View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_high_8 (Length: 361)
Name: NF12160_high_8
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 45037226 - 45036907
Alignment:
| Q |
19 |
gaacatgccagcattgaagtaaagtgaaggaggttgacccatttcctttggccaatgcactttttctggacattgttgacaataaccgattttgtattgt |
118 |
Q |
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| T |
45037226 |
gaacatgccagcattgaagtaaagtgaaggaggttgacccatttcctttggccaatgaactttttctggacattgttgacaataaccgattttgtattgt |
45037127 |
T |
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| Q |
119 |
ggtgtgtgactccaagttctctcgcaaaaacaatccataacagcgtagaaatgaccatctggtagatcaaagagatggtctatgttttcataaacttgaa |
218 |
Q |
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| T |
45037126 |
ggtgtgtgactccaagttctctcgcaaaaacaatccataacagcgtagaaatgaccatctggtagatcaaagagatggtctatgttttcataaacttgaa |
45037027 |
T |
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| Q |
219 |
tgtctccgtccaagtatatcatcttgctgtattccacaaactgtaacataataaatatagctcaaataagtacactttccttcctagttttatggtgcac |
318 |
Q |
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| T |
45037026 |
tgtctccgtccaagtatatcatcttgctgtattccacaaactgtaacataataaatatagctcaaataagtacactttccttcctagttttatggtgcac |
45036927 |
T |
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| Q |
319 |
agatttattttatgaatcat |
338 |
Q |
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| T |
45036926 |
agatttattttatgaatcat |
45036907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 45944411 - 45944585
Alignment:
| Q |
86 |
ggacattgttgacaataaccgattttgtattgtggtgtgtgactccaagttctctcgcaaaaacaatccataacagcgtagaaatgaccatctggtagat |
185 |
Q |
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| T |
45944411 |
ggacattgttgacagtatccaatcttatactgaggagtgtgactccaagtcttttcacagaaacagtccatcacagcatagaagtaatcatcaggcagat |
45944510 |
T |
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| Q |
186 |
caaagagatggtctatgttttcataaacttgaatgtctccgtccaagtatatcatcttgctgtattccacaaact |
260 |
Q |
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| T |
45944511 |
caaatagatgatcaatgttttcaaacacttggatgtcaccatctaagtagatcatcttgctgtactcctcaaact |
45944585 |
T |
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