View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_high_3 (Length: 483)
Name: NF12160_high_3
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 49244829 - 49245276
Alignment:
| Q |
20 |
cattaaggaacttgaggaaaagaagaaaatgttggaggagatgaaggaatcaaaatcaaagaaacatgttgaaggggtttttaatttgttggttccctgt |
119 |
Q |
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| T |
49244829 |
cattaaggaacttgaggaaaagaagaaaattttggaggagatgaaggaatcaaaatcaaagaaacatgttgaaaggggttttaatttgttggttccctgt |
49244928 |
T |
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| Q |
120 |
cgtaataggaatcccaattgctctgttacggttactggttcaagcaatgtggctttctttgggattgaatctgtggctaaacctggtttgattactgtta |
219 |
Q |
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| T |
49244929 |
cgtaataggaatcccaattgctctgttacggttactggttcaagcaatgtggctttctttgggattgaatctgtggctaaacctgggttgattactgtta |
49245028 |
T |
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| Q |
220 |
ttttgaaggtgttcttgaagaatgaagctgaggttttagctgctaatgtttctgttaatgatgggaatttgatcttggcaatcactgctttggttcaaaa |
319 |
Q |
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| T |
49245029 |
ttttgaaggtgttcttgaagaatgaagctgaggttttagctgctaatgtttctgttaatgatgggaatttgatcttggcaatcactgctttggttcaaaa |
49245128 |
T |
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| Q |
320 |
tggtgctgttattgagaagattaagagagagattatgagtttgtaggttcaattgatgaataattggtttgtttttctttgggatttaaaggttgattat |
419 |
Q |
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| T |
49245129 |
tggtgctgttattgagaagattaagagagagattatgagtttgtaggttcaattgatgaataattggtttgtttttctttgggatttaaaggttgattat |
49245228 |
T |
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| Q |
420 |
aattaatcatggtgattgatgttaagaccatggtgacatggtacatat |
467 |
Q |
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| T |
49245229 |
aattaatcattgtgattgatgttaagaccatggtgacatggtacatat |
49245276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 193 - 321
Target Start/End: Original strand, 49059376 - 49059504
Alignment:
| Q |
193 |
tggctaaacctggtttgattactgttattttgaaggtgttcttgaagaatgaagctgaggttttagctgctaatgtttctgttaatgatgggaatttgat |
292 |
Q |
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| T |
49059376 |
tggctagacctggtttggctactgcgattttgaagatatttgtggacaatcaagctgagattttagtggcaaatgtctctgttaatgatggaaatttgat |
49059475 |
T |
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| Q |
293 |
cttggcaatcactgctttggttcaaaatg |
321 |
Q |
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| T |
49059476 |
cttggcaatcactgcattggttcaaaatg |
49059504 |
T |
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