View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12159_low_8 (Length: 365)

Name: NF12159_low_8
Description: NF12159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12159_low_8
NF12159_low_8
[»] scaffold0352 (2 HSPs)
scaffold0352 (107-307)||(16629-16829)
scaffold0352 (21-75)||(16540-16594)
[»] chr4 (5 HSPs)
chr4 (138-365)||(32651082-32651310)
chr4 (284-365)||(41810185-41810266)
chr4 (324-365)||(38467710-38467751)
chr4 (230-290)||(12506525-12506584)
chr4 (326-365)||(3649885-3649924)
[»] chr1 (4 HSPs)
chr1 (237-365)||(17726046-17726174)
chr1 (310-365)||(22368184-22368239)
chr1 (298-359)||(14184705-14184766)
chr1 (304-365)||(32440628-32440689)
[»] chr3 (4 HSPs)
chr3 (284-365)||(52130803-52130884)
chr3 (222-365)||(19766028-19766169)
chr3 (304-365)||(11394032-11394093)
chr3 (304-365)||(46233942-46234003)
[»] chr6 (2 HSPs)
chr6 (120-186)||(4289976-4290044)
chr6 (299-365)||(31444785-31444850)
[»] chr7 (2 HSPs)
chr7 (284-365)||(7841301-7841382)
chr7 (304-365)||(21820154-21820214)
[»] chr8 (3 HSPs)
chr8 (299-365)||(44663658-44663723)
chr8 (304-362)||(19962047-19962104)
chr8 (324-365)||(35349005-35349046)
[»] chr2 (3 HSPs)
chr2 (299-365)||(4453792-4453857)
chr2 (335-365)||(7161830-7161860)
chr2 (304-365)||(9208584-9208645)
[»] scaffold0157 (1 HSPs)
scaffold0157 (230-290)||(13893-13952)
[»] scaffold0152 (1 HSPs)
scaffold0152 (298-364)||(10210-10275)
[»] chr5 (1 HSPs)
chr5 (253-311)||(26044778-26044836)


Alignment Details
Target: scaffold0352 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 107 - 307
Target Start/End: Original strand, 16629 - 16829
Alignment:
Q  107 agtcatgagaatgtatgtgcattggaatagtaaaaatatcacactgatttttagcatcggtgaacaattagagttccaatagagaaaattcaaatttgaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  16629 agtcatgagaatgtatgtgcattggaatagtaaaaatatcacactgatttttagcatcggtgaacaattagagttccaatggggaaaattcaaatttgaa 16728  T
Q  207 ttgatggtagtgttctgtgtaagccagcattaagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaatggtcatgattgtttg 306  Q
    |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  16729 ttgatggttgtgatgtgtgtaagccagcattaagatatgatcaaatggctgatatgttaattgtgcctaatgatagagatctaatggtcatgattgtttg 16828  T
Q  307 g 307  Q
    |    
T  16829 g 16829  T

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Target: scaffold0352; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 16540 - 16594
Alignment:
Q  21 ggaattaagagaaggaatgcagagaaagaatcagtgatgaaggttttggttgatt 75  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16540 ggaattaagagaaggaatgcagagaaagaattagtgatgaaggttttggttgatt 16594  T

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Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 138 - 365
Target Start/End: Original strand, 32651082 - 32651310
Alignment:
Q  138 aaaaatatcacactgatttttagca--tcggtgaacaattagagttccaatagagaaaattcaaatttgaattgatggtagtgttctgtgtaagccagca 235  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||| |  |||||||||||||||||||||||| ||| | |||| |||||| ||    
T  32651082 aaaaatatcacactgatttttagcggttcggtgaacaattagagttccaatgggaaaaattcaaatttgaattgatggttgtgatgtgtgcaagccatca 32651181  T
Q  236 ttaagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaatggtcatgattgtttggcgcctaaaaatcttaaaattagggtttt 335  Q
    ||||||| ||||||| || ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32651182 ttaagatgtgatcaa-tgactgatatgataattgcgcctaatgatagagatctaatggtcatgattgtttggcgcctaaaaatcttagaattagggtttt 32651280  T
Q  336 aagtgataattggagtgttaactaggatta 365  Q
    ||||||||||||||||||||||||||||||    
T  32651281 aagtgataattggagtgttaactaggatta 32651310  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 41810266 - 41810185
Alignment:
Q  284 gatctaatggtcatgattgtttggcgcctaaaaatcttaaaattagggttttaagtgataattggagtgttaactaggatta 365  Q
    ||||||| ||||  ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41810266 gatctaacggtctggattgattggcgcttaaaaatcttaaaattagggttttaagtggtaattggagtgttaactaggatta 41810185  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 38467710 - 38467751
Alignment:
Q  324 aattagggttttaagtgataattggagtgttaactaggatta 365  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  38467710 aattagggttttaagtgttaattggagtgttaactaggatta 38467751  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 12506584 - 12506525
Alignment:
Q  230 ccagcattaagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaa 290  Q
    ||||||||||||| ||||||| |||||||||||||||||| | |||| |||||||||||||    
T  12506584 ccagcattaagatctgatcaa-tggctgatatgataattgcgcctaacgatagagatctaa 12506525  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 3649924 - 3649885
Alignment:
Q  326 ttagggttttaagtgataattggagtgttaactaggatta 365  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  3649924 ttagggttttaagtgttaattggagtgttaactaggatta 3649885  T

