View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12159_low_4 (Length: 440)

Name: NF12159_low_4
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12159_low_4
NF12159_low_4
[»] chr5 (25 HSPs)
chr5 (11-200)||(10216249-10216438)
chr5 (200-324)||(10216524-10216648)
chr5 (227-417)||(10605000-10605190)
chr5 (201-417)||(10611958-10612174)
chr5 (213-350)||(11048419-11048563)
chr5 (11-148)||(10210455-10210593)
chr5 (248-417)||(10740487-10740660)
chr5 (52-200)||(10108510-10108665)
chr5 (247-411)||(10581250-10581414)
chr5 (201-350)||(10746768-10746921)
chr5 (355-417)||(10216648-10216710)
chr5 (276-417)||(10565275-10565416)
chr5 (292-417)||(10659921-10660046)
chr5 (248-417)||(10762921-10763094)
chr5 (299-417)||(10652045-10652163)
chr5 (299-417)||(10588273-10588391)
chr5 (338-417)||(9836210-9836289)
chr5 (11-184)||(9683075-9683233)
chr5 (298-417)||(7193253-7193372)
chr5 (296-416)||(10559151-10559271)
chr5 (298-417)||(10716782-10716901)
chr5 (202-346)||(10582307-10582450)
chr5 (371-417)||(10746930-10746976)
chr5 (371-417)||(11048572-11048618)
chr5 (160-200)||(10210615-10210655)
[»] chr6 (5 HSPs)
chr6 (261-417)||(12899818-12899974)
chr6 (261-417)||(12958326-12958482)
chr6 (261-417)||(12907438-12907594)
chr6 (269-417)||(12932527-12932675)
chr6 (269-417)||(12948892-12949040)
[»] scaffold0692 (1 HSPs)
scaffold0692 (261-417)||(7541-7697)
[»] chr2 (1 HSPs)
chr2 (269-417)||(17923216-17923364)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 10216249 - 10216438
Alignment:
Q  11 cacagagcaatttgatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10216249 cacagagcaatttgatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatc 10216348  T
Q  111 ttcaacatttcactggaaaaatcattaggagacaaagatggtgatgatagaatggtgaaggatgggttcaggatacgcagataaataaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10216349 ttcaacatttcactggaaaaatcattaggagacaaagatggtgatgatagaatggtgaaggatgggttcaggataagcagataaataaca 10216438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 200 - 324
Target Start/End: Original strand, 10216524 - 10216648
Alignment:
Q  200 acaaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  10216524 acaaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatttaagcatttagaacat 10216623  T
Q  300 acctggaggagtgtagccaacggtt 324  Q
    |||||||||||||||||||||||||    
T  10216624 acctggaggagtgtagccaacggtt 10216648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 227 - 417
Target Start/End: Complemental strand, 10605190 - 10605000
Alignment:
Q  227 gtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttcc 326  Q
    |||| ||||||||||| ||||| || | || |||||| ||||||||||  |||||| |||| ||||||||||||||||||||||  || ||||| |||||    
T  10605190 gtaaaatattaagtatgcaccagaatagagtagaattgaaagaaacaactgaagattcaagaatttagaacatacctggaggagcatatccaacagttcc 10605091  T
Q  327 ttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    |||||| |||||||||||||||||  |||||||||||||||||||||  ||||| | | ||||||||||||||||||||||||||||||||    
T  10605090 ttttatcccaattgtactagtatttatatgagaggtaccaccaatggacgagaccagtcttgctatgccaaaatcactcacatgagcaacc 10605000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 201 - 417
Target Start/End: Complemental strand, 10612174 - 10611958
Alignment:
Q  201 caaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacata 300  Q
    |||||||||||||||| ||| || | |||| | ||||||| | ||| ||||||||||| ||||||||||||| ||  ||| | || | ||||||||||||    
T  10612174 caaaagctattaatacaatgccactagtaaaacattaagtttacacaaaaacataggaaaattcaaagaaacgatcaaaggttcatgaatttagaacata 10612075  T
Q  301 cctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaaat 400  Q
    ||||||||||  |||||||| || ||||| |||||||||||  |||||||||||||||||| |||||||||||  ||||||| | |||||||||||||||    
T  10612074 cctggaggagcatagccaacagtccctttaattccaattgtcttagtattcttatgagaggaaccaccaatggccgagacaagtcttgctatgccaaaat 10611975  T
Q  401 cactcacatgagcaacc 417  Q
    |||||||||| ||||||    
