View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12157_low_1 (Length: 353)

Name: NF12157_low_1
Description: NF12157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12157_low_1
NF12157_low_1
[»] chr3 (16 HSPs)
chr3 (1-341)||(4272106-4272446)
chr3 (5-99)||(25713426-25713520)
chr3 (8-101)||(24574904-24574997)
chr3 (5-102)||(33119622-33119719)
chr3 (25-101)||(6784086-6784162)
chr3 (7-86)||(24150832-24150911)
chr3 (5-86)||(19552148-19552229)
chr3 (5-86)||(26555817-26555898)
chr3 (5-86)||(35730935-35731016)
chr3 (5-86)||(36055007-36055088)
chr3 (5-86)||(38682429-38682510)
chr3 (29-85)||(34292505-34292561)
chr3 (5-89)||(50900444-50900528)
chr3 (5-46)||(43151162-43151203)
chr3 (13-45)||(28146300-28146332)
chr3 (25-89)||(30588862-30588926)
[»] chr7 (10 HSPs)
chr7 (5-101)||(31494242-31494338)
chr7 (5-101)||(47031248-47031344)
chr7 (5-95)||(24939640-24939730)
chr7 (26-101)||(36355468-36355543)
chr7 (18-102)||(32630714-32630798)
chr7 (6-102)||(48545802-48545899)
chr7 (13-80)||(32630649-32630716)
chr7 (5-86)||(151861-151942)
chr7 (5-86)||(27418642-27418723)
chr7 (6-86)||(30110807-30110887)
[»] chr2 (10 HSPs)
chr2 (5-101)||(27090638-27090734)
chr2 (5-102)||(2372972-2373069)
chr2 (2-102)||(24936122-24936222)
chr2 (2-102)||(25684806-25684906)
chr2 (2-102)||(30046122-30046222)
chr2 (2-102)||(30137166-30137266)
chr2 (13-77)||(2485652-2485716)
chr2 (5-79)||(18176476-18176550)
chr2 (5-86)||(29940948-29941029)
chr2 (5-101)||(38822919-38823016)
[»] chr5 (4 HSPs)
chr5 (5-102)||(7857028-7857125)
chr5 (28-85)||(9689337-9689394)
chr5 (5-45)||(6902692-6902732)
chr5 (5-86)||(40410593-40410674)
[»] chr8 (9 HSPs)
chr8 (18-98)||(14723940-14724020)
chr8 (5-99)||(24296639-24296733)
chr8 (5-86)||(42274975-42275056)
chr8 (13-99)||(38806866-38806952)
chr8 (5-86)||(1606013-1606094)
chr8 (5-86)||(2112794-2112875)
chr8 (5-86)||(29260276-29260357)
chr8 (6-86)||(43605364-43605444)
chr8 (30-102)||(23185725-23185797)
[»] chr1 (4 HSPs)
chr1 (5-101)||(9191134-9191230)
chr1 (5-79)||(51826843-51826917)
chr1 (5-86)||(26882826-26882907)
chr1 (5-86)||(45318463-45318544)
[»] chr6 (1 HSPs)
chr6 (2-102)||(35164804-35164904)
[»] chr4 (3 HSPs)
chr4 (18-101)||(5116977-5117060)
chr4 (5-86)||(8584005-8584086)
chr4 (5-77)||(28847111-28847183)
[»] scaffold0016 (1 HSPs)
scaffold0016 (5-86)||(81782-81863)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 4272106 - 4272446
Alignment:
Q  1 aggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4272106 aggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatttttaaagattagaaataat 4272205  T
Q  101 ttatgcggtcttactcttcacaagggtgattccccttggactactttggccctgaagtcgaatcttcgcaaattgtgaccaaatcctcagaactgggatg 200  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||    
T  4272206 tcatgcggtcttactcttcgcaagggtgattccccttggactactttggccctgaagtcaaatctccgcaaattgtggccaaatcttcagaactgggatg 4272305  T
Q  201 tcacgcctctagggaagggttttttcgagttccattttaacacagttgatgatatgagacgggtgtaggctatgggggttgtgcatctcaaccccggctt 300  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||| ||||||||||||||||| |||    
T  4272306 tcacacctctagggaagggttttttcgagttccattttaacacggttgatgatatgagatgggtttgggctatgggggctgtgcatctcaaccccgactt 4272405  T
Q  301 acttagattcttttgctggtcttgtgatttcactccacagg 341  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4272406 acttagattcttttgctggtcttgtgatttcactccacagg 4272446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 25713520 - 25713426
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataa 99  Q
    ||||||| |||||||||| |||||||||||||||| ||||| || ||||||||||||||| |||||| |||||||| || |||||||||||||||    
T  25713520 tgtattgaattgggatttcgaaggattttaaaagagtttttagttatagaaaaatcttgaggtattccatcaagattttaaaagattagaaataa 25713426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 24574997 - 24574904
Alignment:
Q  8 attggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    |||| |||||||||| |||| ||||||||||| ||||| || ||| |||||||||||  |||||||||||||| || |||||||||||||||||    
T  24574997 attgaattgggattttgaagaattttaaaagactttttagttataaaaaaatcttgagatattcaatcaagattttaaaagattagaaataatt 24574904  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 33119719 - 33119622
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 102  Q
    ||||||| |||||||| | ||||||||||||||||| |||| || ||| |||||| | || ||||||||||||||| || ||||||||||||||||||    
T  33119719 tgtattgaattgggatattgaaggattttaaaagatattttagttataaaaaaatttcgaggtattcaatcaagattttaaaagattagaaataattt 33119622  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 6784162 - 6784086
Alignment:
Q  25 aaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    |||||||||| |||| ||||| || ||| |||||||||||  |||||||||||||| || |||||||||||||||||    
T  6784162 aaggattttataagactttttagttatacaaaaatcttgagatattcaatcaagattttaaaagattagaaataatt 6784086  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 24150911 - 24150832
Alignment:
Q  7 tattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||| |||||  ||||||||||||||||||||| ||  || ||||||||||  ||||||||||||||| |||||    
T  24150911 tattggattgagatttcaaaggattttaaaagatttttttgttttataaaaatcttgtggtattcaatcaagatttttaa 24150832  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 19552229 - 19552148
