View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_high_10 (Length: 332)
Name: NF12160_high_10
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 59 - 318
Target Start/End: Complemental strand, 55912031 - 55911772
Alignment:
| Q |
59 |
aatatctaaatgataaaatttgattgaacagtctacataaaacacttgcatagaatgcttaaatagtccactacaaatctacaatggtattgccactaat |
158 |
Q |
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| T |
55912031 |
aatatctaaatgataaaatttgattgaacagtctacataaaacacttgcatagaatgcttaaatagtccactacaaatctacaatggtattgccactaat |
55911932 |
T |
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| Q |
159 |
attgccgtgaagatatgaatgatcatgtttcatagaaaaataaaatatgaacaagtgtaaccttcaccaacaagccatcgtttactctataaaatctcaa |
258 |
Q |
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| T |
55911931 |
attgccgtgaagatatgaatgatcatgtttcatagaaaaataaaatatgaacaagtgtaaccttcaccaacaagccatcgtttactcaataaaatctcaa |
55911832 |
T |
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| Q |
259 |
accaacaagtagcattagtatcaaaaactacaaattcagcaattcaaacaggaataaatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55911831 |
accaacaagtagcattagtatcaaaaactacaaattcagcaattcaaacaggaataaatg |
55911772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 7214300 - 7214256
Alignment:
| Q |
17 |
gtaccaaaatattaagaacttagtgtgagattacagtactccaat |
61 |
Q |
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| T |
7214300 |
gtaccaaaatagtaagagctttgtgtgagtttacagtactccaat |
7214256 |
T |
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