View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12159_high_1 (Length: 779)
Name: NF12159_high_1
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12159_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 571; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 18 - 650
Target Start/End: Original strand, 14247848 - 14248479
Alignment:
| Q |
18 |
gttcttgttgcaattcgagtcactaatgtcatgtttgtttatgggtgtgatagtaagtcttgtgtctcatgtttgcacaacatgaattttctaaagcacc |
117 |
Q |
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| T |
14247848 |
gttcttgttgcaattcgagtcactaatgtcatttttgtttatgggtttgatagtaaatcttgtgtctcatgtttgcacaacatgaattttctaaagcacc |
14247947 |
T |
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| Q |
118 |
aaacagtagtagtgtgacaatgtgtactgatattgttatatttttagtgctcaatgctgagatgagtcttgtggctgggtaggtaggttcacgtcctgta |
217 |
Q |
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| T |
14247948 |
aaacagtagtagtgtgacaatgtgtactgatattgttatatttttagtgctcaatgctgagatgagtcttgtggctggggaggtaggttcacgtcctgta |
14248047 |
T |
|
| Q |
218 |
ctaagtgttgcaccccatttgctctgataggctccaaaatgacctttccaaggtcaacgcccttattgggatggagcaagatgaagtctaagataggaac |
317 |
Q |
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| T |
14248048 |
ctaagtgttgcgccccatttgctctgataggctccaaaatgacctttccaaggtcaacgcccttattgggatggagcaagatgaagtctaagataggaac |
14248147 |
T |
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| Q |
318 |
tcaacatgcttagcagtcatgagcaaatggttgagtaactttcaacccttcgtcccaaattctatgttattaagactactttctaagacgtccaattgtt |
417 |
Q |
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| T |
14248148 |
tcaacatgcttagcagtcatgagcaaatggttgagtaactttcaacccttcgtcccaaattctatgttattaagactactttctaagacgtccaattgtt |
14248247 |
T |
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| Q |
418 |
tgaattagctagctaggaaaattttgttcgattgtgacgatgagtgcacaaagccaataatattcaattcagtagaatttactcaatgtcttttgttgat |
517 |
Q |
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| T |
14248248 |
tgaattagctagctaggaaaattttgttcgatggtgacgatgagtgcacaaagccaagaatattcaattcagtagaatttactcaatgtcttttgttgat |
14248347 |
T |
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| Q |
518 |
gttctgctcaatatagtcaatagagattattgttatagaaaatcaaagggaagcagtcaatggactcggactgatgttcatgatata-ttacctaaaagt |
616 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
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| T |
14248348 |
attctgctcaatatagtcaatagagcttattgttatagaaaatcaaagggaagcagtcaatgaactcggactgatgttcatgatatatttacct--aagt |
14248445 |
T |
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| Q |
617 |
ccttttgatcacggagtataattgccaaattacc |
650 |
Q |
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| T |
14248446 |
ccttttgatctcggagtataattgccaaattacc |
14248479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 645 - 768
Target Start/End: Original strand, 14248765 - 14248888
Alignment:
| Q |
645 |
attaccgttttctagttcaaagattgatgaaatgaaatggttattcatggttttggattatggtccaatggagaaaatgatgagaggttcactaggagag |
744 |
Q |
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| T |
14248765 |
attaccgttttctagttcaaagattgatgaaatgaaatggttattcatggttttggattatggtccaatggagaaaatgatgagaggttcactaggagag |
14248864 |
T |
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| Q |
745 |
tgtgagagctcctagcacaggttc |
768 |
Q |
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| T |
14248865 |
tgtgagagctcctagcagaggttc |
14248888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 728
Target Start/End: Original strand, 14866132 - 14866262
Alignment:
| Q |
599 |
gatatattacctaaaag-tccttttgatcacggagtataattgccaaattaccgttttctagttcaaagattgatgaaatgaaatggttattcatggttt |
697 |
Q |
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|||| |||||||||||| || |||| | | |||||||| |||| |||||||||||||||| || ||||||||||| ||||| || |||||| || || |
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| T |
14866132 |
gataaattacctaaaaggtcgtttttaccccggagtattcttgcgaaattaccgttttctacatccaagattgatgagatgaaggggctattcaaggctt |
14866231 |
T |
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| Q |
698 |
tggattatggtccaatggagaaaatgatgag |
728 |
Q |
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| T |
14866232 |
cggataatggttcaatggaaaagatgatgag |
14866262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 728
Target Start/End: Complemental strand, 14234922 - 14234845
Alignment:
| Q |
651 |
gttttctagttcaaagattgatgaaatgaaatggttattcatggttttggattatggtccaatggagaaaatgatgag |
728 |
Q |
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|||||||| ||||||||| |||||||||||| |||| || || || |||| ||||| |||| |||||||||||||| |
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| T |
14234922 |
gttttctacttcaaagatcgatgaaatgaaaccattatgcaaggcttcggataatggttcaatagagaaaatgatgag |
14234845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 14263349 - 14263398
Alignment:
| Q |
271 |
tcaacgcccttattgggatggagcaagatgaagtctaagataggaactca |
320 |
Q |
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| T |
14263349 |
tcaacgacctaattgggatggagcaacatgaagtctaaactaggaactca |
14263398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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