View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12159_low_2 (Length: 685)

Name: NF12159_low_2
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12159_low_2
NF12159_low_2
[»] chr5 (23 HSPs)
chr5 (296-630)||(10870507-10870833)
chr5 (22-272)||(14416674-14416925)
chr5 (97-272)||(30655106-30655283)
chr5 (145-270)||(19615012-19615137)
chr5 (152-272)||(15160380-15160500)
chr5 (37-272)||(4376581-4376817)
chr5 (141-270)||(1503483-1503612)
chr5 (175-268)||(11507342-11507434)
chr5 (175-268)||(11514714-11514806)
chr5 (175-268)||(11522115-11522207)
chr5 (175-268)||(11529528-11529620)
chr5 (183-272)||(17012353-17012442)
chr5 (175-268)||(11499955-11500047)
chr5 (175-268)||(11536933-11537024)
chr5 (175-268)||(11543021-11543112)
chr5 (175-268)||(31068973-31069065)
chr5 (170-266)||(7410823-7410919)
chr5 (27-125)||(15160507-15160605)
chr5 (170-266)||(5079069-5079165)
chr5 (73-113)||(19614929-19614969)
chr5 (170-272)||(9354394-9354496)
chr5 (170-268)||(17037540-17037638)
chr5 (183-272)||(9333579-9333668)
[»] chr6 (25 HSPs)
chr6 (21-272)||(7913256-7913509)
chr6 (37-270)||(7601194-7601439)
chr6 (145-270)||(14003868-14003993)
chr6 (97-270)||(16722198-16722373)
chr6 (97-272)||(2671048-2671225)
chr6 (103-273)||(13144409-13144579)
chr6 (170-269)||(2668458-2668557)
chr6 (97-272)||(6346788-6346965)
chr6 (105-265)||(6331398-6331561)
chr6 (150-272)||(9236022-9236145)
chr6 (134-268)||(13141282-13141413)
chr6 (134-272)||(6331564-6331702)
chr6 (146-253)||(2567453-2567560)
chr6 (144-241)||(9974519-9974622)
chr6 (208-272)||(13144578-13144642)
chr6 (170-266)||(16734804-16734900)
chr6 (23-110)||(16722032-16722120)
chr6 (170-266)||(11936772-11936868)
chr6 (170-266)||(15361714-15361810)
chr6 (23-110)||(7601099-7601186)
chr6 (182-272)||(29667932-29668024)
chr6 (170-268)||(12591830-12591928)
chr6 (183-268)||(2941002-2941088)
chr6 (202-269)||(5673539-5673610)
chr6 (36-89)||(13144354-13144407)
[»] chr7 (11 HSPs)
chr7 (23-272)||(28312669-28312917)
chr7 (24-272)||(24731613-24731862)
chr7 (21-272)||(17710593-17710848)
chr7 (143-272)||(7711335-7711464)
chr7 (97-266)||(3364981-3365153)
chr7 (111-194)||(25035095-25035180)
chr7 (146-272)||(5838511-5838636)
chr7 (21-112)||(25035230-25035319)
chr7 (37-110)||(7711135-7711208)
chr7 (152-272)||(2048395-2048513)
chr7 (178-266)||(4685416-4685504)
[»] chr3 (13 HSPs)
chr3 (24-272)||(24993342-24993591)
chr3 (37-270)||(9638992-9639237)
chr3 (37-270)||(23363137-23363382)
chr3 (97-270)||(23358386-23358561)
chr3 (37-270)||(28698982-28699227)
chr3 (37-228)||(36084521-36084723)
chr3 (77-272)||(20388577-20388776)
chr3 (23-110)||(23363042-23363129)
chr3 (170-268)||(13845989-13846087)
chr3 (170-266)||(7407759-7407855)
chr3 (170-253)||(16457336-16457419)
chr3 (175-268)||(1627957-1628050)
chr3 (170-263)||(2550168-2550261)
[»] chr2 (11 HSPs)
chr2 (97-270)||(45404637-45404812)
chr2 (97-272)||(24846822-24847001)
chr2 (103-272)||(18814572-18814741)
chr2 (77-194)||(32265977-32266095)
chr2 (21-110)||(18814825-18814912)
chr2 (184-272)||(40084412-40084500)
chr2 (170-268)||(15513664-15513762)
chr2 (175-268)||(30267000-30267093)
chr2 (170-266)||(31342721-31342817)
chr2 (170-268)||(44920955-44921052)
chr2 (135-219)||(38701855-38701939)
[»] chr4 (12 HSPs)
chr4 (37-270)||(8573022-8573267)
chr4 (37-270)||(28461084-28461329)
chr4 (98-272)||(2549253-2549429)
chr4 (97-270)||(8575211-8575386)
chr4 (145-270)||(54186524-54186648)
chr4 (170-246)||(17525291-17525367)
chr4 (181-272)||(29422542-29422633)
chr4 (175-268)||(47066044-47066137)
chr4 (21-59)||(2549508-2549546)
chr4 (170-263)||(43600269-43600362)
chr4 (199-272)||(24559030-24559102)
chr4 (26-110)||(28461337-28461421)
[»] chr1 (6 HSPs)
chr1 (97-272)||(20427660-20427840)
chr1 (447-569)||(47694390-47694508)
chr1 (37-112)||(20427568-20427642)
chr1 (28-167)||(33153725-33153859)
chr1 (170-272)||(12189945-12190047)
chr1 (170-268)||(16222775-16222873)
[»] chr8 (15 HSPs)
chr8 (275-384)||(5001635-5001744)
chr8 (37-272)||(8833490-8833727)
chr8 (143-272)||(19371247-19371376)
chr8 (144-270)||(19341400-19341526)
chr8 (170-272)||(29553622-29553724)
chr8 (170-266)||(28249080-28249176)
chr8 (152-272)||(29386473-29386594)
chr8 (175-270)||(6403588-6403683)
chr8 (190-241)||(10564270-10564321)
chr8 (170-263)||(45356117-45356210)
chr8 (170-272)||(6801835-6801937)
chr8 (170-268)||(17634476-17634574)
chr8 (170-268)||(31347346-31347444)
chr8 (170-266)||(25638806-25638902)
chr8 (220-268)||(5528740-5528787)
[»] scaffold1005 (1 HSPs)
scaffold1005 (175-268)||(645-737)
[»] scaffold0576 (1 HSPs)
scaffold0576 (170-266)||(6698-6794)
[»] scaffold0726 (1 HSPs)
scaffold0726 (24-95)||(347-418)
[»] scaffold0554 (1 HSPs)
scaffold0554 (181-272)||(7285-7373)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 3e-96; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 296 - 630
Target Start/End: Original strand, 10870507 - 10870833
Alignment:
Q  296 ccaatgcctaatttgatacttctatatacctgaaacttaccatagatcacaaaacaaatcatgttctacatccaataccaaaagataaactacttatgct 395  Q
    ||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||    
T  10870507 ccaatgcctaatttgatacttctatatacctgaagtctatcatagatcacaaaacaaatcatgctctgcatccaataccaaaggataaactacttatgct 10870606  T
Q  396 aaaaatgtaattgccatcgaaacacataactgaagtgttcaaatatggtttttaaattaataacctgattgttaaccaccatttctctatatattcatgg 495  Q
     ||||||| |||| |||| |||| ||||||||||||||||||||| || | ||||        || |||||  |||||||||||||||||||||||||      
T  10870607 taaaatgttattgtcatctaaactcataactgaagtgttcaaataagggtgttaa--------ccggattgc-aaccaccatttctctatatattcatca 10870697  T
Q  496 cggtgaagtaataatagcatatctattcctaatccgcttaatatatttcatccaaatggctcttatcaaaattctatatctttttgcgattttaactgaa 595  Q
     |||||||||||||||||||||||||||||||||||||||||  |||| ||||||| | ||||||||||||||||| ||||||||| |||||||| ||||    
T  10870698 tggtgaagtaataatagcatatctattcctaatccgcttaatccattttatccaaacgactcttatcaaaattctaaatctttttgtgattttaagtgaa 10870797  T
Q  596 a-gggaatcaccaaccaggatcagatacaaatcctt 630  Q
    | ||||||||||||||||||||||||||||||||||    
T  10870798 aggggaatcaccaaccaggatcagatacaaatcctt 10870833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 22 - 272
Target Start/End: Complemental strand, 14416925 - 14416674
Alignment:
Q  22 tagtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacctaaactgttagctatagattggctacaaattagctacttaataagt 121  Q
    |||||||||| ||| |||||||||||||||||| ||||| ||| |||||||| ||||||  ||||||  |||||||||||||||||||||||||||||||    
T  14416925 tagtcttcactattcagtaacatttatgcaacaaaattt-gctacaattgcatctaaacgattagctgcagattggctacaaattagctacttaataagt 14416827  T
Q  122 aacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaa 219  Q
    ||||||| ||||||  |||||||||| |||||||||||||   |||||| |||| ||||||  |||||||||||| || |||||| ||||| ||||||||    
T  14416826 aacattttttaagtgttacaagtaatgctctcaagtgttaccaaaatcatttagtaacacgatctttacctaacatttttcaaatattacatgatctaaa 14416727  T
Q  220 tagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||    
T  14416726 tagtaacatttgtttctgatttagttacaaatttaaagtgttactaaatctca 14416674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 97 - 272
Target Start/End: Original strand, 30655106 - 30655283
Alignment:
Q  97 gctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaaca 194  Q
    ||||||||||| ||||  |||||||||||||| ||||||  ||||||||||||| |||||||||| |||||||| |||| ||||| ||||||||||||||    
T  30655106 gctacaaattacctacaaaataagtaacattttttaagtgttacaagtaatactttcaagtgttactgaaatcatttagtaacaccggctttacctaaca 30655205  T
Q  195 gttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
     || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30655206 tttatcaaatgttacaagatctaaatagtaacatttgtttttgatttagttacaattttgaagtgttactaaatctca 30655283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 19615012 - 19615137
Alignment:
Q  145 tactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggt 244  Q
    ||||||||| ||||| |||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  19615012 tactctcaaatgttactgaaatcatttagtaacatgggctttacctaacatttgtcaaatgttacaagatctaaatagtaacagttgtttttgatttagt 19615111  T
Q  245 tacaattttgaagtgttactaaatct 270  Q
    ||||||||||||||||||||||||||    
T  19615112 tacaattttgaagtgttactaaatct 19615137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 15160500 - 15160380
Alignment:
Q  152 aagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaatt 251  Q
