View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12159_low_17 (Length: 232)

Name: NF12159_low_17

Description: NF12159

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12159_low_17

[»] chr3 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 198; E-Value: 1e-108

Query Start/End: Original strand, 18 - 215

Target Start/End: Original strand, 49065251 - 49065448

Alignment:

Q	18	gttttttcacttgcaactactgcaagagaaaattcttcagttcacaagcacttgggggacatcaaaatgctcacaagagagagaggtcaattgcaaaaag	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49065251	gttttttcacttgcaactactgcaagagaaaattcttcagttcacaagcacttgggggacatcaaaatgctcacaagagagagaggtcaattgcaaaaag	49065350	T

Q	118	aggacggaggacgatgttctcagcaacaggaacaacctcatttcttcataatcatcttcaccaccgttatgcaaatatggcatctctactaccactct	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49065351	aggacggaggacgatgttctcagcaacaggaacaacctcatttcttcataatcatcttcaccaccgttatgcaaatatggcatctctactaccactct	49065448	T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 44 - 122

Target Start/End: Complemental strand, 2867194 - 2867116

Alignment:

Q	44	agaaaattcttcagttcacaagcacttgggggacatcaaaatgctcacaagagagagaggtcaattgcaaaaagaggac	122	Q
		\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	2867194	agaaaattctatagctcacaagcattaggtggacaccaaaatgctcacaaaagagagagatcaatagcaaaaagaggac	2867116	T

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