T  10611974 cactcacatgtgcaacc 10611958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 213 - 350
Target Start/End: Original strand, 11048419 - 11048563
Alignment:
Q  213 atactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcat-------ttagaacatacctgg 305  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||       |||||||| ||||||    
T  11048419 atactatgtcaatggtaatatgttaagtattcaccaaaacataggagaattcaaagaaacagtggaagatttaagcatttagaaattagaacagacctgg 11048518  T
Q  306 aggagtgtagccaacggttccttttattccaattgtactagtatt 350  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||    
T  11048519 aggagcgtagccaatggttccttttattccaattgtactagtatt 11048563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 10210455 - 10210593
Alignment:
Q  11 cacagagcaattt-gatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacat 109  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  10210455 cacagagcaattttgatacatctagttgtatgaaactcctggacctggtgatgcatattcccttagccaccattcctttaatatctctctgactcaacat 10210554  T
Q  110 cttcaacatttcactggaaaaatcattaggagacaaaga 148  Q
    || || | |||||||||| | ||| ||||||||||||||    
T  10210555 ctgcagcctttcactggatatatctttaggagacaaaga 10210593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 10740487 - 10740660
Alignment:
Q  248 aaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacata----cctggaggagtgtagccaacggttccttttattccaattgtac 343  Q
    |||||||| ||| ||| ||||||||||||| | || || | ||||||||||||    ||||||||||  |||||||| ||||||||||||||||||||||    
T  10740487 aaaacatacgaggatttaaagaaacaatgggatattcatgaatttagaacatatatacctggaggagcatagccaacagttccttttattccaattgtac 10740586  T
Q  344 tagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    |||| | ||| ||||||||| |  |||||| |||||||| | ||||||||||||||||||||||||||||||||    
T  10740587 tagtttccttgtgagaggtatcgtcaatggctgagacaagtcttgctatgccaaaatcactcacatgagcaacc 10740660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 10108665 - 10108510
Alignment:
Q  52 accttgtgatgcatattcccttagccaccattcc-tttaatatctttcagactcaacatcttcaacatttcactggaaaaatcattaggagacaaagatg 150  Q
    |||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| || | |||||||||||| ||| |||||||||||||| |    
T  10108665 accttgtgatgcatattcccttagccaccattccttttaatatctctctgactcaacatctgcagcctttcactggaaatatctttaggagacaaagacg 10108566  T
Q  151 gt------gatgatagaatggtgaaggatgggttcaggatacgcagataaataaca 200  Q
    ||      |||| | |||| |||||| |||||||||||| | ||||||||||||||    
T  10108565 gtgtcggcgatggtggaatcgtgaagaatgggttcaggaaaagcagataaataaca 10108510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 247 - 411
Target Start/End: Complemental strand, 10581414 - 10581250
Alignment:
Q  247 caaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactag 346  Q
    |||||||||  || ||||||| |||| |||||||   |||  ||||| ||||||||  ||||||  |||||||  ||||||||||||||| |||||||||    
T  10581414 caaaacatattaggattcaaataaacgatggaagtatcaataatttaaaacatacccagaggagcatagccaattgttccttttattccagttgtactag 10581315  T
Q  347 tattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatga 411  Q
    |||||||||||| |||||||| ||||| |||||||| | ||||| ||||||||||||||||||||    
T  10581314 tattcttatgagtggtaccacaaatggctgagacaagtcttgctgtgccaaaatcactcacatga 10581250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 201 - 350
Target Start/End: Original strand, 10746768 - 10746921
Alignment:
Q  201 caaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacata 300  Q
    |||||||||||||||| |||||  | |||  ||||||| | |  ||||||||||||||| |||||||||||||||||||||  |||| ||||||||||||    
T  10746768 caaaagctattaatacgatgtccctagtataatattaaatctaaaccaaaacataggagtattcaaagaaacaatggaagactcaagaatttagaacata 10746867  T
Q  301 ----cctggaggagtgtagccaacggttccttttattccaattgtactagtatt 350  Q
        ||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  10746868 tatacctggaggagcatagccaacagttccttttattccaattgtactagtatt 10746921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 10216648 - 10216710
Alignment:
