View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_high_2 (Length: 557)
Name: NF12160_high_2
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 9234655 - 9234363
Alignment:
| Q |
18 |
ataagatgataaatagttgggacaaagacaagacag--tataaaacaaagtaaatatcatttattcaaatctagagaaacacaggaacacaccatgaaaa |
115 |
Q |
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| T |
9234655 |
ataagatgataaatagttgggacaaagacaagacagagtatacaacaaagtaaatatcatttattcaaatctagagaaacacaggaacacaccatgaaaa |
9234556 |
T |
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| Q |
116 |
actcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaacttatggaatgaaatttcacatcagatgtccaccattcaaca |
215 |
Q |
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| T |
9234555 |
actcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcatggaatgaaatttcacatcacatgtccaccattcagca |
9234456 |
T |
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| Q |
216 |
tgtatatatatgctgacatggagcaaagttccatacataactgatgtagatagctataccctccatatgaataaccatttccaaagacttact |
308 |
Q |
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| T |
9234455 |
tgtatatatatgctgacatggagtaaagttccatacataactgatgtagatagctataccctccatatgaataaccatttccaaagacttact |
9234363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 369 - 542
Target Start/End: Complemental strand, 9234302 - 9234129
Alignment:
| Q |
369 |
ttttcaacttcgacatgcaaaatggtagacccgatcccaacaactagaaccattaatttaatctctctttttcatcaattccattcacacaccctccatt |
468 |
Q |
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| T |
9234302 |
ttttcaacctcgacatgcaaaatggtagacccgatcccaacaactagaaccattaatttaatctctctttttcatcaattccattcacacaccctccatt |
9234203 |
T |
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| Q |
469 |
gttttaagcttcagatttctcaactggaacttcttctgctgctggagcttccactgactcaactggtttaacat |
542 |
Q |
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| T |
9234202 |
gttttaagcttcagatttctcaactggaacttcttctgctgctggagcttccactgactcaactggtttaacat |
9234129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 9246024 - 9245940
Alignment:
| Q |
87 |
tagagaaacacaggaacacaccatgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacac |
171 |
Q |
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|||||||||||| ||||||| | || ||| ||||| ||||||||||||||||||| |||||||||| |||| |||||||||||| |
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| T |
9246024 |
tagagaaacacaataacacactacgacaaagtcatggaaccttcccaagaaccatatcaccttatagttgatgacttcaatacac |
9245940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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