View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12159_high_14 (Length: 232)

Name: NF12159_high_14
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12159_high_14
NF12159_high_14
[»] chr3 (4 HSPs)
chr3 (21-218)||(11006402-11006598)
chr3 (27-120)||(11015971-11016064)
chr3 (27-123)||(11024983-11025079)
chr3 (27-81)||(47452353-47452407)
[»] chr4 (9 HSPs)
chr4 (28-78)||(7800218-7800268)
chr4 (28-78)||(7813061-7813111)
chr4 (28-81)||(7822547-7822600)
chr4 (21-81)||(7789667-7789727)
chr4 (21-80)||(7774269-7774328)
chr4 (21-82)||(33134266-33134327)
chr4 (21-81)||(7238160-7238220)
chr4 (21-81)||(7770982-7771042)
chr4 (21-77)||(48862823-48862879)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 11006402 - 11006598
Alignment:
Q  21 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatacaggccggtcttcatctccatctgtcttccttctctgcaat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11006402 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatacaggccggtcttcgtctccatctgtcttccttctctgcaat 11006501  T
Q  121 tgtaactaatttaatttgtatgac-tgtgaaagataaagtattactacgttggtgatgaggtagtaagagagggctcagtgatatttaatccttctctg 218  Q
    ||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11006502 tgtaactaatttaatt--tatgacttgtgaaagataaagtattactacgttggtgatgagatagtaagagagggctcagtgatatttaatccttctctg 11006598  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 11015971 - 11016064
Alignment:
Q  27 gacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatacaggccggtcttcatctccatctgtcttccttctctgcaat 120  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  11015971 gacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatacaggccggtcttcttctccatctgtcttcctcctctgcaat 11016064  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 11024983 - 11025079
Alignment:
Q  27 gacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatacaggccggtcttcatctccatctgtcttccttctctgcaattgt 123  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| || |||||||||    
T  11024983 gacttcaccggtaacctcaacatgatttgtatgatcaattcatgaggcaaatacaggtcggtcttcttctccatctgtcttcctcctatgcaattgt 11025079  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 47452353 - 47452407
Alignment:
Q  27 gacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagataca 81  Q
    ||||||||||||||||||| |||||| || || ||||||||| |||| |||||||    
T  47452353 gacttcaccggcaacctcaccaagatctggattatcaattcaagaggtagataca 47452407  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 7800268 - 7800218
Alignment:
Q  28 acttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagat 78  Q
    |||||||||||||||||||||||||| | || ||||| |||||||||||||    
T  7800268 acttcaccggcaacctcaacaagattaggattatcaaatcatgaggcagat 7800218  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 7813111 - 7813061
Alignment:
Q  28 acttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagat 78  Q
    |||||||||||||||||||||||||| | || ||||| |||||||||||||    
T  7813111 acttcaccggcaacctcaacaagattaggattatcaaatcatgaggcagat 7813061  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 7822600 - 7822547
Alignment:
Q  28 acttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagataca 81  Q
    |||||||||||||||||||||||||| | || ||||| | ||||||||||||||    
T  7822600 acttcaccggcaacctcaacaagattaggattatcaaatgatgaggcagataca 7822547  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 7789727 - 7789667
Alignment:
Q  21 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagataca 81  Q
    ||||| ||||||||||||||||||| ||  ||||| || |||| |||||||||||||||||    
T  7789727 ataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagataca 7789667  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 7774269 - 7774328
Alignment:
Q  21 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatac 80  Q
    ||||| ||||||||||||| || || ||||||||| || |||||||||||||| ||||||    
T  7774269 ataagagacttcaccggcagccgcatcaagatttgaataatcaattcatgaggaagatac 7774328  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 33134266 - 33134327
Alignment:
Q  21 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatacag 82  Q
    ||||| ||||||||||| || |||||||  ||  | ||||||||||||||||||||||||||    
T  33134266 ataagagacttcaccggtaatctcaacagaataaggatgatcaattcatgaggcagatacag 33134327  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 7238160 - 7238220
Alignment:
Q  21 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagataca 81  Q
    ||||| |||||||| |||||||||| ||  ||||| ||||| | |||||||||||||||||    
T  7238160 ataagagacttcactggcaacctcatcagaatttggatgattagttcatgaggcagataca 7238220  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 7771042 - 7770982
Alignment:
Q  21 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagataca 81  Q
    ||||| ||||||||||||||||||| ||  ||||| || || | |||||||||||||||||    
T  7771042 ataagagacttcaccggcaacctcatcagaatttggattattagttcatgaggcagataca 7770982  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 48862879 - 48862823
Alignment:
Q  21 ataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcaga 77  Q
    ||||| ||||||||||| ||||| | || |||| | |||||||||||||||||||||    
T  48862879 ataagagacttcaccggtaaccttagcaggattaggatgatcaattcatgaggcaga 48862823  T

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