    |||||||| |||||||| |||| |||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  15160500 aagtgttactgaaatcatttagtaacatgggctttacctaacatttatcaaatgttacaagatttaaatagtaacatttgtttttgatttatttacaatt 15160401  T
Q  252 ttgaagtgttactaaatctca 272  Q
    |||||||||||||||||||||    
T  15160400 ttgaagtgttactaaatctca 15160380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 37 - 272
Target Start/End: Complemental strand, 4376817 - 4376581
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgcacctaaactgtta-gctatagattggctacaaattagctacttaataagtaacatttgttaagt 135  Q
    |||||||||||||||||| ||| | |||||| ||||| ||||| || |  |||| ||||| ||| ||||||||||||  |||| |||||| || ||||||    
T  4376817 agtaacatttatgcaacaaaatct-gcttca-ttgcaactaaattggtctgctagagattagcttcaaattagctacaaaataggtaacaatttttaagt 4376720  T
Q  136 --tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtt 233  Q
      | | ||||| |||||||||| ||| | | | ||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |    
T  4376719 gttgcgagtaagactctcaagtattactaataccaattagtaacacggactttacctaacatttatcaaatgttacaagatctaaatagtaacatttggt 4376620  T
Q  234 tttgatttggttacaattttgaagtgttactaaatctca 272  Q
    |||||||| |||||| |||| ||||||||| ||||||||    
T  4376619 tttgatttagttacatttttcaagtgttacaaaatctca 4376581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 141 - 270
Target Start/End: Original strand, 1503483 - 1503612
Alignment:
Q  141 gtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatt 240  Q
    ||||||||||||||||||| |||||| | |||  ||||   |||||| |||| | | ||||| ||||||||||||||||||||||||||| |||||||||    
T  1503483 gtaatactctcaagtgttactgaaattatttattaacatcagctttatctaatactagtcaattgttacaagatctaaatagtaacatttatttttgatt 1503582  T
Q  241 tggttacaattttgaagtgttactaaatct 270  Q
    |  ||| |||||| ||||||||||||||||    
T  1503583 tatttataattttaaagtgttactaaatct 1503612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 11507434 - 11507342
Alignment:
Q  175 aacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||||||||||||||||||| || ||||| |||||| ||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  11507434 aacacgggctttacctaacatttatcaaaagttacatgatctaaatagtaacattt-ttttttatttagttacaatttttaagtgttactaaat 11507342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 11514806 - 11514714
Alignment:
Q  175 aacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||||||||||||||||||| || ||||| |||||| ||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  11514806 aacacgggctttacctaacatttatcaaaagttacatgatctaaatagtaacattt-ttttttatttagttacaatttttaagtgttactaaat 11514714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 11522207 - 11522115
Alignment:
Q  175 aacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||||||||||||||||||| || ||||| |||||| ||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  11522207 aacacgggctttacctaacatttatcaaaagttacatgatctaaatagtaacattt-ttttttatttagttacaatttttaagtgttactaaat 11522115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 11529620 - 11529528
Alignment:
Q  175 aacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||||||||||||||||||| || ||||| |||||| ||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  11529620 aacacgggctttacctaacatttatcaaaagttacatgatctaaatagtaacattt-ttttttatttagttacaatttttaagtgttactaaat 11529528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 17012442 - 17012353
Alignment:
Q  183 ctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| ||||| || |  |||||| ||||||||||||||||||||||    
T  17012442 ctttacctaatatttgtcaaatgttacaagatctaaatagtaacatttattttttatctaattacaaatttgaagtgttactaaatctca 17012353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 11500047 - 11499955
Alignment:
Q  175 aacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||||||||||||||| ||| || ||||| |||||| ||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  11500047 aacacgggctttacctgacatttatcaaaagttacatgatctaaatagtaacattt-ttttttatttagttacaatttttaagtgttactaaat 11499955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 11537024 - 11536933
Alignment:
Q  175 aacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    ||||| |||||||||||||| || ||||| |||||| ||||||||||||||||||  ||||| |||| ||||||||||| ||||||||||||||    
T  11537024 aacaccggctttacctaacatttatcaaaagttacatgatctaaatagtaacatt--ttttttatttagttacaatttttaagtgttactaaat 11536933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 11543112 - 11543021
Alignment:
Q  175 aacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||||||||||||| ||||| || ||||| |||||| ||||||||||||||||||  ||||| |||| ||||||||||| ||||||||||||||    
T  11543112 aacacgggctttacttaacatttatcaaaagttacatgatctaaatagtaacatt--ttttttatttagttacaatttttaagtgttactaaat 11543021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 31068973 - 31069065
Alignment:
Q  175 aacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||||||||||||||||||| ||||  |||||||| | || ||| ||||||||||| || ||||||| ||||||||||| ||||||||||||||    
T  31068973 aacacgggctttacctaacaattgttcaatgttactaaatttaattagtaacattt-ttcttgatttagttacaatttttaagtgttactaaat 31069065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 7410919 - 7410823
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    |||| |||||||||||||||||||| |||| ||| |||| | | || ||| ||||||||||| |||||||||| |||||||||||||| |||||||||    
T  7410919 ttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattt-tttttgatttagttacaattttgaaatgttactaa 7410823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 15160605 - 15160507
Alignment:
Q  27 ttcaccattgagtaacatttatgcaacataattttgcttcaattgcacctaaa-ctgttagctatagattggctacaaattagctacttaataagtaaca 125  Q
    ||||| ||| ||||||||||||| |||| ||||| ||| || ||||||||||| |||||||||| | ||| |||||||||| |||||||||| |||||||    
T  15160605 ttcactattcagtaacatttatgtaacaaaattt-gctacagttgcacctaaaactgttagctacaaattagctacaaattggctacttaatgagtaaca 15160507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 5079069 - 5079165
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    |||| |||||||||||||||||||| |||| ||| |||| | | || ||| ||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  5079069 ttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattt-ttcttgatttagttacaattttcaagtgttactaa 5079165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 19614929 - 19614969
Alignment:
Q  73 acctaaactgttagctatagattggctacaaattagctact 113  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  19614929 acctaaactgttagctatagattggctacaaatttgctact 19614969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 9354394 - 9354496
Alignment:
Q  170 ttagaaacacgggctttacctaacagttg-tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| |||| ||||||||||||||| ||| ||||||||||  | || ||| ||||||||||| || ||||||  ||||||||||| || |||||||||||    
T  9354394 ttagtaacatgggctttacctaacaattgctcaaatgttattaaatttaattagtaacattt-ttcttgattcagttacaattttcaattgttactaaat 9354492  T
Q  269 ctca 272  Q
    ||||    
T  9354493 ctca 9354496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 17037638 - 17037540
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| ||||| | |||||||||||| |||| |||||||||| | || ||| ||||||||||| || ||||||| ||||| ||||| ||||||||||||||    
T  17037638 ttagtaacactgactttacctaacaattgttcaaatgttactaaatttaattagtaacattt-ttcttgatttagttacgattttcaagtgttactaaat 17037540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 9333579 - 9333668
Alignment:
Q  183 ctttacctaacagttg-tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    |||||||||||| ||| ||||||||||| | || ||| ||||||||||| || ||||||| ||||||||||| || |||||| ||||||||    
T  9333579 ctttacctaacaattgctcaaatgttactaaatttaattagtaacattt-ttcttgattttgttacaattttcaattgttacaaaatctca 9333668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 9e-78; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 21 - 272
Target Start/End: Original strand, 7913256 - 7913509
Alignment:
Q  21 ctagtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacctaaact-gttagctatagattggctacaaattagctacttaataa 119  Q
    |||||| |||| ||| |||||||||||||||||| ||||| ||| |||||||||||||| | |||||||||| |||||||||||||||||||||||||||    
T  7913256 ctagtcatcactattcagtaacatttatgcaacaaaattt-gctacaattgcacctaaaattgttagctataaattggctacaaattagctacttaataa 7913354  T
Q  120 gtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatcta 217  Q