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  |||||||||||||||||||||  |  || |||| |||||  ||||||||||||||| |||||    
T  19552229 tgtattggattgagattttaaaggattttaaaagatttttttattttataaaagtcttgtggtattcaatcaagatttttaa 19552148  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 26555817 - 26555898
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  26555817 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 26555898  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 35730935 - 35731016
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||||||||| ||  || |||| |||||   |||||||||||||| |||||    
T  35730935 tgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtgatattcaatcaagatttttaa 35731016  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 36055088 - 36055007
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  36055088 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 36055007  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 38682429 - 38682510
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    ||||||| |||| |||||  ||||||||||||||| ||||| ||  || ||||||||||  ||||||||||||||| |||||    
T  38682429 tgtattgtattgagatttcaaaggattttaaaagacttttttgttttaaaaaaatcttgtggtattcaatcaagatttttaa 38682510  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 34292561 - 34292505
Alignment:
Q  29 attttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatcttta 85  Q
    |||||||||||||||||   |||| |||||||||| |||||||||||||||| ||||    
T  34292561 attttaaaagattttttaaaaataaaaaaatcttgtagtattcaatcaagattttta 34292505  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 50900528 - 50900444
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaaga 89  Q
    |||||||||||  |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| ||||||||    
T  50900528 tgtattggattaagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaaga 50900444  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 43151162 - 43151203
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttg 46  Q
    ||||||| |||||||||| |||||||||||||||| ||||||    
T  43151162 tgtattgaattgggattttgaaggattttaaaagactttttg 43151203  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 28146332 - 28146300
Alignment:
Q  13 attgggatttggaaggattttaaaagatttttt 45  Q
    ||||||||||||||||||||||||||| |||||    
T  28146332 attgggatttggaaggattttaaaagacttttt 28146300  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 30588862 - 30588926
Alignment:
Q  25 aaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaaga 89  Q
    ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| ||||||||    
T  30588862 aaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaaga 30588926  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 31494242 - 31494338
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  31494242 tgtattggattgggatttggaaggattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataatt 31494338  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 47031248 - 47031344
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    ||||||| |||||||||| |||||||||||||| | |||||||| |||||||||||||||  |||||||||||||| || ||| |||| ||||||||    
T  47031248 tgtattgaattgggattttgaaggattttaaaaaactttttggttatagaaaaatcttgagatattcaatcaagattttaaaaaattataaataatt 47031344  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 24939730 - 24939640
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 95  Q
    ||||||| ||||||| || ||| |||||||||||| |||||||| ||||||||||||||| ||||||||||| ||| || |||||||||||    
T  24939730 tgtattgcattgggagttcgaaagattttaaaagactttttggttatagaaaaatcttgaggtattcaatcatgattttaaaagattagaa 24939640  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 36355543 - 36355468
Alignment:
Q  26 aggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    ||||||||||| ||||||||||| ||| ||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  36355543 aggattttaaatgattttttggttataaaaaaatcgtgaggtattcaatcaagattttaaaagattagaaataatt 36355468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 32630714 - 32630798
Alignment:
Q  18 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 102  Q
    ||||| ||||||||||||| || |||||| | ||| ||||||||||| ||||||||||||| | || ||||||||||||||||||    
T  32630714 gattttgaaggattttaaatgactttttgcttataaaaaaatcttgaggtattcaatcaagcttttaaaagattagaaataattt 32630798  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 48545899 - 48545802
Alignment:
Q  6 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaa-tcttgaagtattcaatcaagatctttaaagattagaaataattt 102  Q
    |||||| |||| ||||| ||| |||||||||||||||||| ||  || ||||| |||||| ||||||||||||||| || || |||||||||||||||    
T  48545899 gtattgaattgagattttgaaagattttaaaagattttttagttctaaaaaaaatcttgaggtattcaatcaagattttaaaggattagaaataattt 48545802  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 32630649 - 32630716
Alignment:
Q  13 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagat 80  Q
    |||| ||||| ||||||||||||| ||  ||||||| ||| ||||||||||| |||||||||||||||    
T  32630649 attgagattttgaaggattttaaatgacgttttggttataaaaaaatcttgaggtattcaatcaagat 32630716  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 151861 - 151942
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||   |||||||||||||| |||||    