Q  355 tgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10216648 tgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 10216710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 417
Target Start/End: Complemental strand, 10565416 - 10565275
Alignment:
Q  276 ggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggtt 375  Q
    ||||||| |||||||||| |||||||| |||||||  ||||| || |||||||| | | |||||||||| ||||| |||| ||||||||  ||||| | |    
T  10565416 ggaagattcaagcatttaaaacataccaggaggagaatagcctactgttcctttaacttcaattgtacttgtatttttataagaggtactgccaatagct 10565317  T
Q  376 gagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    ||||| | | ||||||||||||||||||||||||||||||||    
T  10565316 gagacgagtcttgctatgccaaaatcactcacatgagcaacc 10565275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 10659921 - 10660046
Alignment:
Q  292 tagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgcta 391  Q
    ||||| |||||||||||||  |||||||| || ||||| |||||||||||||||   | ||| ||||||||| |  |||||| |||||||| | ||||||    
T  10659921 tagaaaatacctggaggagcatagccaacagtccctttaattccaattgtactaaattccttgtgagaggtatcgtcaatggctgagacaagtcttgcta 10660020  T
Q  392 tgccaaaatcactcacatgagcaacc 417  Q
    ||||||||||||||||||||||||||    
T  10660021 tgccaaaatcactcacatgagcaacc 10660046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 10762921 - 10763094
Alignment:
Q  248 aaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacata----cctggaggagtgtagccaacggttccttttattccaattgtac 343  Q
    |||||||| ||| ||||||||||| ||||| |||  |||| ||| ||||||||    ||||||||||  |||||||| ||||||||||||||| ||||||    
T  10762921 aaaacatacgaggattcaaagaaataatgggagactcaagaattcagaacatatatacctggaggagcatagccaacagttccttttattccagttgtac 10763020  T
Q  344 tagtattcttatgagaggtaccaccaatgg-ttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    |||| | |||| ||||||||| | |||||| |||| || | | ||||||| ||||||||||||||||||||||||    
T  10763021 tagtttccttaagagaggtacaagcaatggcttga-actagtcttgctattccaaaatcactcacatgagcaacc 10763094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 417
Target Start/End: Original strand, 10652045 - 10652163
Alignment:
Q  299 tacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaa 398  Q
    ||||||||||||  |||||||| || ||||| ||||||||||||||||| | ||| | |||||||    |||||| |||||||| | |||||||||||||    
T  10652045 tacctggaggagcatagccaacagtccctttaattccaattgtactagtttccttgttagaggtattgtcaatggctgagacaagtcttgctatgccaaa 10652144  T
Q  399 atcactcacatgagcaacc 417  Q
    |||||||||||||||||||    
T  10652145 atcactcacatgagcaacc 10652163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 417
Target Start/End: Original strand, 10588273 - 10588391
Alignment:
Q  299 tacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaa 398  Q
    ||||||||||||  |||||||| || ||||| ||||||||||||||||| | || |||||| ||  |  ||||   |||||||| | |||||||||||||    
T  10588273 tacctggaggagcatagccaacagtccctttaattccaattgtactagtttcctgatgagatgtgtcttcaataactgagacaagtcttgctatgccaaa 10588372  T
Q  399 atcactcacatgagcaacc 417  Q
    |||||||||||||||||||    
T  10588373 atcactcacatgagcaacc 10588391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 9836210 - 9836289
Alignment:
Q  338 ttgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    |||||||||| | |||||||||||||||  |||||| ||||| || | |||||||||||||||||||||| |||||||||    
T  9836210 ttgtactagtttccttatgagaggtaccgtcaatggctgagataagtcttgctatgccaaaatcactcacgtgagcaacc 9836289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 9683075 - 9683233
Alignment:
Q  11 cacagagcaatttgatacatctggctgtatgaaactcctggaccttgtgatgcatattcccttagccaccattcctttaatatctttcagactcaacatc 110  Q
    |||||||||||||||||||||||||| |||| ||||      ||||||||||||||||||| |||| |||||||||||||| |||    |||||||||||    
T  9683075 cacagagcaatttgatacatctggctttatggaact------ccttgtgatgcatattcccctagcaaccattcctttaatgtctacatgactcaacatc 9683168  T
Q  111 ttcaacatttcactggaaaaatcattaggagacaaagatggtgatgatagaatggtgaaggatgggttcaggat 184  Q