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Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 237 - 365
Target Start/End: Complemental strand, 17726174 - 17726046
Alignment:
Q  237 taagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaatggtcatgattgtttggcgcctaaaaatcttaaaattagggtttta 336  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17726174 taagatatgatcaaatggctgatatgataattgcgtctaatgatagagatctaatggtcatgattgtttggcgcctaaaaatcttagaattagggtttta 17726075  T
Q  337 agtgataattggagtgttaactaggatta 365  Q
    |||||||||||||||||||||||||||||    
T  17726074 agtgataattggagtgttaactaggatta 17726046  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 22368184 - 22368239
Alignment:
Q  310 cctaaaaatcttaaaattagggttttaagtgataattggagtgttaactaggatta 365  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  22368184 cctaaaaatcttagaattagggttttaagtgataattgaagtgttaactaggatta 22368239  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 359
Target Start/End: Complemental strand, 14184766 - 14184705
Alignment:
Q  298 gattgtttggcgcctaaaaatcttaaaattagggttttaagtgataattggagtgttaacta 359  Q
    ||||| ||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||||    
T  14184766 gattgattggcgcctaaaaatcttagaattagagttttaagtggtaattagagtgttaacta 14184705  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 32440628 - 32440689
Alignment:
Q  304 ttggcgcctaaaaatcttaaaattagggtttta-agtgataattggagtgttaactaggatta 365  Q
    ||||||||||||| | |||  |||||||||||  |||||||||||||||||||||||||||||    
T  32440628 ttggcgcctaaaact-ttaggattagggttttggagtgataattggagtgttaactaggatta 32440689  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 52130884 - 52130803
Alignment:
Q  284 gatctaatggtcatgattgtttggcgcctaaaaatcttaaaattagggttttaagtgataattggagtgttaactaggatta 365  Q
    ||||||| ||||  ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||    
T  52130884 gatctaacggtctggattgattggcgcctaaaaatcttagaattagggttttaagtggtaattggagtgttacctaggatta 52130803  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 365
Target Start/End: Complemental strand, 19766169 - 19766028
Alignment:
Q  222 tgtgtaagccagcattaagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaatggtcatgattgtttggcgcctaaaaatctt 321  Q
    |||| |||||||||||||||| |||||||  |||||||||| |||   |||||||||| | ||||| || || |  ||||||||||||||||||||   |    
T  19766169 tgtgcaagccagcattaagatttgatcaag-ggctgatatgttaagcttgtctaatgacatagatccaacggcctggattgtttggcgcctaaaaa-agt 19766072  T
Q  322 aaaattagggttttaagtgataattggagtgttaactaggatta 365  Q
    |  ||||||||||  |||| ||||||||||||||||||||||||    
T  19766071 aggattagggtttggagtgttaattggagtgttaactaggatta 19766028  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 11394093 - 11394032
Alignment:
Q  304 ttggcgcctaaaaatcttaaaattagggtttta-agtgataattggagtgttaactaggatta 365  Q
    ||||||||||||| | |||  |||||||||||  |||||||||||||||||||||||||||||    
T  11394093 ttggcgcctaaaact-ttaggattagggttttggagtgataattggagtgttaactaggatta 11394032  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 46233942 - 46234003
Alignment:
Q  304 ttggcgcctaaaaatcttaaaattagggtttta-agtgataattggagtgttaactaggatta 365  Q
    ||||||||||||| | |||  |||||||||||  |||||||||||||||||||||||||||||    
T  46233942 ttggcgcctaaaact-ttaggattagggttttggagtgataattggagtgttaactaggatta 46234003  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 4290044 - 4289976
Alignment:
Q  120 tatgtgcattggaatagtaaaaatatcacactgatttttagc--atcggtgaacaattagagttccaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||    
T  4290044 tatgtgcattggaatagtaaaaatatcacactgatttttagcggatcggtgaaaaattagagtttcaat 4289976  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 31444850 - 31444785
Alignment:
Q  299 attgtttggcgcctaaaaatcttaaaattagggttttaagtgataattggagtgttaactaggatta 365  Q
