View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12159_high_4 (Length: 423)
Name: NF12159_high_4
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12159_high_4 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 33416697 - 33416476
Alignment:
| Q |
3 |
actgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggta |
102 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416697 |
actgattatattgttggtgatgacaagggttggaccgttgattttgattacactcaatgggctcaagacaaagtttttcgtgttggagacaacctaggta |
33416598 |
T |
|
| Q |
103 |
tgtaaaaggaaaaaataaatgtccatttggtttcaagtttatttagttcatagtcaattgcttaactaattagtgtatctcatagttataattaactttt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416597 |
tgtaaaaggaaaaaataaatgtccatttggtttcaagtttatttagttcatagtcaattgcttaactaattagtgtatctcatagttataattaactttt |
33416498 |
T |
|
| Q |
203 |
gtatttatcaaacatgatctaa |
224 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
33416497 |
gtatttatcaaacatgatctaa |
33416476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 251 - 423
Target Start/End: Complemental strand, 33416449 - 33416277
Alignment:
| Q |
251 |
caactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaag |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416449 |
caactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaag |
33416350 |
T |
|
| Q |
351 |
gatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtc |
423 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
33416349 |
gatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtc |
33416277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 33424768 - 33424566
Alignment:
| Q |
3 |
actgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
33424768 |
actgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcaatgggctcaagacaaagttttccgtgttggagacaacttaggta |
33424669 |
T |
|
| Q |
103 |
tgtaaaa-ggaaaaaataaatgtccatttggtttcaagtttatttagttcatagtcaattgcttaactaattagtgtatctcatagttataattaacttt |
201 |
Q |
| |
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||||||| |||||||| |||| | ||||||||||||||||||||||||| ||| |||| ||| |||||| |||||| || | || |||||||||||||| |
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| T |
33424668 |
tgtaaaagggaaaaaacaaattttcatttggtttcaagtttatttagtttataatcaactgcataactagttagtgcatattatgattataattaacttt |
33424569 |
T |
|
| Q |
202 |
tgt |
204 |
Q |
| |
|
||| |
|
|
| T |
33424568 |
tgt |
33424566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 251 - 423
Target Start/End: Complemental strand, 33410600 - 33410428
Alignment:
| Q |
251 |
caactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaag |
350 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
33410600 |
caactatgatccggcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaag |
33410501 |
T |
|
| Q |
351 |
gatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtc |
423 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
33410500 |
gatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtc |
33410428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 251 - 423
Target Start/End: Complemental strand, 33424502 - 33424330
Alignment:
| Q |
251 |
caactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaag |
350 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
33424502 |
caactatgatccggcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaag |
33424403 |
T |
|
| Q |
351 |
gatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtc |
423 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
33424402 |
gatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtc |
33424330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 33410853 - 33410664
Alignment:
| Q |
3 |
actgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33410853 |
actgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggta |
33410754 |
T |
|
| Q |
103 |
tg---taaaaggaaaaaataaatgtccatttggtttcaagtttatttagttcatagtcaattgcttaactaattagtgtatctcatagttataattaact |
199 |
Q |
| |
|
|| ||||||||||||| |||| |||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
33410753 |
tgtaataaaaggaaaaaacaaatatccatttggt---------------ttcatattcaattgtttaactaattagtgtatctcataattataattaact |
33410669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 251 - 423
Target Start/End: Original strand, 33428087 - 33428259
Alignment:
| Q |
251 |
caactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaag |
350 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |||||| |||| ||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33428087 |
caactatgacccttcaagacacaatgttttcaaagtgaacggcacattctttcagagatgcacttttccaccacaaaacgaagcactttctaccggaaag |
33428186 |
T |
|
| Q |
