View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12160_low_15 (Length: 311)

Name: NF12160_low_15
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12160_low_15
NF12160_low_15
[»] chr1 (14 HSPs)
chr1 (96-212)||(7214227-7214345)
chr1 (18-57)||(7214147-7214186)
chr1 (68-99)||(34032003-34032034)
chr1 (18-99)||(10842737-10842820)
chr1 (18-99)||(48025365-48025449)
chr1 (67-99)||(2610992-2611024)
chr1 (68-96)||(5317494-5317522)
chr1 (67-99)||(12002202-12002234)
chr1 (67-99)||(13408248-13408280)
chr1 (67-99)||(28200136-28200168)
chr1 (67-99)||(34047399-34047431)
chr1 (67-99)||(43358364-43358396)
chr1 (67-99)||(50094183-50094215)
chr1 (67-99)||(52125048-52125080)
[»] chr7 (6 HSPs)
chr7 (67-99)||(44453340-44453372)
chr7 (67-99)||(45948794-45948826)
chr7 (67-99)||(22297954-22297986)
chr7 (67-99)||(30833257-30833289)
chr7 (67-99)||(37815931-37815963)
chr7 (67-99)||(40339415-40339447)
[»] scaffold0332 (1 HSPs)
scaffold0332 (68-99)||(3735-3766)
[»] chr6 (4 HSPs)
chr6 (68-99)||(34439322-34439353)
chr6 (67-99)||(29927164-29927196)
chr6 (67-99)||(32429242-32429274)
chr6 (67-99)||(34519290-34519322)
[»] chr4 (5 HSPs)
chr4 (67-98)||(46392229-46392260)
chr4 (67-99)||(44572036-44572068)
chr4 (67-99)||(47321350-47321382)
chr4 (67-99)||(50203034-50203066)
chr4 (67-99)||(54042100-54042132)
[»] chr3 (11 HSPs)
chr3 (67-98)||(36729969-36730000)
chr3 (69-99)||(50646274-50646304)
chr3 (67-99)||(4476276-4476308)
chr3 (71-99)||(27067809-27067837)
chr3 (67-99)||(31290888-31290920)
chr3 (67-99)||(36461012-36461044)
chr3 (67-99)||(37225759-37225791)
chr3 (67-99)||(42740429-42740461)
chr3 (67-99)||(50088478-50088510)
chr3 (71-99)||(50646053-50646081)
chr3 (67-99)||(51397966-51397998)
[»] chr5 (3 HSPs)
chr5 (67-112)||(21375815-21375861)
chr5 (67-99)||(24436454-24436486)
chr5 (67-99)||(33693937-33693969)
[»] chr2 (7 HSPs)
chr2 (68-98)||(4051680-4051710)
chr2 (67-99)||(1422105-1422137)
chr2 (67-99)||(11188655-11188687)
chr2 (67-99)||(12342300-12342332)
chr2 (67-99)||(32228175-32228207)
chr2 (67-99)||(40987420-40987452)
chr2 (67-99)||(42970095-42970127)
[»] chr8 (3 HSPs)
chr8 (67-99)||(8382401-8382433)
chr8 (67-99)||(9022602-9022634)
chr8 (67-99)||(14541911-14541943)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 7214227 - 7214345
Alignment:
Q  96 ggagaatagttatttattctactaga--aattggagtactgtaaactcacacaaagctcttactattttggtacaatacgcaaagatgatattggccaat 193  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7214227 ggagtatagttatttattctactagagaaattggagtactgtaaactcacacaaagctcttactattttggtacgatacgcaaagatgatattggccaat 7214326  T
Q  194 agtatttcacaggttctgc 212  Q
    ||||||| || ||||||||    
T  7214327 agtattttactggttctgc 7214345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 7214147 - 7214186
Alignment:
Q  18 attattgcattgaaaacaagtgacattcattttgaaacac 57  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  7214147 attattgcattgaaaacaagtgacatttattttaaaacac 7214186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 34032034 - 34032003
Alignment:
Q  68 ctaaaacgacactcattttaaaacggaaggag 99  Q
    ||||||||||||||||||||||||||||||||    
T  34032034 ctaaaacgacactcattttaaaacggaaggag 34032003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 10842820 - 10842737
Alignment:
Q  18 attattgcattgaaaac---aagtgacattcattttgaaacacannnnnnnngctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||   |||||||||||||||||||| | |        ||||||||||||||||||||||||| |||||||    
T  10842820 attattgcattgaaaactgaaagtgacattcattttgaaata-atttttttggctaaaacgacactcattttaaaacagaaggag 10842737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 48025365 - 48025449
Alignment:
Q  18 attattgcattgaaaac---aagtgacattcattttgaaacacannnnnnnngctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||| ||||   ||||||||||||||||||||||          |||||||||||||||||||||||||||| ||||    
T  48025365 attattgcattggaaaccgaaagtgacattcattttgaaacaatttttttttgctaaaacgacactcattttaaaacggagggag 48025449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 2610992 - 2611024
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  2610992 gctaaaacgacactcattttaaaacggatggag 2611024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 5317522 - 5317494
Alignment:
Q  68 ctaaaacgacactcattttaaaacggaag 96  Q
    |||||||||||||||||||||||||||||    
T  5317522 ctaaaacgacactcattttaaaacggaag 5317494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 12002234 - 12002202
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  12002234 gctaaaacgacactcattttaaaacggagggag 12002202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 13408280 - 13408248
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  13408280 gctaaaacgacactcattttaaaacggagggag 13408248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 28200168 - 28200136