    |||||| || ||||||  ||||||||||||| |||||||||| |||||||| |||| ||||| | |||||||||| | || |||||||||||||||||||    
T  7913355 gtaacactttttaagtgttacaagtaatactttcaagtgttattgaaatcatttagtaacacagactttacctaatatttctcaaatgttacaagatcta 7913454  T
Q  218 aatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7913455 aagagtaacatttgtttttgatttagttacaattttgaagtgttactaaatctca 7913509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 7601194 - 7601439
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgca-cctaaactgttagctatagattggctacaaatt-----------agctacttaataagtaac 124  Q
    ||||||||||||| |||| |||||  || |||||||| |||||||||||||||||||||||||||||||||           ||||||| ||| ||||||    
T  7601194 agtaacatttatgtaacagaattt--ctgcaattgcaacctaaactgttagctatagattggctacaaatttgctactaattagctactaaatgagtaac 7601291  T
Q  125 atttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatag 222  Q
    | || ||||||  | |||||  ||||||||| ||||| |||||||| |||| ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  7601292 aatttttaagtgttgcaagttttactctcaaatgttactgaaatcatttagtaacacggactttacctaacatttgtcaaatgttacaagatctaaatag 7601391  T
Q  223 taacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||    
T  7601392 taacagttgtttttgatttaattacaattttgaagtgttactaaatct 7601439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 14003993 - 14003868
Alignment:
Q  145 tactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggt 244  Q
    ||||||||| ||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  14003993 tactctcaaatgttactgaaatcatttagtaacacgggctttacctaacatttgtcaaatgttacaagatctaaatagtaacagttgtttttgatttagt 14003894  T
Q  245 tacaattttgaagtgttactaaatct 270  Q
    ||||||||||||||||||||||||||    
T  14003893 tacaattttgaagtgttactaaatct 14003868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 16722198 - 16722373
Alignment:
Q  97 gctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaaca 194  Q
    ||||| ||||||||||| ||| ||||||| || ||||||  | |||||  ||||||||| ||||| |||||||| |||| |||||||| ||||||||| |    
T  16722198 gctactaattagctactaaatgagtaacaatttttaagtgttgcaagttttactctcaaatgttactgaaatcatttagtaacacgggttttacctaata 16722297  T
Q  195 gttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
     |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  16722298 tttgtcaaatgttacaagatctaaatagtaacggttgtttttgatttagttacaattttgaagtgttactaaatct 16722373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 97 - 272
Target Start/End: Complemental strand, 2671225 - 2671048
Alignment:
Q  97 gctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaaca 194  Q
    ||||| ||||||||||| ||| ||||||| || ||||||  | || ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||    
T  2671225 gctactaattagctactaaatgagtaacaatttttaagtgttgcatgtaatactctcaagtgttactgaaatcatttagtaacacgggctttacctaaca 2671126  T
Q  195 gttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
     ||||||||| ||| ||||||||||||||||||||||||||| |||| |||||| ||| ||| ||||| |||||||||    
T  2671125 tttgtcaaatattataagatctaaatagtaacatttgtttttaatttagttacagtttagaaatgttattaaatctca 2671048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 103 - 273
Target Start/End: Original strand, 13144409 - 13144579
Alignment:
Q  103 aattagctacttaataagtaacatttgttaagtta-caagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtca 201  Q
    ||||||||||||||| ||||||  || ||| |||  ||| |||||||||||||||||| | |||| | |||| ||||||| |||||||||||| ||||||    
T  13144409 aattagctacttaatgagtaaccgtttttatgttttcaaataatactctcaagtgttacttaaattatttagtaacacgg-ctttacctaacatttgtca 13144507  T
Q  202 aatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctcac 273  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  13144508 aatgttacaagacctaaatagtaatatttgtttttgatttagttacaattttgaagtgttactaaatttcac 13144579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 2668458 - 2668557
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatc 269  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  2668458 ttagtaacacgggctttacctaacatttgtcaaatgttacaagatctaaatagtaacagttgtttttgatttagttacaattttgaagtgttactaaatc 2668557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 97 - 272
Target Start/End: Original strand, 6346788 - 6346965
Alignment:
Q  97 gctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaaca 194  Q
    ||||||| ||||||||||  |||||||||||| ||| ||  |||| ||||||| ||||||||||| | |||||| |||| ||||  ||||||||||||||    
T  6346788 gctacaagttagctacttggtaagtaacattttttaggtgttacatgtaataccctcaagtgttacttaaatcatttagtaacataggctttacctaaca 6346887  T
Q  195 gttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
     || ||||||||||||| || ||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||    
T  6346888 tttatcaaatgttacaaaatttaaatagtaacatttatttttgatttagttacaattttaatgtgttactaaatctca 6346965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 105 - 265
Target Start/End: Original strand, 6331398 - 6331561
Alignment:
Q  105 ttagctacttaataagtaacatttgttaag---ttacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtca 201  Q
    |||||| |||| |||||||||||| || ||   ||||| |||||||  |||||||||| |||||||| | || |||||||| ||||||||||| ||||||    
T  6331398 ttagctgcttagtaagtaacatttttttaggtgttacatgtaataccttcaagtgttactgaaatcattaagtaacacgggatttacctaacaattgtca 6331497  T
Q  202 aatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttacta 265  Q
     ||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||| ||||||    
T  6331498 tatgttacaaaatctaaatagtaacatttgttttttatttagttacacttttgaagtattacta 6331561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 9236145 - 9236022
Alignment:
Q  150 tcaagtgttagtgaaatcaattagaaacacgggcttt-acctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttaca 248  Q
    |||||||||  |||||||| |||| |||||||| ||| |||||||| |||||||||||||||| || |||||||||| ||||||||||||||| |||||     
T  9236145 tcaagtgttgctgaaatcatttagtaacacgggtttttacctaacatttgtcaaatgttacaaaatttaaatagtaatatttgtttttgatttagttacg 9236046  T
Q  249 attttgaagtgttactaaatctca 272  Q
    ||||||||||||||||||||||||    
T  9236045 attttgaagtgttactaaatctca 9236022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 13141413 - 13141282
Alignment:
Q  134 gttacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtt 233  Q
    ||||||||||||||||| |||||||| |||||||| |||| ||||||||||  |||||||| || ||||||||||| |||||||||||||||||||| ||    
T  13141413 gttacaagtaatactcttaagtgttactgaaatcatttagtaacacgggct--acctaacatttatcaaatgttacgagatctaaatagtaacattt-tt 13141317  T
Q  234 tttgatttggttacaattttgaagtgttactaaat 268  Q
    ||| |||| ||||||| ||||||||||||| ||||    
T  13141316 ttttatttagttacaactttgaagtgttacaaaat 13141282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 6331564 - 6331702
Alignment:
Q  134 gttacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtt 233  Q
    |||||| ||||||| || |||||||| |||||||| || | ||||| || ||||||||| | || |||||||||| |||||||||||||| |||||||||    
T  6331564 gttacatgtaatacccttaagtgttactgaaatcattttgtaacacaggttttacctaatatttctcaaatgttataagatctaaatagtgacatttgtt 6331663  T
Q  234 tttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||| |||| ||||||| ||| ||||||||||||||||||    
T  6331664 ttttatttagttacaactttaaagtgttactaaatctca 6331702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 2567560 - 2567453
Alignment:
Q  146 actctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggtt 245  Q
    ||||||||| |||| | ||| || |||| ||||||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |||    
T  2567560 actctcaagggttactaaaaccatttagtaacacggactttaccaaacatttatcaaatgttacaagatctaaatagtaacatttgtttttgatttagtt 2567461  T
Q  246 acaatttt 253  Q
    ||||||||    
T  2567460 acaatttt 2567453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 9974519 - 9974622
Alignment:
Q  144 atactctcaagtgttagtgaaatcaattagaaacacggg------ctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttg 237  Q
    |||||||||| ||||| |||||||| |||| ||||||||      |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  9974519 atactctcaaatgttactgaaatcatttagtaacacgggttttggctttacctaacatttgtcaaatgatacaagatctaaatagtaatatttgtttttg 9974618  T
Q  238 attt 241  Q
    ||||    
T  9974619 attt 9974622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 13144578 - 13144642
Alignment:
Q  208 acaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    |||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  13144578 acaagacctaaatagtaacatttgtttttgatttagttacaatgttgaagtgttactaaatctca 13144642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 16734900 - 16734804
