View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12159_high_7 (Length: 365)
Name: NF12159_high_7
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12159_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 38247677 - 38247345
Alignment:
| Q |
17 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacaacttagacttacttctcgttcttcttttgtagtggatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247677 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacaacttagacttacttctcgttcttcttttgtagtggatg |
38247578 |
T |
|
| Q |
117 |
taaagttttcagataattagttacatatatgataatataaatagcgtgtcattgatggtatcaaagtaaaatatgattgatttatcaaagatgaataaag |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247577 |
taaagttttcagataattagttacacatatgataatataaatagcgtgtcattgatggtatcaaagtaaaatatgattgatttatcaaagatgaataaag |
38247478 |
T |
|
| Q |
217 |
aca---tgattgaaaagggtaactgaataatttacatttctgtgtattcagctagctataggagaaaaacaaatttgtaattttggctgaatccactata |
313 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247477 |
acatgatgattgaaaagggtaactgaataatttacatttctgtgtattcagctagctataggagaaaaacaaatttgtaattttggctgaatccactata |
38247378 |
T |
|
| Q |
314 |
ttgtttcatatggctatgctagaagtctgttct |
346 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
38247377 |
ttgtttcatatggctatgctagaagtctgttct |
38247345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 38252708 - 38252412
Alignment:
| Q |
17 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacaacttagacttacttctcgttcttcttttgtagtggatg |
116 |
Q |
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|||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||| |||||| |||||||||||||||||| | || | |
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| T |
38252708 |
gagcacaccggagtaatggggcttttctacatattggtggcagaacagctcccatatcaacaactcagacttttttctcgttcttcttttgtcgccgacg |
38252609 |
T |
|
| Q |
117 |
taaagttttcagataattagttacatatatgataatataaatagcgtgtcattgatggtatcaaagtaaaatatgattgatttatcaaagatgaataaag |
216 |
Q |
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|||| ||||| |||| ||||||||||||||||| |||||| | |||||||||||||||||| | |||| ||||||| |||||||||||||||||||||| |
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| T |
38252608 |
taaatttttctgatagttagttacatatatgatgatataagtggcgtgtcattgatggtattatggtaagatatgatcgatttatcaaagatgaataaag |
38252509 |
T |
|
| Q |
217 |
acatgattgaaaagggtaactgaataatt-tacatttctgtgtattcagctagctataggagaaaaacaaatttgtaattttggctgaatccactat |
312 |
Q |
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||||||||| ||||||||||||||||||| || | ||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||| |||||| |
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| T |
38252508 |
acatgattggaaagggtaactgaataattacacttctctgtgtattctgctagatataggagaaaaacaaatttgtatttttggcttaattcactat |
38252412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 38237215 - 38237029
Alignment:
| Q |
17 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacaacttagacttacttctcgttcttcttttgtagtggatg |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| | || |||||||||| ||| | ||||| |
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| T |
38237215 |
gagcacaccggagtaatgggacttttctacctattggtggcagaacagctcccataccaacacttcagacattctactcgttcttcattttttatggata |
38237116 |
T |
|
| Q |
117 |
taaa------gttttcagataattagttacatatatgataatataaatagcgtgtcattgatggtatcaaagtaaaatatgattgat |
197 |
Q |
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|||| ||| |||||||||||||||||||||||||||||| | | || |||| |||||| ||||||||| ||||||||||| |
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| T |
38237115 |
taaataatatacttttagataattagttacatatatgataatataagtggagtttcatggatggtgtcaaagtaatatatgattgat |
38237029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 38213311 - 38213038
Alignment:
| Q |
17 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaacaacttagacttacttctcgttcttcttttgtagtggatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| | || |||||||||| ||| | ||||| |
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| T |
38213311 |
gagcacactggagtaatgggacttttctacttattggtggcagaacaactcccataccaacacttcagacattctactcgttcttcattttttatggata |
38213212 |
T |
|
| Q |
117 |
taaa------gttttcagataattagttacatat--atgataatataaatagcgtgtcattgatggtatcaaagtaaaatatgattgatttatcaaagat |
208 |
Q |
| |
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|||| | ||| |||||||||| |||||| | | |||||||| | | || |||| |||||| ||||||||| ||||||||| |||||||| |
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| T |
38213211 |
taaataatatgcttttagataattagggacatataaagggtaatataagtggagtttcatggatggtgtcaaagtaatatatgattg----atcaaagag |
38213116 |
T |
|
| Q |
209 |
gaataaagacatgattgaaaagggtaactgaataatt-tacatttctgtgtattcagctagctataggagaaaaacaa |
285 |
Q |
| |
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||||||| ||| ||||| ||| |||||||| |||| || | ||| |||||||||||||||||||||||||||||| |
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| T |
38213115 |
gaataaatacaagattggcaagtgtaactgagaaattacacttctctttgtattcagctagctataggagaaaaacaa |
38213038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 38242325 - 38242254
Alignment:
| Q |
127 |
agataattagttacatatatgataatataaatagcgtgtcattgatggtatcaaagtaaaatatgattgatt |
198 |
Q |
| |
|
|||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
38242325 |
agataattagttacttaaatcataatataaatggcgtgtcattgatggtatcaaagtaaaatatgagtgatt |
38242254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 38219706 - 38219656
Alignment:
| Q |
20 |
cacactggagtaatgggacttttctacctattggtggcagaacaactccca |
70 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38219706 |
cacaatggtgtaatgggacttttctacctattggtggcagaacaactccca |
38219656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 38225796 - 38225743
Alignment:
| Q |
17 |
gagcacactggagtaatgggacttttctacctattggtggcagaacaactccca |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||| |||||| |
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|
| T |
38225796 |
gagcacactggagtaatgggacttttctacttgttggtggcagaacagctccca |
38225743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 38242412 - 38242369
Alignment:
| Q |
20 |
cacactggagtaatgggacttttctacctattggtggcagaaca |
63 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
38242412 |
cacactggtgtaatgggatttttctacctattggtggcagaaca |
38242369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 17453624 - 17453562
Alignment:
| Q |
16 |
agagcacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
78 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17453624 |
agagcatactggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
17453562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 17432734 - 17432676
Alignment:
| Q |
20 |
cacactggagtaatgggacttttctacctattggtggcagaacaactcccataccaaca |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
17432734 |
cacactggagtaatgggacttttctacctattggtggcagaagaacttccataccaaca |
17432676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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