    |  | |         |||||||| |||||||||||||| || | |||| |||| ||||||||||||| ||||||    
T  9683169 tggagc---------gaaaaatctttaggagacaaagacggagttgatggaattgtgaaggatgggtccaggat 9683233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 417
Target Start/End: Complemental strand, 7193372 - 7193253
Alignment:
Q  298 atacctggaggagtgtagccaacggttccttttattccaattgtactagtattctt-atgagaggtaccaccaatggttgagacaaatgttgctatgcca 396  Q
    |||||||||||||  |||||||  || ||||| ||||||||||||||||| ||||  |||||||||  |  ||||   |||||||| | |||||||||||    
T  7193372 atacctggaggagcatagccaatagtccctttaattccaattgtactagt-ttctcgatgagaggtgtcgtcaataactgagacaagtcttgctatgcca 7193274  T
Q  397 aaatcactcacatgagcaacc 417  Q
    |||||||||||||||||||||    
T  7193273 aaatcactcacatgagcaacc 7193253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 416
Target Start/End: Complemental strand, 10559271 - 10559151
Alignment:
Q  296 acatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgcc 395  Q
    |||||||||||||||  |||||||| || ||||||||||||||||| ||||| | |||| ||||  ||||  |    | |||||| | | ||||||||||    
T  10559271 acatacctggaggagcatagccaacagtcccttttattccaattgtgctagtttccttaggagatataccgtccgcagatgagacgagtcttgctatgcc 10559172  T
Q  396 aaaatcactcacatgagcaac 416  Q
    |||||||||||||||||||||    
T  10559171 aaaatcactcacatgagcaac 10559151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 417
Target Start/End: Original strand, 10716782 - 10716901
Alignment:
Q  298 atacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccaccaatggttgagacaaatgttgctatgccaa 397  Q
    |||||||| ||||  ||||||| | | ||||||||||||| |||||| |||| ||||| |||||||   |||||    ||||||| | ||||||||||||    
T  10716782 atacctgggggagcatagccaatgctcccttttattccaactgtactggtatccttatcagaggtaatgccaatatccgagacaagttttgctatgccaa 10716881  T
Q  398 aatcactcacatgagcaacc 417  Q
    ||||| ||||||||||||||    
T  10716882 aatcagtcacatgagcaacc 10716901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 346
Target Start/End: Complemental strand, 10582450 - 10582307
Alignment:
Q  202 aaaagctattaatactatgtcaatggtaatatattaagtattcaccaaaacataggagaattcaaagaaacaatggaagatgcaagcatttagaacatac 301  Q
    ||||||| |||||||||||||  |||||  || ||||||   ||||||| |||||||  ||| |||||||||||||||||| ||||  ||||| || ||     
T  10582450 aaaagctgttaatactatgtcgctggtataattttaagtcaacaccaaa-cataggattattaaaagaaacaatggaagattcaagactttagtacgtat 10582352  T
Q  302 ctggaggagtgtagccaacggttccttttattccaattgtactag 346  Q
    || || |||  |||||||| ||||||||| | |||||||||||||    
T  10582351 ctagaagagcatagccaactgttccttttgtcccaattgtactag 10582307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 10746930 - 10746976
Alignment:
Q  371 tggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    ||| |||||||| | ||||||||||||||||| ||||||||||||||    
T  10746930 tggctgagacaagttttgctatgccaaaatcagtcacatgagcaacc 10746976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 11048572 - 11048618
Alignment:
Q  371 tggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    ||| |||||||| | |||| |||||||||||||||||||||||||||    
T  11048572 tggctgagacaagttttgcaatgccaaaatcactcacatgagcaacc 11048618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 10210615 - 10210655
Alignment:
Q  160 gaatggtgaaggatgggttcaggatacgcagataaataaca 200  Q
    |||| |||||| |||||||||||||| ||||||||||||||    
T  10210615 gaatcgtgaagaatgggttcaggataagcagataaataaca 10210655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 261 - 417
Target Start/End: Complemental strand, 12899974 - 12899818
Alignment:
Q  261 attcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagag 360  Q
    ||||||| |||||||||||||| |||| ||||| |||||||| |||||||  || ||||| |||||||||||||||||||| ||||||||||||||||||    
T  12899974 attcaaaaaaacaatggaagattcaagaatttaaaacatacccggaggagcataaccaactgttccttttattccaattgtgctagtattcttatgagag 12899875  T
Q  361 gtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    ||||||  ||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  12899874 gtaccagaaattgttgagacaagtcttgctatgccaaaatcactcacatgagcaacc 12899818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 261 - 417