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    |||| |||||||||||||||||||| |||| |||||||| | | || ||| ||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  16734900 ttagtaacacgggctttacctaacaattgttcaaatgttgctaaatttaattagtaacattt-ttcttgatttagttacaattttcaagtgttactaa 16734804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 16722032 - 16722120
Alignment:
Q  23 agtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacct-aaactgttagctatagattggctacaaattagct 110  Q
    ||||||||| ||| ||||||||||||||||||||||||| |  ||||| ||  | ||||||||||||| ||||||||||| ||||||||    
T  16722032 agtcttcactattcagtaacatttatgcaacataatttttcagcaattccaattaaaactgttagctacagattggctaccaattagct 16722120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 11936772 - 11936868
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    |||| ||||||||||||| |||||| |||| ||| |||| | | || ||| ||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  11936772 ttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacattt-ttcttgatttagttacaattttcaagtgttactaa 11936868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 15361810 - 15361714
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    |||| ||||| |||||||||||||| |||| ||| |||| | | || ||| ||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  15361810 ttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattt-ttcttgatttagttacaatttttaagtgttactaa 15361714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 7601099 - 7601186
Alignment:
Q  23 agtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacct-aaactgttagctatagattggctacaaattagct 110  Q
    ||||||||| ||| |||||||||||||||||| |||||| || ||||| ||  | ||| ||||||||| ||||||||||| ||||||||    
T  7601099 agtcttcactattcagtaacatttatgcaacagaatttt-ctgcaattccaattaaaattgttagctacagattggctactaattagct 7601186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 29667932 - 29668024
Alignment:
Q  182 gctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgt-ttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||||||||||||| |||| |||||||||| | || ||| ||||||||||| | ||||||||| ||||||||||| || |||||| | ||||||    
T  29667932 gctttacctaacaattgttcaaatgttactaaatttaattagtaacatttttcttttgatttcgttacaattttcaattgttacaagatctca 29668024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 12591928 - 12591830
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| |||||||||||||||||||| |||| | |  ||||| | || ||| || |||||||| || ||||||| ||||||||||| ||||||||||||||    
T  12591928 ttagtaacacgggctttacctaacaattgttcgagcgttactaaatttaattactaacattt-ttcttgatttagttacaattttcaagtgttactaaat 12591830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 2941088 - 2941002
Alignment:
Q  183 ctttacctaacagttg-tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||||||||||| ||| ||||||||||| | |  ||| ||||||||| | |||||||||| ||||||||||| || |||| ||||||    
T  2941088 ctttacctaacatttgctcaaatgttactaaacataattagtaacatctttttttgattttgttacaatttttaaatgttcctaaat 2941002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 5673539 - 5673610
Alignment:
Q  202 aatgttacaagatctaaatagtaacatttgtttttgatttg----gttacaattttgaagtgttactaaatc 269  Q
    |||||||||| ||||||||||||| |||||||||| ||||     ||||||||||| || ||||||||||||    
T  5673539 aatgttacaaaatctaaatagtaaaatttgttttttatttatttagttacaattttaaactgttactaaatc 5673610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 13144354 - 13144407
Alignment:
Q  36 gagtaacatttatgcaacataattttgcttcaattgcaccta-aactgttagcta 89  Q
    |||||||||||||||||||||| |||||| ||||| |||||| ||||||||||||    
T  13144354 gagtaacatttatgcaacataa-tttgctgcaatttcacctagaactgttagcta 13144407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 9e-75; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 23 - 272
Target Start/End: Complemental strand, 28312917 - 28312669
Alignment:
Q  23 agtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacctaaa-ctgttagctatagattggctacaaattagctacttaataagt 121  Q
    ||||||||||||| ||||| |||||||||||| ||||| ||| ||||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||    
T  28312917 agtcttcaccattcagtaatatttatgcaacaaaattt-gctacaattgctcctaaaactgttagctatagatttgctacaaattagctacttagtaagt 28312819  T
Q  122 aacatttgttaagttacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaata 221  Q
    |||||||     ||||||||||| |||| ||||||||| |||||||| |||| |||||||||||||||||||| |||| |||||||||||||||||||||    
T  28312818 aacattttaagcgttacaagtaa-actcacaagtgttactgaaatcatttagtaacacgggctttacctaacatttgtgaaatgttacaagatctaaata 28312720  T
Q  222 gtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  28312719 gtaacatttgtttttgatttagttgcaattttgaattgttactaaatctca 28312669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 24731613 - 24731862
Alignment:
Q  24 gtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacctaaactgttagctatagattggctacaaattagctacttaataagtaa 123  Q
    |||||||||||| || ||||||||||||||| ||||| | | ||||||| |  ||||||||||||||||||| ||||||||||||||||||||||| |||    
T  24731613 gtcttcaccattcagaaacatttatgcaacaaaattt-gatacaattgctctaaaactgttagctatagatttgctacaaattagctacttaataattaa 24731711  T
Q  124 catttgttaag--ttacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaata 221  Q
    ||||| |||||  ||||||| ||||||| ||||||||| |||||||| |||| |||| ||| ||||||||||| || |||||||||||||||||||||||    
T  24731712 cattttttaagccttacaaggaatactcacaagtgttactgaaatcatttagtaacatgggttttacctaacatttatcaaatgttacaagatctaaata 24731811  T
Q  222 gtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||||    
T  24731812 gtaacatttatttttgatttaattacaattttgaagtgttactaaatctca 24731862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 17710848 - 17710593
Alignment:
Q  21 ctagtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacctaaactgttagctatagattggctacaaattagctac---ttaat 117  Q
    ||||||||||| ||| ||||||||||||||||   ||||| ||| || ||||||||||||||||||||| ||||||||| ||| ||||||||   |||||    
T  17710848 ctagtcttcactattcagtaacatttatgcaatgaaattt-gctacagttgcacctaaactgttagctacagattggcttcaagttagctacaaattaat 17710750  T
Q  118 aagtaacatttgttaagtt--acaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatc 215  Q
    ||||||||||| ||||||   |||| |||||||||||||||||| ||||||   |||| ||||| || ||||||||||| |||||| |||||||||||||    
T  17710749 aagtaacattttttaagtgtaacaattaatactctcaagtgttactgaaatgttttagtaacacaggatttacctaacatttgtcacatgttacaagatc 17710650  T
Q  216 taaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||||||||||||||||||||| ||||  || ||||||||| ||||||||||||||||    
T  17710649 taaatagtaacatttgtttttaatttaattgcaattttgacgtgttactaaatctca 17710593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 143 - 272
Target Start/End: Original strand, 7711335 - 7711464
Alignment:
Q  143 aatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttg 242  Q
    ||||||||||||||||| |||||||| |||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||     
T  7711335 aatactctcaagtgttactgaaatcatttagtaacacgggctttacctaacattcatcaaatgttacaagatctaaatagtaacatttgtttttgattta 7711434  T
Q  243 gttacaattttgaagtgttactaaatctca 272  Q
    |||||||||| |||||||||||||||||||    
T  7711435 gttacaatttagaagtgttactaaatctca 7711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 97 - 266
Target Start/End: Complemental strand, 3365153 - 3364981
Alignment:
Q  97 gctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacac-gggctttacctaac 193  Q
    ||||| ||||||||||| ||| ||||||| || ||||||  | |||||  ||||||||| ||||| | |||||| |||| ||||| ||||||||||||||    
T  3365153 gctactaattagctactaaatgagtaacaatttttaagtgttgcaagttttactctcaaatgttactaaaatcatttagtaacaccgggctttacctaac 3365054  T
Q  194 agttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  3365053 atttgtcaaatgttacaagatctaaatagtaacaattgtttttgatttagttacaattttaaagtgttactaa 3364981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 25035095 - 25035180
Alignment:
Q  111 acttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaaca 194  Q
    |||||||||||||||||  ||||||  |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  25035095 acttaataagtaacattctttaagtgttacaagtaatactctcaagtgttattgaaatcaattagtaacacgggctttacctaaca 25035180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 5838636 - 5838511
Alignment:
