View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12160_low_10 (Length: 391)

Name: NF12160_low_10
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12160_low_10
NF12160_low_10
[»] chr4 (12 HSPs)
chr4 (18-381)||(5565223-5565586)
chr4 (33-381)||(5605556-5605904)
chr4 (33-263)||(5885886-5886116)
chr4 (32-265)||(3749389-3749622)
chr4 (32-263)||(5858501-5858732)
chr4 (33-263)||(5847671-5847901)
chr4 (32-170)||(5582962-5583100)
chr4 (33-263)||(5894731-5894961)
chr4 (116-263)||(5613627-5613774)
chr4 (22-152)||(5852656-5852786)
chr4 (33-228)||(5553647-5553842)
chr4 (33-170)||(5570755-5570892)
[»] chr8 (1 HSPs)
chr8 (44-166)||(1485703-1485825)
[»] scaffold0454 (1 HSPs)
scaffold0454 (44-166)||(884-1007)


Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 5565223 - 5565586
Alignment:
Q  18 caacccacaatctacaagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5565223 caacccacaatctacaagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagaataatgact 5565322  T
Q  118 gataggttctctagttttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagac 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565323 gataggttctctagttttgaaagggaagaatcaaggggtcctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagac 5565422  T
Q  218 tgctccattcatatccttgagctggtatacttataccatctagatataacatcctaatcttagtcaacttttgaatactgaaaagaccactggaattgtc 317  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5565423 tgctccattcatatccttgagatggtatacttataccatctagatataacatcctaatcttggtcaacttttgaatactgaaaagaccactggaattgtc 5565522  T
Q  318 aaatccaccggatacttcgtttctcaggtcaaggcctataacttgccccttgttatcacaggtt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5565523 aaatccaccggatacttcgtttctcaggtcaaggcctataacttgcccctcgttatcacaggtt 5565586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 33 - 381
Target Start/End: Original strand, 5605556 - 5605904
Alignment:
Q  33 aagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagt 132  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||  || |||||  |||||| |||| ||||||||      
T  5605556 aagattgagggtggttaggtttttaaaattggcaaatgtttctggcactggggatgaaaaattgttcccatcaagaagaatgacagataagttctctaac 5605655  T
Q  133 tttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattcatatc 232  Q
     |||  ||||||||||||||||| ||||||| |||||||  |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5605656 cttgctagggaagaatcaaggggtcctgaaaaaccacagtctgacatacctaattcttgtaggtcacggagcggcaacaaaagactgctccattcatatc 5605755  T
Q  233 cttgagctggtatacttataccatctagatataacatcctaatcttagtcaacttttgaatactgaaaagaccactggaattgtcaaatccaccggatac 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||||||||  |||     
T  5605756 cttgagctggtatacttataccatctagatataacatcctaatcttggtcaacttctgaagactgaaaagaccagtggaattgtcaaatccaccatatat 5605855  T
Q  333 ttcgtttctcaggtcaaggcctataacttgccccttgttatcacaggtt 381  Q
    ||   |  || ||||||||||||||||||||| || |||||||||||||    
T  5605856 ttgtctagtctggtcaaggcctataacttgcctctcgttatcacaggtt 5605904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 33 - 263
Target Start/End: Complemental strand, 5886116 - 5885886
Alignment:
Q  33 aagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagt 132  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||||||| |||||||||||||||    
T  5886116 aagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttctctagt 5886017  T
Q  133 tttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattcatatc 232  Q
    ||||||||||| ||||||||||| ||||| |||| |||| |  ||||||  || ||||| | |||||| | ||| ||||||  | | |||||||||||||    
T  5886016 tttgaaagggaggaatcaaggggtcctgatagactacagttatacatgctcaactcttgcaagtcacgcagcggtaacaaagcattactccattcatatc 5885917  T
Q  233 cttgagctggtatacttataccatctagata 263  Q
    |  ||| || |||||||||||||||||||||    
T  5885916 ccggagatgttatacttataccatctagata 5885886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 32 - 265
