View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12158_high_8 (Length: 314)
Name: NF12158_high_8
Description: NF12158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12158_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 4573330 - 4573029
Alignment:
| Q |
2 |
atttattggtgcttccatttttgattgcttgtgttagacattggtctagattaatctcatcctacatattctttgacaggatctatcacattgtaccgaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
4573330 |
atttattggtgcttccatttttgattgcttgtgttagacattggtctagattaatctcatcctacatattctttgacaggatatatcacattgtactgaa |
4573231 |
T |
|
| Q |
102 |
acagctttcgaaactgttgagaacaagcgcaagccactagtttgtaaggatctaaggaaaatttgggacaagtatgatccaaatcttccttgggaaaagg |
201 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4573230 |
acagctttccaaactgttgagaacaagcgcaagccactagtttgtaaggatctaaggaaaatttgggacaagtatgatccaaatcttccttgggaaaagg |
4573131 |
T |
|
| Q |
202 |
gatattacaatgaatcaaacacattgcttttggatgattctccccacaaggcattgcttaatcctgtaaataaacttacccttcctttgtatttttcttc |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4573130 |
gatattacaatgaatcaaacacattgcttttggatgattctccccacaaggcattgcttaatcctgtaaataaactaacccttcctttgtatttttcttc |
4573031 |
T |
|
| Q |
302 |
at |
303 |
Q |
| |
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|| |
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| T |
4573030 |
at |
4573029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 55 - 303
Target Start/End: Complemental strand, 4600682 - 4600434
Alignment:
| Q |
55 |
atctcatcctacatattctttgacaggatctatcacattgtaccgaaacagctttcgaaactgttgagaacaagcgcaagccactagtttgtaaggatct |
154 |
Q |
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||||||| |||||||||||||||||| | || ||||||||||| |||||| ||||| ||||| || | ||||||| |||||||||||||| ||||||| | |
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| T |
4600682 |
atctcattctacatattctttgacagaacctgtcacattgtactgaaacaactttcaaaactcttcaaaacaagcacaagccactagtttttaaggattt |
4600583 |
T |
|
| Q |
155 |
aaggaaaatttgggacaagtatgatccaaatcttccttgggaaaagggatattacaatgaatcaaacacattgcttttggatgattctccccacaaggca |
254 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| |
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| T |
4600582 |
aaggaaaatttggaacaagtatgatcctaatcttccttgggagaagggatattacaatgagtcaaacacattgctgttggatgattctccctacaaggca |
4600483 |
T |
|
| Q |
255 |
ttgcttaatcctgtaaataaacttacccttcctttgtatttttcttcat |
303 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
4600482 |
ctgcttaatcctgtaaatcaactaacccttcctttgtatttttcttcat |
4600434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 45 - 284
Target Start/End: Complemental strand, 4584514 - 4584275
Alignment:
| Q |
45 |
gtctagattaatctcatcctacatattctttgacaggatctatcacattgtaccgaaacagctttcgaaactgttgagaacaagcgcaagccactagttt |
144 |
Q |
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||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
4584514 |
gtctagattaatctcattctacatattctttgacaggatttgtcacattgtactgaaacagctttcaaaactcttgagaacaagcgcaagccactagttt |
4584415 |
T |
|
| Q |
145 |
gtaaggatctaaggaaaatttgggacaagtatgatccaaatcttccttgggaaaagggatattacaatgaatcaaacacattgcttttggatgattctcc |
244 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| |
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| T |
4584414 |
ttaaggatttaaggaaaatttgggacaagtatgatccgaatcttccttgggagaagaaatattacaatgactcgaacacgttgctgctggatgattctcc |
4584315 |
T |
|
| Q |
245 |
ccacaaggcattgcttaatcctgtaaataaacttaccctt |
284 |
Q |
| |
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| |||||||||| |||||||||||||||||||| |||||| |
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| T |
4584314 |
ctacaaggcattccttaatcctgtaaataaactaaccctt |
4584275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 39 - 276
Target Start/End: Complemental strand, 4592264 - 4592027
Alignment:
| Q |
39 |
acattggtctagattaatctcatcctacatattctttgacaggatctatcacattgtaccgaaacagctttcgaaactgttgagaacaagcgcaagccac |
138 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| | || |||||||| |||||||||||| ||||| ||||||||||||||||||||| |
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| T |
4592264 |
acattggtctagattaatctcattctacatattctttgacaggatatgtctcattgtactgaaacagctttcaaaactcttgagaacaagcgcaagccac |
4592165 |
T |
|
| Q |
139 |
tagtttgtaaggatctaaggaaaatttgggacaagtatgatccaaatcttccttgggaaaagggatattacaatgaatcaaacacattgcttttggatga |
238 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| || |||||||| | ||||||| |
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| T |
4592164 |
tagtttttaaggatttaaggaaaatttgggacaagtatgatccgaatcttccttgggagaggggatattacaatgagtcgaacacattattgctggatga |
4592065 |
T |
|
| Q |
239 |
ttctccccacaaggcattgcttaatcctgtaaataaac |
276 |
Q |
| |
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|||||| ||||||| |||||||||| |||||||||| |
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| T |
4592064 |
ttctccttacaaggcgctgcttaatccagtaaataaac |
4592027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 4605651 - 4605498
Alignment:
| Q |
124 |
acaagcgcaagccactagtttgtaaggatctaaggaaaatttgggacaagtatgatccaaatcttccttgggaaaagggatattacaatgaatcaaacac |
223 |
Q |
| |
|
||||||||||| || | || | ||||||||| || ||||||||||| ||||| ||||| |||||||||||||| ||||| || |||||||||||||| || |
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| T |
4605651 |
acaagcgcaagacagtggtgtttaaggatctgagaaaaatttgggataagtacgatccgaatcttccttgggagaaggggtactacaatgaatcaaatac |
4605552 |
T |
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| Q |
224 |
attgcttttggatgattctccccacaaggcattgcttaatcctgtaaataaact |
277 |
Q |
| |
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||||||||||||||| |||||| |||||| || |||||||||||||||||||| |
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| T |
4605551 |
attgcttttggatgactctccctacaaggggttacttaatcctgtaaataaact |
4605498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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