View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12160_low_1 (Length: 702)

Name: NF12160_low_1
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12160_low_1
NF12160_low_1
[»] chr8 (4 HSPs)
chr8 (8-686)||(26494633-26495311)
chr8 (241-445)||(26506901-26507105)
chr8 (539-672)||(26506692-26506825)
chr8 (329-426)||(41127308-41127405)
[»] chr5 (1 HSPs)
chr5 (311-426)||(15176287-15176402)
[»] chr2 (13 HSPs)
chr2 (481-594)||(2327134-2327247)
chr2 (310-426)||(2330996-2331112)
chr2 (310-423)||(2303729-2303842)
chr2 (310-426)||(2327281-2327397)
chr2 (539-603)||(2330840-2330904)
chr2 (481-585)||(2351164-2351268)
chr2 (310-426)||(2310444-2310560)
chr2 (327-426)||(2321428-2321527)
chr2 (481-603)||(2303570-2303692)
chr2 (310-426)||(2294113-2294229)
chr2 (551-603)||(2321272-2321324)
chr2 (241-290)||(2294246-2294295)
chr2 (241-290)||(2310577-2310626)
[»] chr4 (1 HSPs)
chr4 (380-426)||(55017087-55017133)


Alignment Details
Target: chr8 (Bit Score: 639; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 8 - 686
Target Start/End: Complemental strand, 26495311 - 26494633
Alignment:
Q  8 acacatatatttacaccatagttgattgatgttgtaaactaaccttacattgctatatttgtatcattgctctatggcatcaatgtatcatttatatcta 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26495311 acacatatatttacaccatggttgattgatgttgtaaactaaccatacattgctatatttgtatcattgctctatggcatcaatgtgtcatttatatcta 26495212  T
Q  108 aatgtgtttgcaccattgttttatggttgatatactttttgttttactttgcaatggtgcacaatcatgatcatgtcctataaaatgtctccaattgttg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26495211 aatgtgtttgcaccattgttttatggttgatatactttttgttttactttgcaatggtgcacaatcctgatcatgtcctataaaatgtctccaattgttg 26495112  T
Q  208 aatctagttcctgagagaaatttgattttctagtggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacattacttcctggtaatgaa 307  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26495111 aatctaattcctgagagaaatttgagcttctagtggatatttcatcaccattgtaaattcctgtttttctgtcaaatcaacattacttcctggtaatgaa 26495012  T
Q  308 gtcttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26495011 gtcttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacg 26494912  T
Q  408 gcatcatctttatctcttttatacccctaacatcaaatgcgtcaaattcgtttctattttttgcatcttttagaaacctctctggcttaaacaccgtagg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494911 gcatcatctttatctcttttatacccctaacatcaaatgcgtcaaattcgtttctattttttgcatcttttagaaacctctctggcttaaacaccgtagg 26494812  T
Q  508 atcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtc 607  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494811 atcctcccaaaccgttggatctaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtc 26494712  T
Q  608 actacacgtggaattgtgtagtgagttggaggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatt 686  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494711 actacacgtggaattgtgtagtgagtaggaggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatt 26494633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 241 - 445
Target Start/End: Complemental strand, 26507105 - 26506901
Alignment:
Q  241 tggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacattacttcctggtaatgaagtcttccactcaaagttcaaaaccaaattagca 340  Q
    |||||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||| |      
T  26507105 tggatatttcatcaccatagtaaattcctgtttttctgacaaatcaacattactttctggtaatgaagtcttccattcaaagttccaaactaaatttgtc 26507006  T
Q  341 acaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggcatcatctttatctcttttatacccctaacat 440  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||  |||  ||||||    
T  26507005 acaaagtactctacatggagcattgccaagttataggcaggacaaatcctccttcctgctccaaatggcatcatctttatctcattttgacctgtaacat 26506906  T
Q  441 caaat 445  Q
    |||||    
T  26506905 caaat 26506901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 539 - 672
Target Start/End: Complemental strand, 26506825 - 26506692
Alignment:
Q  539 tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagttggag 638  Q
    ||||||||||||||||| || |||||||||||||||||||||||||| || ||||  | |||||| |||||| || ||||||||  ||||||||  ||||    
T  26506825 tctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggtcactgcatgtggaattaagtagtgagaaggag 26506726  T
Q  639 gatgacgccttaacccttccaaaatcacagcctt 672  Q
    | || |||||||||||||| |||||||| |||||    
T  26506725 ggtggcgccttaacccttctaaaatcactgcctt 26506692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 41127405 - 41127308
Alignment:
Q  329 accaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggcatcatctttatctcttt 426  Q
    ||||||||||| ||||||||||| ||||||||||  || || |||||  |||||||||| ||||||||  ||||||||||||||||||||||||||||    
T  41127405 accaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatctttatctcttt 41127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 311 - 426
Target Start/End: Original strand, 15176287 - 15176402
Alignment:
Q  311 ttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggca 410  Q
    ||||||||||| |||||||| ||||| |||||||||||||| || || | || ||| ||   |||| ||||||| || ||||||||||||||||| ||||    
T  15176287 ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca 15176386  T
Q  411 tcatctttatctcttt 426  Q
    ||||||||||||||||    
T  15176387 tcatctttatctcttt 15176402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 481 - 594
Target Start/End: Complemental strand, 2327247 - 2327134
Alignment:
Q  481 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 580  Q
    |||||| |||||||||||| || | ||||||||||||||    ||||  || || || ||||||||||| |||||||| ||||||||||||||||||||     
T  2327247 aaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaa 2327148  T
