View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12157_low_3 (Length: 293)
Name: NF12157_low_3
Description: NF12157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12157_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 4330305 - 4330037
Alignment:
| Q |
18 |
agattaccaagtgtgtctgcaaatgttgaagtgttaaatattgccaataactcaatttcaggtccaatttcttctccttttgtatgtgaaagattgaatt |
117 |
Q |
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| T |
4330305 |
agattaccaagtgtgtctgcaaatgttgaagtgttaaatattgccaataactcaatttcaggtccaatttcttctccttttctatgtgaaagattgaatt |
4330206 |
T |
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| Q |
118 |
ttgagaacaagttaactgtgcttgatgtttcaaataacttgttatctggtaatcttggccactgttggattcattggcaaaatttaatgcacttgaattt |
217 |
Q |
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| T |
4330205 |
ttgagaacaagttaactgtgcttgatgtttcaaataacttgttatctggtaatcttggccactgttggattcattggcaaaatttaatgcacttgaattt |
4330106 |
T |
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| Q |
218 |
aggaagaaacaatttgtctggtgaaattccaaactccattggttttttatctgaacttgaatctctgct |
286 |
Q |
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| T |
4330105 |
aggaagaaacaatttgtctggtgaaattccaaactccattggttttttatctgaacttgaatctttgct |
4330037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 4497609 - 4497877
Alignment:
| Q |
18 |
agattaccaagtgtgtctgcaaatgttgaagtgttaaatattgccaataactcaatttcaggtccaatttcttctccttttgtatgtgaaagattgaatt |
117 |
Q |
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| T |
4497609 |
agattgccaagtgtgtctacaaatattgatgtgttaaatattgccaataactcaatttcaggtccaatttcttcaacttttctatgcaaaaaaatgaatt |
4497708 |
T |
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| Q |
118 |
ttgagaacaagttaactgtgcttgatgtttcaaataacttgttatctggtaatcttggccactgttggattcattggcaaaatttaatgcacttgaattt |
217 |
Q |
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| T |
4497709 |
ttgagaacaagttaactgtgcttgatgtttcaaataacttgttatctggtgatcttggtcactgttggatacattggcaaaatttaatgcacttgaattt |
4497808 |
T |
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| Q |
218 |
aggaagaaacaatttgtctggtgaaattccaaactccattggttttttatctgaacttgaatctctgct |
286 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| |
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| T |
4497809 |
aggaagaaacaatttgtctggtgaaattccaaatcccatcggttttttatctgaacttgaatctttgct |
4497877 |
T |
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