatgttactaatatcaatcagatatctt |
27987746 |
T |
|
| Q |
118 |
tatacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatca |
203 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
27987745 |
tattcattttcatttattccatcgatcatgcatagactttagtcattgcttttagctatgaactttaaaaagatgcatttgaatca |
27987660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 27987433 - 27987623
Alignment:
| Q |
19 |
atcctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtcaaaactcttt |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
27987433 |
atcctgtgtttttatttttcagatgtgagcaagacctttgttaacttaccttatgaactttgttctataatcatgtcaccaatatcagtcagaactcttt |
27987532 |
T |
|
| Q |
119 |
atacattttcatttattccatcgatcatgcatagacttgagtc---attgcttgtagctttgaactttaaaaagatgcatttgaatcattg |
206 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27987533 |
attcattttcatttattccatcgatcatgcatagacttgagtcattattgcttgtagctttgaactttaaaaagatacatttgaatcattg |
27987623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 27997231 - 27997044
Alignment:
| Q |
18 |
aatcctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtcaaaactctt |
117 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||| |
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| T |
27997231 |
aatcatgtgtttttctttgtcagatgtgagcaagacctttgtagagttaccttctgaactttgttctataatcatgtcatcaatatcagtcagaactctt |
27997132 |
T |
|
| Q |
118 |
tatacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatcattg |
206 |
Q |
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|
||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27997131 |
tattcattttca-ttattccatcgatcatgcatagactagagtcattgcttgtagctttgaactttaaaacgatgcatttgaatcattg |
27997044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 26460570 - 26460628
Alignment:
| Q |
294 |
tgtgtgcttttatttttagttgtcaaacatttt-gagatattcgcactaatggtatctg |
351 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||| ||||||| |||||||||||||||| |
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|
| T |
26460570 |
tgtgtgattttctttttagtcgtcaaacattttaaagatatttgcactaatggtatctg |
26460628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 11490461 - 11490231
Alignment:
| Q |
18 |
aatcctgtgtttttctttttcagatgtgagcaagacctttgttgagttacctcctgaactttgctctataatcatgtcaccaatatcagtcaaaactctt |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || || | | || ||| |
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|
| T |
11490461 |
aatcccgtgtttttctttttcagatgtgagcaagacctttgttgaattacctcctgaactctgctctataatcatgtcaccagtaccacttagcacactt |
11490362 |
T |
|
| Q |
118 |
tatacattttcatttattccatcgatcatgcatagacttgagtcattgcttgtagctttgaactttaaaaagatgcatttgaatcattgtcagcagaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| |||||||||| || |||| | || ||| |
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|
| T |
11490361 |
tatacattttcatttattccatcgatcatgcatagacttgagtctttgcttggtgcttataactttaaaaggatgcatttggattattgcccacaaaaca |
11490262 |
T |
|
| Q |
218 |
ggattcaaacattcaaggtgggctagttttt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
11490261 |
agattcaaacattcaaggtgggctagttttt |
11490231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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