Q  146 actctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggtt 245  Q
    ||||||||| |||| | |||||| |||| || ||||| ||||||||||| || |||||||||||||||| || ||||||||| |||||| | |||| |||    
T  5838636 actctcaagggttactaaaatcatttagtaagacgggatttacctaacatttatcaaatgttacaagatttatatagtaaca-ttgtttattatttagtt 5838538  T
Q  246 acaattttgaagtgttactaaatctca 272  Q
    | |||||| |||| |||||||||||||    
T  5838537 aaaattttcaagtattactaaatctca 5838511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 25035319 - 25035230
Alignment:
Q  21 ctagtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacctaaactgttagctatagattggctacaaattagctac 112  Q
    ||||| ||||| ||| ||||||||||||||||||||| |||||| |||||||||||  ||||||||||| ||||||| || |||||||||||    
T  25035319 ctagttttcactattcagtaacatttatgcaacataa-tttgctacaattgcacct-cactgttagctacagattggatataaattagctac 25035230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 7711135 - 7711208
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgca-cctaaactgttagctatagattggctacaaattagct 110  Q
    |||||||||||||||||||||||| | | ||| | || || ||| ||||||||||||||||||||||||||||||    
T  7711135 agtaacatttatgcaacataattt-gttgcaaatccaaccaaaattgttagctatagattggctacaaattagct 7711208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 2048395 - 2048513
Alignment:
Q  152 aagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaatt 251  Q
    |||||||| |||||||| |||| || | || |||||||||||| |  ||||||||||| | | |||||||||||||||  ||||| ||||  ||||| ||    
T  2048395 aagtgttactgaaatcatttagtaatatggactttacctaacattaatcaaatgttaccaaacctaaatagtaacatt--ttttttatttacttacattt 2048492  T
Q  252 ttgaagtgttactaaatctca 272  Q
    || || |||||| ||||||||    
T  2048493 tttaaatgttacaaaatctca 2048513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 4685416 - 4685504
Alignment:
Q  178 acgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    ||||||||||||||||| |||| ||| |||| | | || ||| || |||||||| || ||||||| ||||||||||| ||||||||||||    
T  4685416 acgggctttacctaacaattgttcaagtgttgctaaatttaattactaacattt-ttcttgatttagttacaattttcaagtgttactaa 4685504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 24 - 272
Target Start/End: Complemental strand, 24993591 - 24993342
Alignment:
Q  24 gtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacctaaa-ctgttagctatagattggctacaaattagctacttaataagta 122  Q
    |||||||| ||| |||||||||||||||||| ||||| ||| ||||||| |||||| | |||||||||||||| ||||||||||||||||||||||||||    
T  24993591 gtcttcactattaagtaacatttatgcaacaaaattt-gctacaattgctcctaaaacagttagctatagatttgctacaaattagctacttaataagta 24993493  T
Q  123 acatttgttaag--ttacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaat 220  Q
    |||||| |||||  ||||| ||| || || ||||||||| |||||||| |||  ||||| || ||||||||||| || ||||||||||||||||||||||    
T  24993492 acattttttaagcattaca-gtattagtcacaagtgttactgaaatcacttaataacacaggttttacctaacatttttcaaatgttacaagatctaaat 24993394  T
Q  221 agtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||||||    
T  24993393 agtaacgtttgttttttatttagttacaattttgaagtgttactaaatctca 24993342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 37 - 270
Target Start/End: Complemental strand, 9639237 - 9638992
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgca-cctaaactgttagctatagattggctacaaatt-----------agctacttaataagtaac 124  Q
    ||||||||||||| |||| |||||  || |||||||| |||||||||||||||||||||||||||||||||           ||||||| ||| ||||||    
T  9639237 agtaacatttatgtaacagaattt--ctgcaattgcaacctaaactgttagctatagattggctacaaatttgctactaattagctactaaatgagtaac 9639140  T
Q  125 atttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatag 222  Q
    | || ||||||  | |||||  ||||||||| ||||| |||||||| |||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  9639139 aatttttaagtgttgcaagttttactctcaaatgttactgaaatcatttagtaacacgggctttacataacatttgtcaaatgttacaagatctaaatag 9639040  T
Q  223 taacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||    
T  9639039 taacaattgtttttgatttaattacaattttgaagtgttactaaatct 9638992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 23363137 - 23363382
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgca-cctaaactgttagctatagattggctacaaatt-----------agctacttaataagtaac 124  Q
    ||||||||||||| |||| |||||  || |||||||| |||||| ||||||||||||||||||||||||||           ||||||| ||| ||||||    
T  23363137 agtaacatttatgtaacagaattt--ctgcaattgcaacctaaaatgttagctatagattggctacaaatttgctactaattagctactaaatgagtaac 23363234  T
Q  125 atttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatag 222  Q
    | || ||||||  | |||||  || |||||| ||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  23363235 aatttttaagtgttgcaagttttattctcaaatgttactgaaatcatttagtaacacgggctttacctaacatttgtcaaatgttacaagatctaaatag 23363334  T
Q  223 taacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  23363335 taacagttgtttttgatttagttacaattttgaagtgttactaaatct 23363382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 23358386 - 23358561
Alignment:
Q  97 gctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaaca 194  Q
    ||||| ||||||||||| ||| ||||||| || ||||||  | |||||  || |||||| ||||| |||||||| |||| ||||||||||||||||||||    
T  23358386 gctactaattagctactaaatgagtaacaatttttaagtgttgcaagttttattctcaaatgttactgaaatcatttagtaacacgggctttacctaaca 23358485  T
Q  195 gttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
     |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  23358486 tttgtcaaatgttacaagatctaaatagtaacagttgtttttgatttagttacaattttgaagtgttactaaatct 23358561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 28698982 - 28699227
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgca-cctaaactgttagctatagattggctacaaatt-----------agctacttaataagtaac 124  Q
    ||||||||||||| |||| |||||  || |||||||| |||||||||||||||||||||||||||||||||           ||||||| ||| ||||||    
T  28698982 agtaacatttatgtaacagaattt--ctgcaattgcaacctaaactgttagctatagattggctacaaatttgctactaattagctactaaatgagtaac 28699079  T
Q  125 atttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatag 222  Q
    | || ||| ||  | |||||  ||||||||| ||||| |||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||    
T  28699080 aatttttaggtgctgcaagttttactctcaaatgttactgaaatcatttagtaacacaggctttacctaacatttgtcaaatgttacaagatctaaatag 28699179  T
Q  223 taacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
    ||||| ||||||||||||| |||||||||||||||||||| |||||||    
T  28699180 taacagttgtttttgatttagttacaattttgaagtgttattaaatct 28699227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 36084723 - 36084521
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgcacctaaactgttagctatagattggctacaaattagctact----------taataagtaacat 126  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||           |||||||||||||    
T  36084723 agtaacatttatgcaaca-atttttgctacaattgcacctaaactgttagctatagattggctgcaagttagctacagattagctactaataagtaacat 36084625  T
Q  127 ttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagta 224  Q
    || ||||||  ||||||| ||||||| |||||||| |||||||| |||| ||||  |||||||||||||| |||||||||||||| ||||||||||||||    
T  36084624 tttttaagtgttacaagtgatactctaaagtgttactgaaatcatttagtaacataggctttacctaacatttgtcaaatgttacgagatctaaatagta 36084525  T
Q  225 acat 228  Q
    ||||    
T  36084524 acat 36084521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 77 - 272
Target Start/End: Original strand, 20388577 - 20388776
Alignment:
Q  77 aaactgttagctatagattggctacaaattagctacttaataagtaacatttgttaagttacaagtaatactctcaagtgttagtgaaatcaattagaaa 176  Q
    |||||||| ||| ||||||| |||||||||||||||| |||| ||||| ||||    |||| || ||| |||||||||||||| |||||| | || | ||    
T  20388577 aaactgttggctgtagattgactacaaattagctactgaatatgtaacttttgaagtgttataaataaaactctcaagtgttactgaaattatttggtaa 20388676  T
Q  177 cacgggctttacctaacagttgtcaaatgt---tacaagatctaaatagtaaca-tttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    || || ||||||| || | || |||||| |   ||| | ||||||||||||||| ||| ||||  ||||  ||||| |||| |||||||||||| |||||    
T  20388677 catggcctttaccaaatatttatcaaatattaatactaaatctaaatagtaacagttttttttatatttacttacatttttcaagtgttactaagtctca 20388776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 23363042 - 23363129
Alignment:
Q  23 agtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacct-aaactgttagctatagattggctacaaattagct 110  Q
    ||||||||| ||| |||||||||||||||||| |||||| || ||||| ||  | ||||||||||||| ||||||||||| ||||||||    