351 |
gatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcactgttcggctcgtc |
423 |
Q |
| |
|
||||| |||| ||||| ||||||| || ||||||||||||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
33428187 |
gatattattcccctaaagactgaagaaacaaagtggtatgtttgtggcatagctgataactgttctgctcgtc |
33428259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 282 - 420
Target Start/End: Complemental strand, 33436623 - 33436485
Alignment:
| Q |
282 |
aaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaaggatatcattcaactaaaaactgaaggaagaa |
381 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
33436623 |
aaagtgaatggtacactttttaaggactgcacttttccaccaaaaaatgaagcactctctacgggaaaggatatcattcaactaaaaacagaaggaagaa |
33436524 |
T |
|
| Q |
382 |
agtggtatgtttgtggcgtagctgatcactgttcggctc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
33436523 |
agtggtatgtttgtggcgtagctgatcattgttctgctc |
33436485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 33436864 - 33436761
Alignment:
| Q |
6 |
gatcacattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggtatgt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| |||| ||||| ||||| |||||||| |||||||| |||||| |
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|
| T |
33436864 |
gatcacattgttggtgatgacaagggttggactgttgattttaactatactcagtggactcaggacaaggttttccgtgttggtgacaaccttggtatgg |
33436765 |
T |
|
| Q |
106 |
aaaa |
109 |
Q |
| |
|
|||| |
|
|
| T |
33436764 |
aaaa |
33436761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 33427829 - 33427978
Alignment:
| Q |
5 |
tgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggtatg |
104 |
Q |
| |
|
|||||| ||||| ||||||||||| || ||||| || | || |||||||||| ||||| |||||||||||||||||||||| ||||| || |||||| |
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|
| T |
33427829 |
tgatcatattgtgggtgatgacaatggctggactattaacttcaattacactcaatgggcgtaagacaaagtttttcgtgttggtgacaatcttggtatg |
33427928 |
T |
|
| Q |
105 |
taaaaggaaaaaataaatgtccatttggtttcaagtttatttagttcata |
154 |
Q |
| |
|
|||||||| || | | | |||||||||||| |||||||||||||||||| |
|
|
| T |
33427929 |
taaaaggataatacgattttccatttggtttaaagtttatttagttcata |
33427978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 308 - 420
Target Start/End: Original strand, 5180 - 5292
Alignment:
| Q |
308 |
ctgcacttttccaccaaaaaacgaagcactttctaccggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgat |
407 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5180 |
ctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgat |
5279 |
T |
|
| Q |
408 |
cactgttcggctc |
420 |
Q |
| |
|
|| ||||| |||| |
|
|
| T |
5280 |
cattgttctgctc |
5292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 269 - 397
Target Start/End: Original strand, 24985049 - 24985177
Alignment:
| Q |
269 |
gcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaaggatatcattcaactaaaa |
368 |
Q |
| |
|
||||||||| || |||||| |||| | |||||| || ||||||||||||||| || |||| ||||||||||| ||||||||||| | |||||||| ||| |
|
|
| T |
24985049 |
gcacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaa |
24985148 |
T |
|
| Q |
369 |
actgaaggaagaaagtggtatgtttgtgg |
397 |
Q |
| |
|
|| |||||||||||||||||||| ||||| |
|
|
| T |
24985149 |
accgaaggaagaaagtggtatgtatgtgg |
24985177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 269 - 397
Target Start/End: Original strand, 24990879 - 24991007
Alignment:
| Q |
269 |
gcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaaggatatcattcaactaaaa |
368 |
Q |
| |
|
||||||||| || |||||| |||| | |||||| || ||||||||||||||| || |||| ||||||||||| ||||||||||| | |||||||| ||| |
|
|
| T |
24990879 |
gcacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaa |
24990978 |
T |
|
| Q |
369 |
actgaaggaagaaagtggtatgtttgtgg |
397 |
Q |
| |
|
|| |||||||||||||||||||| ||||| |
|
|
| T |
24990979 |
accgaaggaagaaagtggtatgtatgtgg |
24991007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 24984754 - 24984852
Alignment:
| Q |
4 |
ctgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggta |
102 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
24984754 |
ctgatcacgttgtgggtgatgaaaagggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaaccttggta |
24984852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 24990584 - 24990682
Alignment:
| Q |
4 |
ctgatcacattgttggtgatgacaagggttggaccgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaacctaggta |
102 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
24990584 |
ctgatcacgttgtgggtgatgaaaagggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaaccttggta |
24990682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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