Target Start/End: Complemental strand, 12958482 - 12958326
Alignment:
Q  261 attcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagag 360  Q
    ||||||| |||||||||||||| |||| ||||| |||||||| |||||||  || ||||| |||||||||||||||||||| ||||||||||||| ||||    
T  12958482 attcaaaaaaacaatggaagattcaagaatttaaaacatacccggaggagcataaccaactgttccttttattccaattgtgctagtattcttattagag 12958383  T
Q  361 gtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    |||||   |||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  12958382 gtaccggaaatggttgagacaagtcttgctattccaaaatcactcacatgagcaacc 12958326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 261 - 417
Target Start/End: Complemental strand, 12907594 - 12907438
Alignment:
Q  261 attcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagag 360  Q
    ||||||| ||||||||||||||  ||| ||||| |||||||| || ||||  || ||||| |||||||||||||| ||| | ||||||||||||||||||    
T  12907594 attcaaaaaaacaatggaagattaaagaatttaaaacatacccggtggagcataaccaactgttccttttattccgattatgctagtattcttatgagag 12907495  T
Q  361 gtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    ||||||  |||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  12907494 gtaccagaaatggttgagacaagtcttgctatgccaaaatcactcaaatgagcaacc 12907438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 417
Target Start/End: Complemental strand, 12932675 - 12932527
Alignment:
Q  269 aaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccacc 368  Q
    |||||||||||||| |||| ||||| |||||||| || ||||  || ||||| |||||||||| ||| ||||| ||||||||||||| |||||||||       
T  12932675 aaacaatggaagattcaagaatttaaaacatacccggtggagcataaccaactgttccttttactccgattgtgctagtattcttattagaggtaccgga 12932576  T
Q  369 aatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  12932575 aatggttgagacaagtcttgctatgccaaaatcactcacatgagcaacc 12932527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 269 - 417
Target Start/End: Complemental strand, 12949040 - 12948892
Alignment:
Q  269 aaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccacc 368  Q
    |||||||||||||| |||| || || ||| |||| || ||||  || ||||| |||||||||||||||||||||||||||||||||| ||||||||        
T  12949040 aaacaatggaagattcaagaatgtaaaacgtacccggtggagcataaccaactgttccttttattccaattgtactagtattcttattagaggtactgga 12948941  T
Q  369 aatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  12948940 aatggttgagacaagtcttgctatgccaaaatcactcacatgagcaacc 12948892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 261 - 417
Target Start/End: Complemental strand, 7697 - 7541
Alignment:
Q  261 attcaaagaaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagag 360  Q
    ||||||| |||||||||||||| |||| ||||| |||||||| || ||||  || ||| | |||||||||||||| ||||| ||||||||||||| |||     
T  7697 attcaaaaaaacaatggaagattcaagaatttaaaacatacccggtggagcataaccagctgttccttttattccgattgtgctagtattcttattagac 7598  T
Q  361 gtaccaccaatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    ||||||  |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  7597 gtaccagaaatggttgagacaagtcttgctatgccaaaatcactcacatgagcaacc 7541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 269 - 417
Target Start/End: Original strand, 17923216 - 17923364
Alignment:
Q  269 aaacaatggaagatgcaagcatttagaacatacctggaggagtgtagccaacggttccttttattccaattgtactagtattcttatgagaggtaccacc 368  Q
    |||||| | ||||| |||| ||||| |||||||| |  ||||  || ||||| |||||||||||||| || |||||||||||||||| |||||||||       
T  17923216 aaacaaagcaagattcaagaatttaaaacatacccgatggagcataaccaactgttccttttattccgatcgtactagtattcttattagaggtaccgga 17923315  T
Q  369 aatggttgagacaaatgttgctatgccaaaatcactcacatgagcaacc 417  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  17923316 aatggttgagacaagtcttgctatgccaaaatcactcacatgagcaacc 17923364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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