View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12159_high_15 (Length: 230)
Name: NF12159_high_15
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12159_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 31983701 - 31983805
Alignment:
| Q |
6 |
agtactcacaaaaatgatcaacacactttataactaaaggttttaccacctctggacaatcatctttagaaacgcatggaatgttagctgcgttttcaaa |
105 |
Q |
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| T |
31983701 |
agtactcacaaaaatgatcaatacactttataactaaaggtgttatcacctttggacaatcatctttagaaacacatggaatgttagctgcattttcaaa |
31983800 |
T |
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| Q |
106 |
attag |
110 |
Q |
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||||| |
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| T |
31983801 |
attag |
31983805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 31986336 - 31986440
Alignment:
| Q |
6 |
agtactcacaaaaatgatcaacacactttataactaaaggttttaccacctctggacaatcatctttagaaacgcatggaatgttagctgcgttttcaaa |
105 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
31986336 |
agtactcacaaaaatgatcaatacactttataactaaaggttttacaacctttggacaatcatctttagaaacacatggaatgttagctgcattttcaag |
31986435 |
T |
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| Q |
106 |
attag |
110 |
Q |
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||||| |
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| T |
31986436 |
attag |
31986440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 31983881 - 31983929
Alignment:
| Q |
182 |
aaaaatggtatacttatttccgcctttttaacaagaaactgagaaagaa |
230 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31983881 |
aaaaatggcatacttatttccgcctttttaacaagaaactgagaaagaa |
31983929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 31986515 - 31986552
Alignment:
| Q |
182 |
aaaaatggtatacttatttccgcctttttaacaagaaa |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
31986515 |
aaaaatggtatacttatttccgccttttcaacaagaaa |
31986552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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