View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12159_low_10 (Length: 331)
Name: NF12159_low_10
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12159_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 23 - 320
Target Start/End: Complemental strand, 49942373 - 49942076
Alignment:
| Q |
23 |
tgaggtgcttctctaacctaagttctttactttcatgatctatttgtaaccatggtaagattgtttttagcttcagtagtgggaaagtttatttgtggaa |
122 |
Q |
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| T |
49942373 |
tgaggtgcttctctaacctaagttctttactttcatgatctatttgtaaccatggtaagattgtttttagcttcagtagtgggaaagtttatttgtggaa |
49942274 |
T |
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| Q |
123 |
ttctaaaatgattggtaaataacacctgccatagcttttggcttaggtcgtggaaccttgtagatctcatgttacatcaactttcttcaaacagtgttat |
222 |
Q |
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| T |
49942273 |
ttctaaaatgattggtaaataacacctgccatagcttttggcttaggtcgtggaaccttgtagatctcatgttacatcaactttcttcaaacagtgttat |
49942174 |
T |
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| Q |
223 |
aattatcatggcatgagcatgacactacttgcccattattcttgataattgatattgcttcatctgtttgatatattgttttcttgtgccacaggttc |
320 |
Q |
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| T |
49942173 |
aattatcatggcatgagcatgacactacttgccagttattcttgataactgatattgcttcatctgtttgatatattgttttcttgtgctacaggttc |
49942076 |
T |
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