Target Start/End: Original strand, 3749389 - 3749622
Alignment:
Q  32 caagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctag 131  Q
    |||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||| ||  || ||||| ||||||||||||||||||||||    
T  3749389 caagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctag 3749488  T
Q  132 ttttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattcatat 231  Q
    | |||  ||||||||||||||||| ||||| | | |||||   |||||||  |||||||| | |||||| ||||||||||||  | ||||| |||||| |    
T  3749489 tcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcttgcaagtcacgcaacggcaacaaagcattgctcaattcatgt 3749588  T
Q  232 ccttgagctggtatacttataccatctagatata 265  Q
    ||| ||| || ||||||||| |||||||||||||    
T  3749589 cctcgagatgttatacttatcccatctagatata 3749622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 32 - 263
Target Start/End: Original strand, 5858501 - 5858732
Alignment:
Q  32 caagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctag 131  Q
    ||||||||||||| |||| |||||||||||| ||||||||||  || ||||||||||||||||  || ||| ||||| ||||||||||||||||||||||    
T  5858501 caagactgagggtagtcaagtttttaaaatttgcaaatgtttcaggaactggggatgaaaaatagttctcatcaagaataatgactgataggttctctag 5858600  T
Q  132 ttttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattcatat 231  Q
    |||||  ||||||||||||||||||||| | |||||||||   |||||||  |||||||||||||  || ||||||||||||  | || ||||||||| |    
T  5858601 ttttgttagggaagaatcaaggggacctaatagaccacaggaagacatgctcaattcttgtaggtttcgcaacggcaacaaagcattgatccattcatgt 5858700  T
Q  232 ccttgagctggtatacttataccatctagata 263  Q
    || | ||||| |||||||| || |||||||||    
T  5858701 cccttagctgatatacttacactatctagata 5858732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 33 - 263
Target Start/End: Complemental strand, 5847901 - 5847671
Alignment:
Q  33 aagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagt 132  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |||||||||  |||||| |  ||||||||||||    
T  5847901 aagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaagttgttctcaccaagaacaatgaccgtcaggttctctagt 5847802  T
Q  133 tttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattcatatc 232  Q
     |||  ||||||||||||||||| ||||| ||| ||||    |||||||  || | ||| |||||||| || |||||||||  | |||||||||||| ||    
T  5847801 cttgttagggaagaatcaaggggtcctgatagatcacaatcagacatgctcaacttttgcaggtcacgcaaaggcaacaaagcattgctccattcatgtc 5847702  T
Q  233 cttgagctggtatacttataccatctagata 263  Q
    |  ||| || |||||||||||||||||||||    
T  5847701 cccgagatgttatacttataccatctagata 5847671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 170
Target Start/End: Complemental strand, 5583100 - 5582962
Alignment:
Q  32 caagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctag 131  Q
    |||||||||||||||| |  ||||| ||||||| |||||||||||||||||||||||||||||| ||  || ||||| |||||||||||||||||| |||    
T  5583100 caagactgagggtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttcccatcaagaataatgactgataggttctttag 5583001  T
Q  132 ttttgaaagggaagaatcaaggggacctgaaagaccaca 170  Q
    | |||  ||||||||||||||||||||||| ||| ||||    
T  5583000 tcttgttagggaagaatcaaggggacctgatagatcaca 5582962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 33 - 263
Target Start/End: Complemental strand, 5894961 - 5894731
Alignment:
Q  33 aagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagt 132  Q
    |||| |||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||| ||   |  |||| |||||||||| ||||||| ||||    
T  5894961 aagattgagggtggttaggtttttaaaattggcaaatgtttctggcaatgaggatgaaaaattgtttcgataaagaataatgactgacaggttctgtagt 5894862  T
Q  133 tttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattcatatc 232  Q
     |||| ||||||||||||||||  ||||| | | ||||  | |||||||  ||||||||||||||||| || || | ||||  | ||||||||| || ||    
