View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12160_low_13 (Length: 358)

Name: NF12160_low_13
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12160_low_13
NF12160_low_13
[»] chr6 (3 HSPs)
chr6 (124-189)||(27141890-27141955)
chr6 (16-50)||(28704097-28704131)
chr6 (16-53)||(26907353-26907390)
[»] chr1 (1 HSPs)
chr1 (16-61)||(2871785-2871830)
[»] chr8 (1 HSPs)
chr8 (227-282)||(41821342-41821397)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 27141955 - 27141890
Alignment:
Q  124 tccatattattcataaactctgagacaacaattaaaccaccatacttaggctttaaattaagaata 189  Q
    ||||||||||||||| ||| ||| |||||||| ||||||||||| |||||||||||||||| ||||    
T  27141955 tccatattattcatatactgtgaaacaacaataaaaccaccatatttaggctttaaattaaaaata 27141890  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 28704097 - 28704131
Alignment:
Q  16 ttgatcccattgagaaaacaactcaatcacttcat 50  Q
    |||||||||||||||||||||||||||||||||||    
T  28704097 ttgatcccattgagaaaacaactcaatcacttcat 28704131  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 26907353 - 26907390
Alignment:
Q  16 ttgatcccattgagaaaacaactcaatcacttcatctt 53  Q
    |||||||||||||||||||| |||||||||||||||||    
T  26907353 ttgatcccattgagaaaacacctcaatcacttcatctt 26907390  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 2871785 - 2871830
Alignment:
Q  16 ttgatcccattgagaaaacaactcaatcacttcatcttagtaaatt 61  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  2871785 ttgatccaattgagaaaacaactcaatcacttcatcttagtaaatt 2871830  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 41821342 - 41821397
Alignment:
Q  227 cttttttcatgttcaataatgatataagagcagctattcttgtagacaacaagggt 282  Q
    |||||||| |||| | |||||||| ||||||||||||||||| |||||||||||||    
T  41821342 cttttttcctgtttactaatgatagaagagcagctattcttgcagacaacaagggt 41821397  T

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