T  23363042 agtcttcactattcagtaacatttatgcaacagaatttt-ctgcaattccaattaaaactgttagctacagattggctactaattagct 23363129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 13846087 - 13845989
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| |||||||||||||||||||| |||| ||| |||| | | || ||| ||||||||||| || ||||||| ||||||||||| ||||||| ||||||    
T  13846087 ttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattt-ttcttgatttagttacaattttcaagtgttgctaaat 13845989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 7407759 - 7407855
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    |||| |||||||||||||||||||| |||| ||| |||| | | || ||| |||||| |||| || ||||||| ||||||||||| ||||||||||||    
T  7407759 ttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaatattt-ttcttgatttagttacaattttcaagtgttactaa 7407855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 16457336 - 16457419
Alignment:
Q  170 ttagaaacacgggctttacctaacagttg-tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaatttt 253  Q
    |||| |||||| ||||||||||||| ||| ||||||||||| | || ||| ||||||||||| || ||||||| |||||||||||    
T  16457336 ttagtaacacgagctttacctaacaattgctcaaatgttactaaatttaattagtaacattt-ttcttgatttagttacaatttt 16457419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 1627957 - 1628050
Alignment:
Q  175 aacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    ||||||| |||||| ||||| |||| ||| |||||| | || ||| |||||| |||| || ||||||| ||||||||||| ||||||||||||||    
T  1627957 aacacggactttacttaacaattgttcaagtgttactaaatttaattagtaatattt-ttcttgatttagttacaattttcaagtgttactaaat 1628050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 2550261 - 2550168
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttac 263  Q
    |||| ||||| |||||||||||||| |||| ||| |||| | | || ||| ||||||||||| || ||||||| ||||||||||| |||||||||    
T  2550261 ttagtaacacaggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattt-ttcttgatttagttacaattttcaagtgttac 2550168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 45404637 - 45404812
Alignment:
Q  97 gctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaaca 194  Q
    ||||||||||||||||| ||| ||||||| || ||||||  | |||||  ||||||||| ||||| |||||||| |||| ||||||||||||||||||||    
T  45404637 gctacaaattagctactaaatgagtaacaatttttaagtgttgcaagttttactctcaaatgttactgaaatcatttagtaacacgggctttacctaaca 45404736  T
Q  195 gttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
     |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  45404737 tttgtcaaatgttacaagatctaaatagtaacagttgtttttgatttagttacaattttgaagtgttactaaatct 45404812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 97 - 272
Target Start/End: Original strand, 24846822 - 24847001
Alignment:
Q  97 gctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaa--gtgttagtgaaatcaattagaaacacgggctttacctaa 192  Q
    ||||||||||||||||||||| |||||||  | ||| ||  |||||  |||||||||||  |||||| |||||||| |||| |||||||| |||||||||    
T  24846822 gctacaaattagctacttaatgagtaacagatcttatgtgttacaaaaaatactctcaaaagtgttattgaaatcatttagtaacacgggatttacctaa 24846921  T
Q  193 cagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    || ||||||||||||  ||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  24846922 catttgtcaaatgttgtaagatataaatagtaacatttgtttttgatttagttacaattttgaaatgttacaaaatctca 24847001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 103 - 272
Target Start/End: Complemental strand, 18814741 - 18814572
Alignment:
Q  103 aattagctacttaataagtaacatttgttaa--gttacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtc 200  Q
    ||||||||||| ||| ||||||| || ||||  ||  ||||||| |||||||||| ||| |||||||| |||| ||||||||    |   |||| |||||    
T  18814741 aattagctactaaatgagtaacaatttttaaatgtcgcaagtaacactctcaagttttactgaaatcatttagtaacacgggaaaaaa--aacatttgtc 18814644  T
Q  201 aaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||  ||||||||| ||||||||    
T  18814643 aaatgttacaagatctaaatagtaacattagtttttgattcagttacaatttataagtgttaccaaatctca 18814572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 32266095 - 32265977
Alignment:
Q  77 aaactgttagctatagattggctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattaga 174  Q
    ||||| |||||||||||||||||||| |||||||| |||| ||| ||||||| ||||||  ||||| |||||||||||||||||| |||||||| ||||     
T  32266095 aaacttttagctatagattggctacagattagctagttaaaaag-aacattttttaagtgttacaaataatactctcaagtgttactgaaatcatttagt 32265997  T
Q  175 aacacgggctttacctaaca 194  Q
    || | || ||||||||||||    
T  32265996 aatatggtctttacctaaca 32265977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 18814912 - 18814825
Alignment:
Q  21 ctagtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacctaaactgttagctatagattggctacaaattagct 110  Q
    ||||||||||| |||||||||||||||||||||| || |||||| |||||| |||| |||  ||||||||||||||||||||||||||||    
T  18814912 ctagtcttcactattgagtaacatttatgcaaca-aaatttgctgcaattgtacct-aacacttagctatagattggctacaaattagct 18814825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 40084412 - 40084500
Alignment:
Q  184 tttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||||||||| | || ||||||||||||||| ||||||| |||||  | ||||| |||| |||| | |||| ||||||||||||||||||    
T  40084412 tttacctaatatttatcaaatgttacaagaactaaataataacacctattttttatttagttatattttttaagtgttactaaatctca 40084500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 15513762 - 15513664
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| |||||| ||||||||||||| |||| ||| |||||||| || ||| ||||||||||| || |||||||  |||||||||| || |||||||||||    
T  15513762 ttagtaacacgagctttacctaacaattgttcaagtgttacaaaatttaactagtaacattt-ttcttgatttacttacaatttttaattgttactaaat 15513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 30267093 - 30267000
Alignment:
Q  175 aacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||||||||||||||||||| |||| ||  |||||| | || ||| || |||||||| || ||||||| ||||||||||| ||||||||||||||    
T  30267093 aacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacattt-ttcttgatttagttacaattttcaagtgttactaaat 30267000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 31342721 - 31342817
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    |||| ||||||||||||| |||||| |||| ||| |||| | | || ||| ||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  31342721 ttagtaacacgggctttatctaacaattgttcaagtgttgctaaatttaattagtaacattt-ttcttgatttagttacaattttcaagtgttactaa 31342817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 44921052 - 44920955
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgtcaaa-tgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| |||||| ||||||||||||| ||||  |  |||||| | || ||| |||||||||||  ||||||||| ||||||||||| ||||||||||||||    
T  44921052 ttagtaacacgagctttacctaacaattgtttaggtgttactaaatttaattagtaacattt--ttttgatttagttacaattttcaagtgttactaaat 44920955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 38701855 - 38701939
Alignment:
Q  135 ttacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaa 219  Q
    |||| ||||||||||||||| |||| | || ||| |||| ||||| || |||||| |||| ||  ||||| ||||||||||||||    
T  38701855 ttactagtaatactctcaagggttactaaagtcatttagtaacaccggttttaccaaacatttcccaaatattacaagatctaaa 38701939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 37 - 270
Target Start/End: Original strand, 8573022 - 8573267
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgca-cctaaactgttagctatagattggctacaaatt-----------agctacttaataagtaac 124  Q
    ||||||||||||| |||| |||||  || |||||||| |||||||||||||||||||||||||||||||||           ||||||| ||| ||||||    
T  8573022 agtaacatttatgtaacagaattt--ctgcaattgcaacctaaactgttagctatagattggctacaaatttgctactaattagctactaaatgagtaac 8573119  T
Q  125 atttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatag 222  Q
    | || ||| ||  | |||||  ||||||||| ||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  8573120 aatttttaggtgctgcaagttttactctcaaatgttactgaaatcatttagtaacacgggctttacctaacatttgtcaaatgttacaagatctaaatag 8573219  T
Q  223 taacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  8573220 taacagttgtttttgatttagttacaattttgaagtgttactaaatct 8573267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 37 - 270
Target Start/End: Complemental strand, 28461329 - 28461084
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgca-cctaaactgttagctatagattggctacaaatt-----------agctacttaataagtaac 124  Q