    |||| ||||||||||||| | | | ||||||||||||||||  ||||||||||||||||||||||||    
T  31444850 attgattggcgcctaaaattat-agaattagggttttaagtagtaattggagtgttaactaggatta 31444785  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 7841382 - 7841301
Alignment:
Q  284 gatctaatggtcatgattgtttggcgcctaaaaatcttaaaattagggttttaagtgataattggagtgttaactaggatta 365  Q
    ||||||| ||||  ||||| ||| | ||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  7841382 gatctaacggtctggattgattgacacctaaaaatcttagaattagggttttaagtggtaattagagtgttaactaggatta 7841301  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 21820154 - 21820214
Alignment:
Q  304 ttggcgcctaaaaatcttaaaattagggttttaagtgataattggagtgttaactaggatta 365  Q
    ||||||||||||||| | | ||||| ||||||||||| ||||||||||||||| ||||||||    
T  21820154 ttggcgcctaaaaatgt-agaattatggttttaagtgttaattggagtgttaattaggatta 21820214  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 44663658 - 44663723
Alignment:
Q  299 attgtttggcgcctaaaaatcttaaaattagggttttaagtgataattggagtgttaactaggatta 365  Q
    |||| ||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||    
T  44663658 attgattggcgcctaaaa-tcatagaattagggttttaagtggtaattggagtgttaactaggatta 44663723  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 19962104 - 19962047
Alignment:
Q  304 ttggcgcctaaaaatcttaaaattagggttttaagtgataattggagtgttaactagga 362  Q
    ||||||||||||||  | ||||||||||||||||||| ||||| |||||||||||||||    
T  19962104 ttggcgcctaaaaaagt-aaaattagggttttaagtgttaatttgagtgttaactagga 19962047  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 35349046 - 35349005
Alignment:
Q  324 aattagggttttaagtgataattggagtgttaactaggatta 365  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  35349046 aattaggattttaagtgttaattggagtgttaactaggatta 35349005  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 4453857 - 4453792
Alignment:
Q  299 attgtttggcgcctaaaaatcttaaaattagggttttaagtgataattggagtgttaactaggatta 365  Q
    |||| ||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||    
T  4453857 attgattggcgcctaaaa-tcatagaattagggttttaagtggtaattggagtgttaactaggatta 4453792  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 365
Target Start/End: Complemental strand, 7161860 - 7161830
Alignment:
Q  335 taagtgataattggagtgttaactaggatta 365  Q
    |||||||||||||||||||||||||||||||    
T  7161860 taagtgataattggagtgttaactaggatta 7161830  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 9208645 - 9208584
Alignment:
Q  304 ttggcgcctaaaaatcttaaaattagggtttta-agtgataattggagtgttaactaggatta 365  Q
    ||||||||||||| | |||  |||||||||||  |||||||||||||||||||||||||||||    
T  9208645 ttggcgcctaaaact-ttaggattagggttttggagtgataattggagtgttaactaggatta 9208584  T

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Target: scaffold0157 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 13893 - 13952
Alignment:
Q  230 ccagcattaagatatgatcaaatggctgatatgataattgtgtctaatgatagagatctaa 290  Q
    ||||||||||||| ||||||| |||||||||||||||||| | |||| |||||||||||||    
T  13893 ccagcattaagatctgatcaa-tggctgatatgataattgcgcctaacgatagagatctaa 13952  T

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Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 10275 - 10210
Alignment:
Q  298 gattgtttggcgcctaaaaatcttaaaattagggttttaagtgataattggagtgttaactaggatt 364  Q
    ||||||||||||||||||||  | | |||||||||||  |||| |||||||||||||||||||||||    
T  10275 gattgtttggcgcctaaaaaagt-agaattagggtttggagtgttaattggagtgttaactaggatt 10210  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 26044778 - 26044836
Alignment:
Q  253 ggctgatatgataattgtgtctaatgatagagatctaatggtcatgattgtttggcgcc 311  Q
    |||| |||||| ||||| | |||| ||||||||||||| || |||||||||||||||||    
T  26044778 ggcttatatgaaaattgcgcctaaagatagagatctaacggccatgattgtttggcgcc 26044836  T

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