View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12159_high_3 (Length: 495)
Name: NF12159_high_3
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12159_high_3 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 495
Target Start/End: Original strand, 17987604 - 17988090
Alignment:
| Q |
9 |
cagaacctgtgctgttggatatttcactcactgaattcgcaagagctccctgagttctttgaggatcacatgaaagaatggatgactgagttcggaaaat |
108 |
Q |
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| T |
17987604 |
cagaaactgtgctgttggatatttcactcgctgaattcgcaagagctccctgagttctttgaggatcacatgaaagaatggatgactgagttcggaaaat |
17987703 |
T |
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| Q |
109 |
accttactaatagttacccttttcttgaggggtgtggacctgatggtcttgctcttgtagacgaacttagggttgctgtttgtgagaatattaatctata |
208 |
Q |
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| T |
17987704 |
accttactaatagttacccttttcttgaggggtgtggacctgatggtcttgctcttgtagacgaacttagggttgctgtttgtgagaatattaatctata |
17987803 |
T |
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| Q |
209 |
tatggtaaagtatgaggaggagtttaagggattcttgagtggttttgcacatgatgtgtggagtttgttgagaaatgtatcacaatcgagtagtcgtgat |
308 |
Q |
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| T |
17987804 |
tatggtaaagtatgaggaggagtttaaggaacacttgagtggttttgcacaagatgtgtggaatttgttaaggaacgtgtcacaatcgagtggtcgtgat |
17987903 |
T |
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| Q |
309 |
caacttgctgtcacggctatcaagtttttgaccacggttagcaccagtgttgaccatgctttattcgctgctgatgcgactatactcctgatttgccaag |
408 |
Q |
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| T |
17987904 |
caacttgctgtcacggctatcaagtttttaaccacagttagcacaagtgttcaccatgctttattcgctgctgatgcgactatactcctgatttgccaag |
17988003 |
T |
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| Q |
409 |
gcattgtgatcccaaatgttatgttgagggaagacgatgaagagcagtttgagatggaccctatggagtatattaggaaggatatgg |
495 |
Q |
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| T |
17988004 |
gcattgtgatcccaaatgttatgttgagggaagacgatgaagagcagtttgagatggaccctatggagtatattaggaaggatatgg |
17988090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 36 - 495
Target Start/End: Complemental strand, 9752873 - 9752417
Alignment:
| Q |
36 |
tcactgaattcgcaagagctccctgagttctttgaggatcacatgaaagaatggatgactgagttcggaaaataccttactaatagttacccttttcttg |
135 |
Q |
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| T |
9752873 |
tcactgaattttcaagagttgcctgagttttttgaggatcatatgaatgaatggatgggtgaatttaggaaatatttgactactagttatccttctcttg |
9752774 |
T |
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| Q |
136 |
aggggtgtggacctgatggtcttgctcttgtagacgaacttagggttgctgtttgtgagaatattaatctatatatggtaaagtatgaggaggagtttaa |
235 |
Q |
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| T |
9752773 |
aggggagtag---tgatggtcttgctcttgtggatgagcttcgggctgcggtttgtgagaatattaatctgtacatggagaagaatgaggaggagtttaa |
9752677 |
T |
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| Q |
236 |
gggattcttgagtggttttgcacatgatgtgtggagtttgttgagaaatgtatcacaatcgagtagtcgtgatcaacttgctgtcacggctatcaagttt |
335 |
Q |
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| T |
9752676 |
ggtttttttgaatgattttgcacttgctgtgtggactttgttagggaatgtgtcgcagtcgactagtcgtgaccagcttgcggttacggcgattaagttt |
9752577 |
T |
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| Q |
336 |
ttgaccacggttagcaccagtgttgaccatgctttattcgctgctgatgcgactatactcctgatttgccaaggcattgtgatcccaaatgttatgttga |
435 |
Q |
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| T |
9752576 |
ttgacgacggttagtacgagtgttcatcatagtttgtttgctgccgatgggattattccgcagatttgtcaggggattgtgattccaaatgtgaggttga |
9752477 |
T |
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| Q |
436 |
gggaagacgatgaagagcagtttgagatggaccctatggagtatattaggaaggatatgg |
495 |
Q |
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| T |
9752476 |
gggaggatgatgaggagttgtttgagatgaatcatattgagtatattaggagggatatgg |
9752417 |
T |
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