View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12159_high_12 (Length: 233)
Name: NF12159_high_12
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12159_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 1900619 - 1900812
Alignment:
| Q |
18 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
1900619 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggagaagcttagctctgggcggtaggagtactggtcttctgtaattttcc |
1900718 |
T |
|
| Q |
118 |
tttttcgtaaataatagattccatttattaaacgttgttgtgttattttatccattaggttctgggttcctaacaggatatatggtaaatgggg |
211 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1900719 |
tttttcgtaaataatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatggtaaatgggg |
1900812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 1910065 - 1910258
Alignment:
| Q |
18 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
1910065 |
aaaggagagagggaagggctttagagagtcatctcttatctaggaggactggagaagcttagctctgggcggtaggagtactggtcttctgtaattttcc |
1910164 |
T |
|
| Q |
118 |
tttttcgtaaataatagattccatttattaaacgttgttgtgttattttatccattaggttctgggttcctaacaggatatatggtaaatgggg |
211 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1910165 |
tttttcgtaaataatacattccatttattaagtgttgttgtgttattttctccgtaaggttctgggttcctaacaggatatatggtaaatgggg |
1910258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 1893770 - 1893910
Alignment:
| Q |
71 |
ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc |
170 |
Q |
| |
|
||||||| |||||| || |||||||||||| || |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||| |
|
|
| T |
1893770 |
ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc |
1893869 |
T |
|
| Q |
171 |
attaggttctgggttcctaacaggatatatggtaaatgggg |
211 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
1893870 |
gttaggttctgggtccctgacaggctatattgtaaatgggg |
1893910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 1903216 - 1903356
Alignment:
| Q |
71 |
ggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttatcc |
170 |
Q |
| |
|
||||||| |||||| || |||||||||||| || |||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||| |
|
|
| T |
1903216 |
ggagctttgctctgggcagtaggagtaccgttcaacggtaattttcctttttcgtaaatgatacattccatttattaagtgttgctgtgttattttctcc |
1903315 |
T |
|
| Q |
171 |
attaggttctgggttcctaacaggatatatggtaaatgggg |
211 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
1903316 |
gttaggttctgggtccctgacaggctatattgtaaatgggg |
1903356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 2934605 - 2934470
Alignment:
| Q |
69 |
gaggagcttagctctgagcggtaggagtaccggtcttttgtaattttcctttttcgtaaataatagattccatttattaaacgttgttgtgttattttat |
168 |
Q |
| |
|
||||||||| ||||| || |||||||||||| || |||||||||||||||| ||||||||| ||||||||| |||| ||||||||||| | |
|
|
| T |
2934605 |
gaggagctttcctctgggcagtaggagtaccgttcaacggtaattttcctttttcataaataatacattccattt-------gttgctgtgttattttct |
2934513 |
T |
|
| Q |
169 |
ccattaggttctgggttcctaacaggatatatggtaaatgggg |
211 |
Q |
| |
|
|| ||||||||| ||| ||||||||| || || |||||||||| |
|
|
| T |
2934512 |
ccgttaggttctaggtccctaacaggctacattgtaaatgggg |
2934470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University