    ||||||||||||| |||| |||||  || |||||||| |||||||||||||||||||||||||||||||||           ||||||| ||| ||||||    
T  28461329 agtaacatttatgtaacagaattt--ctgcaattgcaacctaaactgttagctatagattggctacaaatttgctactaattagctactaaatgagtaac 28461232  T
Q  125 atttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatag 222  Q
    | || ||||||  | |||||  ||||||||| ||||| |||||||| |||| ||||||| |||||||| ||| |||||||||||||||||||||||||||    
T  28461231 aatttttaagtgttgcaagttttactctcaaatgttactgaaatcatttagtaacacggactttacctgacatttgtcaaatgttacaagatctaaatag 28461132  T
Q  223 taacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  28461131 taacagttgtttttgatttagttacaattttgaagtgttactaaatct 28461084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 98 - 272
Target Start/End: Complemental strand, 2549429 - 2549253
Alignment:
Q  98 ctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacag 195  Q
    |||||||||||||||| ||| ||||||| || ||| ||  | |||||||||||||||||||||| |||||||| |||| |||||||| |||||||||||     
T  2549429 ctacaaattagctactaaatgagtaacaatttttatgtgttgcaagtaatactctcaagtgttactgaaatcatttagtaacacgggttttacctaacat 2549330  T
Q  196 ttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  2549329 ttgtcaaatattacaagatttaaatagtaacatttgtttttgatttaattacaatttagaagtgttactaaatctca 2549253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 8575211 - 8575386
Alignment:
Q  97 gctacaaattagctacttaataagtaacatttgttaagt--tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaaca 194  Q
    ||||| ||||||||||| ||| ||||||| || ||| ||  | |||||  ||||||||| ||||| |||||||| |||| ||||||||||||||||||||    
T  8575211 gctactaattagctactaaatgagtaacaatttttaggtgctgcaagttttactctcaaatgttactgaaatcatttagtaacacgggctttacctaaca 8575310  T
Q  195 gttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
     |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  8575311 tttgtcaaatgttacaagatctaaatagtaacagttgtttttgatttagttacaattttgaagtgttactaaatct 8575386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 54186648 - 54186524
Alignment:
Q  145 tactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggt 244  Q
    ||||||||| ||||| |||||||| |||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  54186648 tactctcaaatgttactgaaatcatttagtaacacgg-ctttacctaacatttgtcaaatgttacaagatctaaatagtaacagttgtttttgatttagt 54186550  T
Q  245 tacaattttgaagtgttactaaatct 270  Q
    ||||||||| ||||||||||||||||    
T  54186549 tacaattttaaagtgttactaaatct 54186524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 17525291 - 17525367
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggtta 246  Q
    |||| |||||||  |||| |||||| || || |||||||||||||||||||||||||||||||||||||||| ||||    
T  17525291 ttagtaacacggagtttatctaacatttatccaatgttacaagatctaaatagtaacatttgtttttgatttagtta 17525367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 29422542 - 29422633
Alignment:
Q  181 ggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||||||||||||||  || |||||||||| ||||||||| |||||||||| ||||| |||| || ||| |||| || ||||||| |||||||    
T  29422542 ggctttacctaacaaatgacaaatgttactagatctaaaaagtaacattttttttttatttagtaacacttttaaaatgttactgaatctca 29422633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 47066044 - 47066137
Alignment:
Q  175 aacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||||||||||||||||||| |||| ||  |||||| | || ||| || |||||||| || ||||||| ||||||||||| ||||||||||||||    
T  47066044 aacacgggctttacctaacaattgttcaggtgttactaaatttaattactaacattt-ttcttgatttagttacaattttcaagtgttactaaat 47066137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 2549546 - 2549508
Alignment:
Q  21 ctagtcttcaccattgagtaacatttatgcaacataatt 59  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  2549546 ctagtcttcactattcagtaacatttatgcaacataatt 2549508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 43600362 - 43600269
Alignment:
Q  170 ttagaaacacgggctttacctaacagttg-tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttac 263  Q
    |||| |||||||||||||||||||| ||| |||| | || | | || ||| ||||||||||| || ||||||| ||||||||||| |||||||||    
T  43600362 ttagtaacacgggctttacctaacaattgttcaagttttgctaaatttaattagtaacattt-ttcttgatttagttacaattttcaagtgttac 43600269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 24559030 - 24559102
Alignment:
Q  199 tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||||||||||| | || ||| ||||||||||| || ||||||| |||||| |||| || |||||||||||||||    
T  24559030 tcaaatgttactaaatttaattagtaacattt-ttcttgatttagttacattttttaattgttactaaatctca 24559102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 28461421 - 28461337
Alignment:
Q  26 cttcaccattgagtaacatttatgcaacataattttgcttcaattgcacct-aaactgttagctatagattggctacaaattagct 110  Q
    |||||| ||| |||||||||||||||||| |||||| || ||||| ||  | ||| ||||||||| ||||||||||| ||||||||    
T  28461421 cttcactattcagtaacatttatgcaacagaatttt-ctgcaattccaattaaaattgttagctacagattggctactaattagct 28461337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 97 - 272
Target Start/End: Original strand, 20427660 - 20427840
Alignment:
Q  97 gctacaaattagctacttaataagtaacatttgttaag--ttacaagtaatactctcaagt---gttagtgaaatcaattagaaacacgggctttaccta 191  Q
    |||||| ||||||||| || ||||||  |||| |||||  |||||||||||| ||||||||   |||| |||||| | |||| |||||||| ||||||||    
T  20427660 gctacagattagctacctactaagtattattttttaagacttacaagtaataatctcaagtactgttactgaaattatttagtaacacgggttttaccta 20427759  T
Q  192 acagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  20427760 acatttgtcaaaagttacaagatctaaatagtaacatttgtttttgatttagttacaattttgaattgttactaaatctca 20427840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 447 - 569
Target Start/End: Complemental strand, 47694508 - 47694390
Alignment:
Q  447 ttaaattaataacctgattgttaaccaccatttctctatatattcatggcggtgaagtaataatagcatatctattcctaatccgcttaatatatttcat 546  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  47694508 ttaaagtaataacctgattgc-aaccaccatttctctatatattcatgg---tgaagtaataatagcatatctattcctaatccgcttaagctatttcat 47694413  T
Q  547 ccaaatggctcttatcaaaattc 569  Q
    ||||||| |||||||||||||||    
T  47694412 ccaaatgactcttatcaaaattc 47694390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 20427568 - 20427642
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgcacctaaactgttagctatagattggctacaaattagctac 112  Q
    |||||||||||||||||| ||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  20427568 agtaacatttatgcaacaaaattt-gctacagttgtacctaaactgttagctatagattggctacaaattagctac 20427642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 33153725 - 33153859
Alignment:
Q  28 tcaccattgagtaacatttatgcaacataattttgcttcaattgcacctaaactgttagctatagattggctacaaattagctacttaataagtaacatt 127  Q
    |||||||| |||||||||||||||||||||||   || |||||||| |||||       ||| ||||||||||| |||||||||| ||||| | ||||||    
T  33153725 tcaccatttagtaacatttatgcaacataattac-ctacaattgcaactaaaa------ctagagattggctacgaattagctacctaatatggaacatt 33153817  T
Q  128 tgttaag--ttacaagtaatactctcaagtgttagtgaaatc 167  Q
    | | |||  ||| ||||||||||||||| ||||| |||||||    
T  33153818 tttcaagtattaaaagtaatactctcaattgttactgaaatc 33153859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 12190047 - 12189945
Alignment:
Q  170 ttagaaacacgggctttacctaacagttg-tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| |||||||||||||||||||| ||| ||||||||||| | || ||| |||||| |||| || ||||||| |||||| |||| || |||| |||| |    
T  12190047 ttagtaacacgggctttacctaacaattgttcaaatgttactaaatttaattagtaatattt-ttcttgatttagttacattttttaattgtttctaatt 12189949  T
Q  269 ctca 272  Q
    ||||    
T  12189948 ctca 12189945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 16222873 - 16222775
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| |||||||||||||||||||| || | ||| |||||| | || | | ||||||||||| || ||||||| ||||||||||| || |||||||||||    
T  16222873 ttagtaacacgggctttacctaacaattattcaagtgttactaaattttattagtaacattt-ttcttgatttagttacaattttcaaatgttactaaat 16222775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 5001635 - 5001744
Alignment:
Q  275 ccataaccacataaccaatccccaatgcctaatttgatacttctatatacctgaaacttaccatagatcacaaaacaaatcatgttctacatccaatacc 374  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  5001635 ccataaccgcataaccaatccccaatgcctaatttgatgcttctatatacctgaaatttatcatagatcacaaaacaaatcatgttctacatccaatacc 5001734  T
Q  375 aaaagataaa 384  Q
    ||| ||||||    
