View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12158_high_6 (Length: 323)
Name: NF12158_high_6
Description: NF12158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12158_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 4761650 - 4761330
Alignment:
| Q |
1 |
caaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacgatttcaattgcg |
100 |
Q |
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| T |
4761650 |
caaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacgatttcaattgcg |
4761551 |
T |
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| Q |
101 |
tgtatgaatatgtccttttcatagaacaattgggtataaacgcaaccttaattataatgtaattattaattattatggtttaccaacaaaccccgcctat |
200 |
Q |
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| T |
4761550 |
tgtatgaat--gtccttttcattgaacaattgggtataaacgcaaccttaattataatgtaattattaattattatggtttaccaataaaccctgcctat |
4761453 |
T |
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| Q |
201 |
tgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaatctatgcatggtaagatataataagaaaaa |
300 |
Q |
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| T |
4761452 |
tgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaatctatgcatggtaagatataataagaaaaa |
4761353 |
T |
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| Q |
301 |
tggttctggttccacttagtcat |
323 |
Q |
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| T |
4761352 |
tgattctggttccacttagtcat |
4761330 |
T |
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