T  151861 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgatattcaatcaagatttttaa 151942  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 27418723 - 27418642
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||| ||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  27418723 tgtactggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 27418642  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 30110807 - 30110887
Alignment:
Q  6 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    ||||||||||| |||||  ||| ||||||||||| ||||| ||  || |||| ||||| |||||||||| ||||| |||||    
T  30110807 gtattggattgagatttcaaagaattttaaaagacttttttgttttataaaagtcttgtagtattcaattaagatttttaa 30110887  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 27090638 - 27090734
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    ||||||||||||||||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  27090638 tgtattggattgggatttccaaagattttaaaagattttttggttatagaaaaatcttgaagtattcaatcaagattttaaaagattagaaataatt 27090734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 2372972 - 2373069
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 102  Q
    ||||||| |||||||||| |||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  2372972 tgtattgaattgggatttcgaaggattttaaaagacttttttgttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataattt 2373069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 24936222 - 24936122
Alignment:
Q  2 ggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||||||||    
T  24936222 ggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaaataatt 24936123  T
Q  102 t 102  Q
    |    
T  24936122 t 24936122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 25684906 - 25684806
Alignment:
Q  2 ggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||||||||    
T  25684906 ggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaaataatt 25684807  T
Q  102 t 102  Q
    |    
T  25684806 t 25684806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 30046122 - 30046222
Alignment:
Q  2 ggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| ||||||||||| ||||||||||| ||| || ||| |||||||||||||    
T  30046122 ggttgtattaaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgaggtattcaatcatgattttaaaatattagaaataatt 30046221  T
Q  102 t 102  Q
    |    
T  30046222 t 30046222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 30137166 - 30137266
Alignment:
Q  2 ggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| ||||||||||| ||||||||||| ||| || ||| |||||||||||||    
T  30137166 ggttgtattaaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgaggtattcaatcatgattttaaaatattagaaataatt 30137265  T
Q  102 t 102  Q
    |    
T  30137266 t 30137266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 2485716 - 2485652
Alignment:
Q  13 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 77  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||||||||  |||||||||||    
T  2485716 attgggatttcgaagaattttaaaagattttttggttatagaaaaatcttgagatattcaatcaa 2485652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 18176550 - 18176476
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaaga 79  Q
    ||||||| |||  |||||| | |||||||||||||||||||  ||||| ||||||||||  ||||||||||||||    
T  18176550 tgtattgaattaagatttgaagggattttaaaagattttttaataataaaaaaatcttgtggtattcaatcaaga 18176476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 29940948 - 29941029
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  29940948 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 29941029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 38823016 - 38822919
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttt-tggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    ||||||| ||||  |||| |||||||| ||||||| |||| | || ||| |||||||| || | ||||||||||||| || |||||||||||||||||    
T  38823016 tgtattgaattgaaattttgaaggattgtaaaagacttttatagttataaaaaaatctcgaggcattcaatcaagattttaaaagattagaaataatt 38822919  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 7857028 - 7857125
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 102  Q
    |||||| ||||| ||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  7857028 tgtattagattgagatttagaaggattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaataattt 7857125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 9689394 - 9689337
Alignment:
Q  28 gattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatcttta 85  Q
    ||||||||||||||||||  | ||| ||||||||||| ||||||||||||||| ||||    
T  9689394 gattttaaaagattttttaattataaaaaaatcttgaggtattcaatcaagattttta 9689337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 6902732 - 6902692
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagatttttt 45  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  6902732 tgtattggattgagatttggaaggattttaaaagacttttt 6902692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 40410593 - 40410674
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  | ||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  40410593 tgtattggattgagatttcaatggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 40410674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 14724020 - 14723940