T  5001735 aaaggataaa 5001744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 37 - 272
Target Start/End: Complemental strand, 8833727 - 8833490
Alignment:
Q  37 agtaacatttatgcaacataattttgcttcaattgcacctaaact-gttagctatagattggctacaaattagctacttaataagtaacatttgttaagt 135  Q
    |||||||| ||||||||| ||||| ||||| |||||||||||| | ||  |||| ||||| ||| ||||||||||||  |||| |||||| || ||||||    
T  8833727 agtaacatatatgcaacaaaattt-gcttccattgcacctaaatttgtctgctagagatttgctgcaaattagctacaaaataggtaacagtttttaagt 8833629  T
Q  136 --tacaagtaatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtt 233  Q
      | | ||||| |||||||||||||| | |||||| |||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||| |    
T  8833628 gttgcgagtaagactctcaagtgttactaaaatcatttagtaacacggacttcacctaacatttatcaaatgttacaagatctaaatagtaacatttggt 8833529  T
Q  234 tttgatttggttacaattttgaagtgttactaaatctca 272  Q
    |||||||| |||||| |||| | || |||||||||||||    
T  8833528 tttgatttagttacatttttcatgttttactaaatctca 8833490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 143 - 272
Target Start/End: Original strand, 19371247 - 19371376
Alignment:
Q  143 aatactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttg 242  Q
    |||||| || || |||| |||||||| |||| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||     
T  19371247 aatactgtcgagcgttactgaaatcatttagtaacacagtctttacctaacatttgtcaaatgttacaagatctaaatagtaacatttatttttgattta 19371346  T
Q  243 gttacaattttgaagtgttactaaatctca 272  Q
    |||||||||||||| |||||||||||||||    
T  19371347 gttacaattttgaattgttactaaatctca 19371376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 144 - 270
Target Start/End: Original strand, 19341400 - 19341526
Alignment:
Q  144 atactctcaagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttgg 243  Q
    ||||| ||||| |||  |||||||| |||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |    
T  19341400 atactgtcaagcgttgctgaaatcatttagtaacacggtctttacctaacatttgtcaaatgtttcaagatctaaatagtaacatttatttttgatttag 19341499  T
Q  244 ttacaattttgaagtgttactaaatct 270  Q
    ||||||||||||| |||||||||||||    
T  19341500 ttacaattttgaattgttactaaatct 19341526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 29553724 - 29553622
Alignment:
Q  170 ttagaaacacgggctttacctaacagttg-tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| |||||| |||||| |||||| ||| ||||||||| | | || ||| ||||||||||| || ||||||||||||||||||| || |||||||||||    
T  29553724 ttagtaacacgcgctttaactaacaattgctcaaatgttgctaaatttaattagtaacattt-ttcttgatttggttacaattttcaattgttactaaat 29553626  T
Q  269 ctca 272  Q
    ||||    
T  29553625 ctca 29553622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 28249080 - 28249176
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    |||| |||||||||||||||||||| |||| ||| |||| | | || ||| ||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  28249080 ttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattt-ttcttgatttagttacaattttcaagtgttactaa 28249176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 29386594 - 29386473
Alignment:
Q  152 aagtgttagtgaaatcaattagaaacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaaca-tttgtttttgatttggttacaat 250  Q
    |||| ||| |||||| | |||| |||| |||||||||||| || || |||||| |||| | ||||||||||||||| ||| ||||| ||||  ||||| |    
T  29386594 aagtattactgaaattatttagtaacaggggctttacctaccatttatcaaatattactaaatctaaatagtaacatttttttttttatttacttacatt 29386495  T
Q  251 tttgaagtgttactaaatctca 272  Q
    ||| || |||||||||||||||    
T  29386494 ttttaaatgttactaaatctca 29386473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 6403683 - 6403588
Alignment:
Q  175 aacacgggctttacctaacagttg-tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatct 270  Q
    |||||||||||||||||||| ||| ||||||||||| | || ||| ||||||||||| || || |||| ||||||| ||| || |||||||||||||    
T  6403683 aacacgggctttacctaacaattgctcaaatgttactaaatttaattagtaacattt-ttcttaatttagttacaaatttcaattgttactaaatct 6403588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 10564321 - 10564270
Alignment:
Q  190 taacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgattt 241  Q
    ||||| || ||||||||||| ||||| |||||||||||||||||||||||||    
T  10564321 taacatttatcaaatgttactagatcaaaatagtaacatttgtttttgattt 10564270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 45356117 - 45356210
Alignment:
Q  170 ttagaaacacgggctttacctaacagttg-tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttac 263  Q
    |||| |||||||||||||||||||| ||| |||| |||| | | || ||| ||||||||||| || ||||||| ||||||||||| |||||||||    
T  45356117 ttagtaacacgggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattt-ttcttgatttagttacaattttcaagtgttac 45356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 6801835 - 6801937
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| |||| ||||||||||||||| |||| ||| |||||| | || ||| ||||||||||| || ||||||| || | | |||| ||||||||||||||    
T  6801835 ttagtaacaggggctttacctaacaattgttcaactgttactaaatttaattagtaacattt-ttattgatttagtaatagttttcaagtgttactaaat 6801933  T
Q  269 ctca 272  Q
    ||||    
T  6801934 ctca 6801937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 17634476 - 17634574
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| ||||||||||||||||| || |||| ||| |||||  | || ||| ||||||||||| || ||||||| ||||||||||| || |||||||||||    
T  17634476 ttagtaacacgggctttacctatcaattgttcaagtgttattaaatttaattagtaacattt-ttcttgatttagttacaattttcaaatgttactaaat 17634574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 31347444 - 31347346
Alignment:
Q  170 ttagaaacacgggctttacctaacagttg-tcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    |||| ||||| || |||| |||||| ||| ||||||||||| | || ||| ||||| ||||| || ||||||||||||||||||| || |||||||||||    
T  31347444 ttagtaacacaggatttatctaacaattgatcaaatgttactaaatttaattagtagcattt-ttcttgatttggttacaattttcaattgttactaaat 31347346  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 25638902 - 25638806
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    |||| |||| ||| ||||||||||| |||| ||| |||| | | || ||| ||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  25638902 ttagtaacatgggttttacctaacaattgttcaagtgttgctaaatttaattagtaacattt-ttcttgatttagttacaattttcaagtgttactaa 25638806  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 5528787 - 5528740
Alignment:
Q  220 tagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    ||||||||||| || ||||||| ||||||||||| ||||||||||||||    
T  5528787 tagtaacattt-ttcttgatttagttacaattttcaagtgttactaaat 5528740  T

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Target: scaffold1005 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 737 - 645
Alignment:
Q  175 aacacgggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaat 268  Q
    ||||| |||||||||||||| || ||||| |||||| ||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  737 aacaccggctttacctaacatttatcaaaagttacatgatctaaatagtaacattt-ttttttatttagttacaatttttaagtgttactaaat 645  T

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Target: scaffold0576 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 6794 - 6698
Alignment:
Q  170 ttagaaacacgggctttacctaacagttgt-caaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaa 266  Q
    |||| ||||| |||||||||||||| |||| ||| |||| | | || ||| ||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  6794 ttagtaacaccggctttacctaacaattgttcaagtgttgctaaatttaattagtaacattt-ttcttgatttagttacaatttttaagtgttactaa 6698  T

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Target: scaffold0726 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 347 - 418
Alignment:
Q  24 gtcttcaccattgagtaacatttatgcaacataattttgcttcaattgcacct-aaactgttagctatagatt 95  Q
    |||||||| ||| |||||||||||||||||| || |||||| ||||||| ||| |||| ||||||||||||||    
T  347 gtcttcactattaagtaacatttatgcaaca-aaatttgctacaattgctcctaaaacagttagctatagatt 418  T

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Target: scaffold0554 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 7373 - 7285
Alignment:
Q  181 ggctttacctaacagttgtcaaatgttacaagatctaaatagtaacatttgtttttgatttggttacaattttgaagtgttactaaatctca 272  Q
    |||||||||||||| || ||||||  | |||||| |||||||||||||   ||||| |||| || |||| ||| || |||||||||||||||    
T  7373 ggctttacctaacatttatcaaatccttcaagatgtaaatagtaacat---ttttttatttagtaacaaatttcaaatgttactaaatctca 7285  T

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