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||| ||||||||||||||||||||||||||    
T  28200168 gctaaagcgacactcattttaaaacggaaggag 28200136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 34047399 - 34047431
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  34047399 gctaaaacgacactcattttaaaacggatggag 34047431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 43358364 - 43358396
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  43358364 gctaaaacgacactcattttaaaacggagggag 43358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 50094215 - 50094183
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  50094215 gctaaaacgacactcattttaaaacggatggag 50094183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 52125080 - 52125048
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  52125080 gctaaaacgacactcattttaaaacggatggag 52125048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 44453340 - 44453372
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||||||||    
T  44453340 gctaaaacgacactcattttaaaacggaaggag 44453372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 45948794 - 45948826
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||||||||    
T  45948794 gctaaaacgacactcattttaaaacggaaggag 45948826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 22297986 - 22297954
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  22297986 gctaaaacgacactcattttaaaacggatggag 22297954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 30833257 - 30833289
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||| ||||||||||||||||||||||||||    
T  30833257 gctaaagcgacactcattttaaaacggaaggag 30833289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 37815931 - 37815963
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  37815931 gctaaaacgacactcattttaaaacggagggag 37815963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 40339447 - 40339415
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  40339447 gctaaaacgacactcattttaaaacggagggag 40339415  T

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Target: scaffold0332 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 3766 - 3735
Alignment:
Q  68 ctaaaacgacactcattttaaaacggaaggag 99  Q
    ||||||||||||||||||||||||||||||||    
T  3766 ctaaaacgacactcattttaaaacggaaggag 3735  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 99
Target Start/End: Complemental strand, 34439353 - 34439322
Alignment:
Q  68 ctaaaacgacactcattttaaaacggaaggag 99  Q
    ||||||||||||||||||||||||||||||||    
T  34439353 ctaaaacgacactcattttaaaacggaaggag 34439322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 29927196 - 29927164
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||| ||||||||||||    
T  29927196 gctaaaacgacactcattttgaaacggaaggag 29927164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 32429274 - 32429242
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  32429274 gctaaaacgacactcattttaaaacggatggag 32429242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 34519290 - 34519322
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  34519290 gctaaaacgacactcattttaaaacggatggag 34519322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 98
Target Start/End: Original strand, 46392229 - 46392260
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaagga 98  Q
    ||||||||||||||||||||||||||||||||    
T  46392229 gctaaaacgacactcattttaaaacggaagga 46392260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 44572036 - 44572068
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  44572036 gctaaaacgacactcattttaaaacggagggag 44572068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 47321350 - 47321382
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  47321350 gctaaaacgacactcattttaaaacggagggag 47321382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 50203066 - 50203034
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  50203066 gctaaaacgacactcattttaaaacggatggag 50203034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 54042132 - 54042100
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  54042132 gctaaaacgacactcattttaaaacggatggag 54042100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 98
Target Start/End: Original strand, 36729969 - 36730000
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaagga 98  Q
    ||||||||||||||||||||||||||||||||    
T  36729969 gctaaaacgacactcattttaaaacggaagga 36730000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 50646274 - 50646304
Alignment:
Q  69 taaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||||||    
