View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12159_low_6 (Length: 394)
Name: NF12159_low_6
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12159_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3374941 - 3374868
Alignment:
| Q |
1 |
ttgatgacctcacccttggatcaaccccgaataaaacatgctttaacaaacatttttcaatacttactctttta |
74 |
Q |
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| T |
3374941 |
ttgatgaccttacccttggatcaaccctgaacaaaacatgctttaacaaacatttttcaatacttactctttta |
3374868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 376
Target Start/End: Complemental strand, 3369689 - 3369547
Alignment:
| Q |
234 |
tttaagaccactcaaacactgacataagcctaactaggtcattcataagccaattcaaat---gtagcttcaatgccaatagttagaaatcattataaaa |
330 |
Q |
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| T |
3369689 |
tttaagaccactcaa----tgtcataagcctaaataagttattcataagccaattcaaatgtagtagcctcaatgctaataattagaaatcattctaaaa |
3369594 |
T |
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| Q |
331 |
ttgttgattggcataactcaagaaataacaaattt-atagccaatat |
376 |
Q |
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| T |
3369593 |
ttagtgattgtcataattcaagaactaaataatttcatagccaatat |
3369547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 376
Target Start/End: Complemental strand, 3395306 - 3395164
Alignment:
| Q |
234 |
tttaagaccactcaaacactgacataagcctaactaggtcattcataagccaattcaaat---gtagcttcaatgccaatagttagaaatcattataaaa |
330 |
Q |
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||||||||||||||| || ||||||||||| || || |||||||||||||||||||| ||||| ||||||| |||| |||||||||||| ||||| |
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| T |
3395306 |
tttaagaccactcaa----tgtcataagcctaaataagttattcataagccaattcaaatgtagtagcctcaatgctaataattagaaatcattctaaaa |
3395211 |
T |
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| Q |
331 |
ttgttgattggcataactcaagaaataacaaattt-atagccaatat |
376 |
Q |
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|| |||||| ||||| ||||||| ||| ||||| ||||||||||| |
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| T |
3395210 |
ttagtgattgtcataattcaagaactaaataatttcatagccaatat |
3395164 |
T |
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