Alignment:
Q  18 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaata 98  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  14724020 gatttggaaggattttaaaagacttttttgttatagaaaaatcttgaagtattcaatcaagattttaaaagattagaaata 14723940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 24296733 - 24296639
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataa 99  Q
    ||||||| |||||||||| ||| |||||||||||| |||||||| ||||||||||||||| ||||||||||| ||| || |||||||| ||||||    
T  24296733 tgtattgaattgggatttcgaaagattttaaaagactttttggttatagaaaaatcttgaggtattcaatcatgattttaaaagattataaataa 24296639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 42274975 - 42275056
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||||||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  42274975 tgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 42275056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 38806952 - 38806866
Alignment:
Q  13 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataa 99  Q
    |||||||||| ||  ||||||| |||| ||||  || ||| ||||||||||| ||||||||||||||| || | |||||||||||||    
T  38806952 attgggattttgatagattttagaagacttttaagttataaaaaaatcttgaggtattcaatcaagattttaacagattagaaataa 38806866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 1606094 - 1606013
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  1606094 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 1606013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 2112794 - 2112875
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  2112794 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 2112875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 29260357 - 29260276
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  29260357 tgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 29260276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 43605444 - 43605364
Alignment:
Q  6 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  43605444 gtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 43605364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 23185725 - 23185797
Alignment:
Q  30 ttttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 102  Q
    |||||||||| |||||  | ||| |||||||| || ||||||||||||||| || | | ||||||||||||||    
T  23185725 ttttaaaagactttttacttataaaaaaatctcgaggtattcaatcaagattttaatatattagaaataattt 23185797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 9191134 - 9191230
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    |||||||||||| |||||||||  ||||||||||| |||||||| |||||||||||||||  |||||||||||||| || |||||||||||||||||    
T  9191134 tgtattggattgagatttggaaaaattttaaaagactttttggttatagaaaaatcttgagttattcaatcaagattttaaaagattagaaataatt 9191230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 51826917 - 51826843
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaaga 79  Q
    ||||||| |||  |||||| | ||||||||||||| |||||  ||||| ||||||||||  ||||||||||||||    
T  51826917 tgtattgaattaagatttgaagggattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaaga 51826843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 26882907 - 26882826
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||   |||||||||||||| |||||    
T  26882907 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgttattcaatcaagatttttaa 26882826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 45318463 - 45318544
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| ||||   ||||||||||||||| |||||    
T  45318463 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttctggtattcaatcaagatttttaa 45318544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 35164804 - 35164904
Alignment:
Q  2 ggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||||||||    
T  35164804 ggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaaataatt 35164903  T
Q  102 t 102  Q
    |    
T  35164904 t 35164904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 5116977 - 5117060
Alignment:
Q  18 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 101  Q
    ||||||||| ||||||||||||  ||||  | ||| ||||||||| | ||||||||||||||| || | |||||||||||||||    
T  5116977 gatttggaaagattttaaaagaccttttaattataaaaaaatcttaaggtattcaatcaagattttaagagattagaaataatt 5117060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 8584086 - 8584005
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| |||||  |  || |||| |||||  ||||||||||||||| |||||    
T  8584086 tgtattggattgagatttcaaaggattttaaaagacttttttattttataaaagtcttgtggtattcaatcaagatttttaa 8584005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 28847183 - 28847111
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 77  Q
    |||||||||||| |||||  ||||||||||||||| |||||  ||||| |||| ||| |  ||||||||||||    
T  28847183 tgtattggattgagattttaaaggattttaaaagacttttttataataaaaaagtctagtggtattcaatcaa 28847111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 81863 - 81782
Alignment:
Q  5 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 86  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  81863 tgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 81782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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