View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12159_low_7 (Length: 392)
Name: NF12159_low_7
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12159_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 35 - 250
Target Start/End: Original strand, 6713925 - 6714153
Alignment:
| Q |
35 |
acccaagacacattatcctccataagagttagggtttcactactaatgaggttnnnnnnntccacccttaaatcttgttcttggatnnnnnnnnn----- |
129 |
Q |
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| T |
6713925 |
acccaagacacattatcctccataagagttagggtttaactactaatgaggttaaaaaaatccacccttaaatcttgttcttggataaaaaaaaaaaaaa |
6714024 |
T |
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| Q |
130 |
--------gccttacatcaaagggtacgtaagtcagagaccacatctctttgattggaaactagaaaaccctagataattgatccgcaaagcaagaacct |
221 |
Q |
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| T |
6714025 |
aaaaaaaagccttacatcaaagggtacgtaagtcagagaccacatctctttgattggaaactagaaaaccctagataattgatccgcaaagcaagaacct |
6714124 |
T |
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| Q |
222 |
ataccaagatattaaacaaccactttcac |
250 |
Q |
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| T |
6714125 |
ataccaagatattaaacaaccactttcac |
6714153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 6714162 - 6714228
Alignment:
| Q |
307 |
tcagagaacaccaaagggtaagtcagagacgaccacaaggaagcaagatacaatacattgtaactag |
373 |
Q |
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| T |
6714162 |
tcagagaacaccaaagggtaagtcagagacgaccacaaggaagcaagatacaatacattgtaactag |
6714228 |
T |
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