T  50646274 taaaacgacactcattttaaaacggaaggag 50646304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 4476308 - 4476276
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||| ||||||||||||||||||    
T  4476308 gctaaaacgacacttattttaaaacggaaggag 4476276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Original strand, 27067809 - 27067837
Alignment:
Q  71 aaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||||    
T  27067809 aaacgacactcattttaaaacggaaggag 27067837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 31290920 - 31290888
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  31290920 gctaaaacgacactcattttaaaacggagggag 31290888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 36461012 - 36461044
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||| ||||||||||||||||||||||||||    
T  36461012 gctaaagcgacactcattttaaaacggaaggag 36461044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 37225759 - 37225791
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  37225759 gctaaaacgacactcattttaaaacggagggag 37225791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 42740429 - 42740461
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||| ||||||||||||||||||    
T  42740429 gctaaaacgacacttattttaaaacggaaggag 42740461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 50088478 - 50088510
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||| ||||||||||||    
T  50088478 gctaaaacgacactcattttgaaacggaaggag 50088510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 50646081 - 50646053
Alignment:
Q  71 aaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||||    
T  50646081 aaacgacactcattttaaaacggaaggag 50646053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 51397998 - 51397966
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  51397998 gctaaaacgacactcattttaaaacggatggag 51397966  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 21375815 - 21375861
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag-aatagttatttat 112  Q
    |||||||||||||||||||| |||||||||||| |||| ||||||||    
T  21375815 gctaaaacgacactcattttgaaacggaaggagtaatatttatttat 21375861  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 24436486 - 24436454
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  24436486 gctaaaacgacactcattttaaaacggagggag 24436454  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 33693937 - 33693969
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||| ||||||||||||||||||    
T  33693937 gctaaaacgacacttattttaaaacggaaggag 33693969  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 98
Target Start/End: Complemental strand, 4051710 - 4051680
Alignment:
Q  68 ctaaaacgacactcattttaaaacggaagga 98  Q
    |||||||||||||||||||||||||||||||    
T  4051710 ctaaaacgacactcattttaaaacggaagga 4051680  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 1422137 - 1422105
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  1422137 gctaaaacgacactcattttaaaacggacggag 1422105  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 11188655 - 11188687
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    ||||||| |||||||||||||||||||||||||    
T  11188655 gctaaaatgacactcattttaaaacggaaggag 11188687  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 12342300 - 12342332
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  12342300 gctaaaacgacactcattttaaaacggagggag 12342332  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 32228175 - 32228207
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  32228175 gctaaaacgacactcattttaaaacggatggag 32228207  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 40987420 - 40987452
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  40987420 gctaaaacgacactcattttaaaacggatggag 40987452  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 42970095 - 42970127
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||| ||||||||||||||||||    
T  42970095 gctaaaacgacacttattttaaaacggaaggag 42970127  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 8382433 - 8382401
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  8382433 gctaaaacgacactcattttaaaacggatggag 8382401  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 9022602 - 9022634
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||||||||||||||||||||||||| ||||    
T  9022602 gctaaaacgacactcattttaaaacggagggag 9022634  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 14541911 - 14541943
Alignment:
Q  67 gctaaaacgacactcattttaaaacggaaggag 99  Q
    |||||| ||||||||||||||||||||||||||    
T  14541911 gctaaagcgacactcattttaaaacggaaggag 14541943  T

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