View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12156_high_4 (Length: 217)
Name: NF12156_high_4
Description: NF12156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12156_high_4 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0625 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 13225917 - 13225719
Alignment:
| Q |
19 |
gttcttttcttacgcgtattgaatagaacactgatccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaat |
118 |
Q |
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| T |
13225917 |
gttcttttcttacgcgtattgaatagaacactgatccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaat |
13225818 |
T |
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| Q |
119 |
ccatagttaatcctatttcgtataggagcagttgacaattgaatccaaatcccattttgtccattattttcatatgcgtaagagtgtgaaaggaaggcc |
217 |
Q |
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| T |
13225817 |
ccatagttaatcctatttcggataggagcagttgacaattgaatccaaatcccattttgtccattattttcatatgcgtaagagtgtgaaaagaaggcc |
13225719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 8939291 - 8939438
Alignment:
| Q |
19 |
gttcttttcttacgcgtattgaatagaacactgatccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaat |
118 |
Q |
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|||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||| |
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| T |
8939291 |
gttcttttcttatgcgtattgaataaaacgttgagccaaatcttgttcatagaaaaccgtctttatatagat-gggaaaatcatgtg---ttattcaaat |
8939386 |
T |
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| Q |
119 |
ccatagttaatcctatttcgtataggagcagttgacaattgaatccaaatcc |
170 |
Q |
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| || | |||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
8939387 |
caatgctcaatcctattttcgataggagacgttgaaaattgaatccaaatcc |
8939438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 18991934 - 18991740
Alignment:
| Q |
19 |
gttcttttcttacgcgtattgaatagaacactgatccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaat |
118 |
Q |
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| T |
18991934 |
gttctttccttacgcgtattgtatagaacactgatccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaat |
18991835 |
T |
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| Q |
119 |
ccatagttaatcctatttcgtataggagcagttgacaattgaatccaaatcccattttgtccattattttcatatgcgtaagagtgtgaaaggaag |
214 |
Q |
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| T |
18991834 |
ccatag-taatcctatatcagatagaagcagttgacaattgaatccaaatcccattttgtccattattttcatatgcgtaagagtgtgaaaagaag |
18991740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 18960027 - 18959833
Alignment:
| Q |
19 |
gttcttttcttacgcgtattgaatagaacactgatccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaat |
118 |
Q |
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| T |
18960027 |
gttcttttcttacgcgtattgtatagaacactgatccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaat |
18959928 |
T |
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| Q |
119 |
ccatagttaatcctatttcgtataggagcagttgacaattgaatccaaatcccattttgtccattattttcatatgcgtaagagtgtgaaaggaag |
214 |
Q |
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|||| | |||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
18959927 |
ccat-ggtaatcctatttcagatagaaggagttgacaattgaatccaaatcccattttgtccattattttcatatgcgtaagattgtgaaaagaag |
18959833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 3162483 - 3162554
Alignment:
| Q |
146 |
gcagttgacaattgaatccaaatcccattttgtccattattttcatatgcgtaagagtgtgaaaggaaggcc |
217 |
Q |
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| T |
3162483 |
gcagttgacaattgaatccaaatcccattttgtccattattttcatatgcgtaagagtgtgaaaagaaggcc |
3162554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 1540790 - 1540634
Alignment:
| Q |
60 |
cttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaatccatagttaatcctatttcgtataggagcagttgacaattg |
159 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||||||| |
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| T |
1540790 |
cttgttcatagaaaattgtctttagttagatcgggaaaatcatgtgctattgttcaaatccacagtcaatcctatttgggataggagcagttgacaattg |
1540691 |
T |
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| Q |
160 |
aatccaaatcccattttgtccattattttcatatgcgtaagagtgtgaaaggaaggcc |
217 |
Q |
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| T |
1540690 |
aatccaaat-ccaatttgttaattattttcatatgcgtaagagtgtgaaaagaaggcc |
1540634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 13977771 - 13977861
Alignment:
| Q |
53 |
tccaaatcttgttcatagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaatccatagttaatcctatttcgtatag |
143 |
Q |
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| T |
13977771 |
tccaaatcttgtttatagaaaatcatctttagttagatggggaaagtcatgtgctattgttcaaattcatagttaatcctatttcggatag |
13977861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 28514348 - 28514420
Alignment:
| Q |
96 |
aaatcatgtgctattgttcaaatccatagttaatcctat-ttcgtataggagcagttgacaattgaatccaaat |
168 |
Q |
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|||||| ||| ||||||||||||||||||| |||||||| |||| | | || |||||||||||||||| ||||| |
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| T |
28514348 |
aaatcacgtgttattgttcaaatccatagtcaatcctatcttcg-aaacgaacagttgacaattgaatgcaaat |
28514420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 21107091 - 21107233
Alignment:
| Q |
19 |
gttcttttcttacgcgtattgaatagaacactgatccaaatcttgttcatagaaaatcgtctttag----ttagatggggaaaatcatgtgctattgttc |
114 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21107091 |
gttcttttcttacgcgtattgaatagaacacttatccaaatcttgtttatagaaaatcgtctttagttagttagatggggaaaatcatgtgctattgttc |
21107190 |
T |
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| Q |
115 |
aaatccatagttaatcctatttcgtataggagcagttgacaat |
157 |
Q |
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| T |
21107191 |
aaatccatagttaatcctatttcggataagagcagtggacaat |
21107233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 34388533 - 34388603
Alignment:
| Q |
66 |
catagaaaatcgtctttagttagatggggaaaatcatgtgctattgttcaaatccatagttaatcctattt |
136 |
Q |
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| T |
34388533 |
catagaaaatcgtttttatttagatcgtaaaaatcatgtgttattgttgaaatccatagttaatcatattt |
34388603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 34389574 - 34389634
Alignment:
| Q |
148 |
agttgacaattgaatccaaatcccattttgtccattattttcatatgcgt-aagagtgtga |
207 |
Q |
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| T |
34389574 |
agttgacaaatgaatcaatatccaattttgtccattattttcatatgcataaagagtgtga |
34389634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0625 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 4951 - 5020
Alignment:
| Q |
145 |
agcagttgacaattgaatccaaatcccattttgtccattattttcatatgcgtaagagtgtgaaaggaag |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4951 |
agcagttgacaattgaatccaaatcccattttgtccattattttcatatgcgtaagagtgtgaaaagaag |
5020 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 42601364 - 42601329
Alignment:
| Q |
20 |
ttcttttcttacgcgtattgaatagaacactgatcc |
55 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
42601364 |
ttcttttcttacgcgtattgaatagaacacttatcc |
42601329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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