Q  581 taaccattcaaaac 594  Q
    ||||||||||||||    
T  2327147 taaccattcaaaac 2327134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 310 - 426
Target Start/End: Complemental strand, 2331112 - 2330996
Alignment:
Q  310 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 409  Q
    |||||| || || ||| ||||||||||||| ||||| ||||| ||||| ||||  || || |||||  |||||||||| |||||||| |||||||| |||    
T  2331112 cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaatggc 2331013  T
Q  410 atcatctttatctcttt 426  Q
    |||||||||||||||||    
T  2331012 atcatctttatctcttt 2330996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 423
Target Start/End: Complemental strand, 2303842 - 2303729
Alignment:
Q  310 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 409  Q
    |||||| || || ||| ||||||||||||| ||||| ||||||||||||||||  || || |||   ||||||||||| |||||  | ||| ||||||||    
T  2303842 cttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaacggc 2303743  T
Q  410 atcatctttatctc 423  Q
    ||||||||||||||    
T  2303742 atcatctttatctc 2303729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 310 - 426
Target Start/End: Complemental strand, 2327397 - 2327281
Alignment:
Q  310 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 409  Q
    |||||| || || ||| ||||||||||||| ||||| ||||| |||||||| |  || || |||||  | |||||||| ||||| || ||||||||||||    
T  2327397 cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaaacggc 2327298  T
Q  410 atcatctttatctcttt 426  Q
    |||||||| ||||||||    
T  2327297 atcatcttgatctcttt 2327281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 2330904 - 2330840
Alignment:
Q  539 tctgccaccataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctc 603  Q
    ||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||| | ||||||    
T  2330904 tctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctc 2330840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 481 - 585
Target Start/End: Complemental strand, 2351268 - 2351164
Alignment:
Q  481 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 580  Q
    ||||||||||||||||||| || | ||||||||||||||    ||||   | || || ||||||||||||||||| || ||||||||||||||||||||     
T  2351268 aaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttaggcaccaaa 2351169  T
Q  581 taacc 585  Q
    |||||    
T  2351168 taacc 2351164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 426
Target Start/End: Complemental strand, 2310560 - 2310444
Alignment:
Q  310 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 409  Q
    |||||| || || ||| ||||||||||||| ||||| ||||| ||||||||||  || || |||    | |||||||| || || || ||||||||||||    
T  2310560 cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggc 2310461  T
Q  410 atcatctttatctcttt 426  Q
    |||||||||||||||||    
T  2310460 atcatctttatctcttt 2310444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 327 - 426
Target Start/End: Complemental strand, 2321527 - 2321428
Alignment:
Q  327 aaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggcatcatctttatctcttt 426  Q
    ||||||| ||||| ||||| ||||| ||||||||||  || || |||    | |||||||| ||||| || |||||||||||||||||||||||||||||    
T  2321527 aaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctcttt 2321428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 481 - 603
Target Start/End: Complemental strand, 2303692 - 2303570
Alignment:
Q  481 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatttaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 580  Q
    |||||| |||||||||||| || | ||||||||||||||    ||||   | || || || |||| ||| |||||||| ||||||||||||||||||||     
T  2303692 aaacctttctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaa 2303593  T
Q  581 taaccattcaaaacaatatcctc 603  Q
    ||||| |||||||| | ||||||    
T  2303592 taaccgttcaaaaccacatcctc 2303570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 426
Target Start/End: Complemental strand, 2294229 - 2294113
Alignment:
Q  310 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 409  Q
    |||||| || || ||| ||||||| ||||| ||||| ||||| ||||||||||  || || |||    | |||||||| || || || ||||||||||||    
T  2294229 cttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggc 2294130  T
Q  410 atcatctttatctcttt 426  Q
    |||||||||||||||||    
T  2294129 atcatctttatctcttt 2294113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 2321324 - 2321272
Alignment:
Q  551 aaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctc 603  Q
    |||||||| |||||||||||||||||||| ||||| |||||||| | ||||||    
T  2321324 aaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctc 2321272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 2294295 - 2294246
Alignment:
Q  241 tggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacat 290  Q
    ||||| |||||||||||| || ||||||||| |||| |||||||||||||    
T  2294295 tggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacat 2294246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 2310626 - 2310577
Alignment:
Q  241 tggatatttcatcaccattgtaaattcttgtttttctgtcaaatcaacat 290  Q
    ||||| |||||||||||| || ||||||||| |||| |||||||||||||    
T  2310626 tggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacat 2310577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 55017133 - 55017087
Alignment:
Q  380 ggacaaatcctcctccctgctccaaacggcatcatctttatctcttt 426  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||    
T  55017133 ggacaaatcctcctcccagcaccaaacggcatcatcttcatctcttt 55017087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University