View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12156_low_3 (Length: 343)

Name: NF12156_low_3
Description: NF12156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12156_low_3
NF12156_low_3
[»] chr1 (2 HSPs)
chr1 (23-339)||(33243910-33244225)
chr1 (23-339)||(33264083-33264398)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 23 - 339
Target Start/End: Original strand, 33243910 - 33244225
Alignment:
Q  23 tgcactgatacatggttaaaacgctggaatgaacaaaatcgccccgaaaccgcctcgcggggttttgaattatcaaggttctggaaatgggcattcatca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33243910 tgcactgatacatggttaaaacgctggaatgaacaaaatcgccc-gaaaccgcctcgcggggttttgaattatcaaggttctggaaatgggcattcatca 33244008  T
Q  123 aaatctgattttgatagctctgatgatgaagattttggtggtagtagaatggatagaattgttgagaaattgaagaaatttgggtatgaaagtgatgaaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33244009 aaatctgattttgatagctctgatgatgaagattttggtggtagtagaatggatagaattgttgagaaattgaagaaatttgggtatgaaagtgatgaaa 33244108  T
Q  223 atgagaatataaaagaagaaggagtgatagaaaaagggtcagtggaggatatattttatgtagaagaaggaatgttgcctaatacaagaggcgggttttc 322  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33244109 atgagaatataaaagaagaaggagtgatagaaaaagggtcaatggaggatatattttatgtagaagaaggaatgttgcctaatacaagaggcgggttttc 33244208  T
Q  323 gccggaatcaccatttg 339  Q
    |||||||||||||||||    
T  33244209 gccggaatcaccatttg 33244225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 23 - 339
Target Start/End: Original strand, 33264083 - 33264398
Alignment:
Q  23 tgcactgatacatggttaaaacgctggaatgaacaaaatcgccccgaaaccgcctcgcggggttttgaattatcaaggttctggaaatgggcattcatca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33264083 tgcactgatacatggttaaaacgctggaatgaacaaaatcgccc-gaaaccgcctcgcggggttttgaattatcaaggttctggaaatgggcattcatca 33264181  T
Q  123 aaatctgattttgatagctctgatgatgaagattttggtggtagtagaatggatagaattgttgagaaattgaagaaatttgggtatgaaagtgatgaaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33264182 aaatctgattttgatagctctgatgatgaagattttggtggtagtagaatggatagaattgttgagaaattgaagaaatttgggtatgaaagtgatgaaa 33264281  T
Q  223 atgagaatataaaagaagaaggagtgatagaaaaagggtcagtggaggatatattttatgtagaagaaggaatgttgcctaatacaagaggcgggttttc 322  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33264282 atgagaatataaaagaagaaggagtgatagaaaaagggtcaatggaggatatattttatgtagaagaaggaatgttgcctaatacaagaggcgggttttc 33264381  T
Q  323 gccggaatcaccatttg 339  Q
    |||||||||||||||||    
T  33264382 gccggaatcaccatttg 33264398  T

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