T  5894861 cttgatagggaagaatcaagggatcctgacaaatcacaattagacatgctcaattcttgtaggtcacgcaaaggtatcaaagcattgctccatttatgtc 5894762  T
Q  233 cttgagctggtatacttataccatctagata 263  Q
      |||| || |||| ||||||||||||||||    
T  5894761 tctgagatgttatagttataccatctagata 5894731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 263
Target Start/End: Original strand, 5613627 - 5613774
Alignment:
Q  116 ctgataggttctctagttttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaag 215  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| |||  |||| | |||||||  | |||||||||||| |  || |||||||||      
T  5613627 ctgataggttctctagttttgaaagggaagaatcaagaggtcctgatagattacagttagacatgctcagttcttgtaggtcgctcaaaggcaacaaagc 5613726  T
Q  216 actgctccattcatatccttgagctggtatacttataccatctagata 263  Q
    | || ||||||||| ||| |||| || |||||||||||||||||||||    
T  5613727 attgatccattcatgtccctgagatgttatacttataccatctagata 5613774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 5852786 - 5852656
Alignment:
Q  22 ccacaatctacaagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgata 121  Q
    |||||||||  |||||| |||||||||||||||| |||||| |||||||||| ||| || ||||| |||||||| ||   | ||||| ||||||||||||    
T  5852786 ccacaatctgaaagactaagggtggtcaggttttgaaaattagcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgactgata 5852687  T
Q  122 ggttctctagttttgaaagggaagaatcaag 152  Q
    |||||  ||||||||| ||||||||||||||    
T  5852686 ggttccttagttttgatagggaagaatcaag 5852656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 228
Target Start/End: Original strand, 5553647 - 5553842
Alignment:
Q  33 aagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagt 132  Q
    |||||| |||||||||||||||| ||||||||||||||||| ||| || ||||| |||||||| ||   | ||||| ||||||| |||||||| | ||||    
T  5553647 aagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagt 5553746  T
Q  133 tttgaaagggaagaatcaaggggacctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaaagactgctccattca 228  Q
    ||||| ||||||||||| || || ||||  ||| ||||| |  ||||||  || |||||||| ||||  | ||||||||||  | |||||||||||    
T  5553747 tttgatagggaagaatctagtggccctgctagatcacagttatacatgctcaactcttgtagttcacacagcggcaacaaagcattgctccattca 5553842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 5570892 - 5570755
Alignment:
Q  33 aagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagt 132  Q
    ||||||||||||||| || ||||||||||||| |||||||| ||||||| ||||||| ||||  ||  || ||||| |||||||||||||||||| ||||    
T  5570892 aagactgagggtggttagttttttaaaattggaaaatgtttctggcactagggatgagaaatagttcccatcaagaataatgactgataggttctttagt 5570793  T
Q  133 tttgaaagggaagaatcaaggggacctgaaagaccaca 170  Q
     |||  |||||||||  |||||| ||||| ||| ||||    
T  5570792 cttgttagggaagaagaaaggggtcctgatagatcaca 5570755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 1485703 - 1485825
Alignment:
Q  44 tggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaaggga 143  Q
    ||||||||||||||||||||| |||||||| ||| | ||| ||||||| ||| || | | ||||| ||||||  | ||||||||||||||||||||||||    
T  1485703 tggtcaggtttttaaaattggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggga 1485802  T
Q  144 agaatcaaggggacctgaaagac 166  Q
     ||||||| ||| ||||| ||||    
T  1485803 ggaatcaacgggtcctgatagac 1485825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 884 - 1007
Alignment:
Q  44 tggtcaggtttttaaaatt-ggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagattaatgactgataggttctctagttttgaaaggg 142  Q
    ||||||||||||||||||| || |||||||| ||| | ||| ||||||| ||| || | | ||||| ||||||  | |||||||||||||||||||||||    
T  884 tggtcaggtttttaaaattaggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggg 983  T
Q  143 aagaatcaaggggacctgaaagac 166  Q
    | ||||||| ||| ||||| ||||    
T  984 aggaatcaacgggtcctgatagac 1007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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