View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12159_low_11 (Length: 291)
Name: NF12159_low_11
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12159_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 9108774 - 9108496
Alignment:
| Q |
1 |
gaaaaagaaggcaaaaaacttcattgatgatgccattgcaacactatatatagaaacagagaaagttgaaaattaaaacagtggaaaattgtgaatcaag |
100 |
Q |
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| T |
9108774 |
gaaaaagaaggcaaaaaacttcattgatgatgccattgcaacactatatatagaaacagagaaagttgaaaattaaaacagtggaaaattgtgaatcaag |
9108675 |
T |
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| Q |
101 |
aagaagcaatgcaaagtgtgtatgttgttgaattggtggtgaaagggtgtggaagtatttaactatttataagattgaagggacgcgtggggcccaaaaa |
200 |
Q |
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| T |
9108674 |
aagaagcaatgcaaagtgtgtatgttgttgaattggtggtgaaagggtgtggaaatatttaactatttataagattggagggacgcgtggggcccaaaaa |
9108575 |
T |
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| Q |
201 |
taacgtggacagcttgagaaacaattatgccgacgttttattatatgaatgggtcagtcgttagatgtttccacaggtt |
279 |
Q |
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| T |
9108574 |
taacgtggacagcttgagaaacaattatgccgacgttttattatatgaatgggtcagtcgttagatgtttccataggtt |
9108496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 8755561 - 8755352
Alignment:
| Q |
1 |
gaaaaagaaggcaaaaaacttcattgatgatgccattgcaacactatatatagaaacagagaaagttgaaaattaaaacagtggaaaattgtgaatcaag |
100 |
Q |
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| T |
8755561 |
gaaaaagaaggcgaaaaacttcattgatgatgccattgcaaaattatatatggaaacagagaaaattgaaaattaaaacagtggaaaattgtgaatcaag |
8755462 |
T |
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| Q |
101 |
aagaagcaatgcaaagtgtgtatgttgttga---attggtggtgaaagggtgtggaagtatttaactatttataagattgaagggacgcgtggggcccaa |
197 |
Q |
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| T |
8755461 |
aagaagaaatgtaaattatgtatgtttttgaattatttgtggtgaaagtgtgtgggag--------tatttataagattggtgaaacgcgtggggcccac |
8755370 |
T |
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| Q |
198 |
aaataacgtggacagctt |
215 |
Q |
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| T |
8755369 |
aaataacgtggacagctt |
8755352 |
T |
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