View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_low_16 (Length: 309)
Name: NF12160_low_16
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 49244999 - 49245276
Alignment:
| Q |
16 |
ctgtggctaaacctggtttgattactgttattttgaaggtgttcttgaagaatgaagctgaggttttagctgctaatgtttctgttaatgatgggaattt |
115 |
Q |
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| T |
49244999 |
ctgtggctaaacctgggttgattactgttattttgaaggtgttcttgaagaatgaagctgaggttttagctgctaatgtttctgttaatgatgggaattt |
49245098 |
T |
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| Q |
116 |
gatcttggcaatcactgctttggttcaaaatggtgctgttattgagaagattaagagagagattatgagtttgtaggttcaattgatgaataattggttt |
215 |
Q |
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| T |
49245099 |
gatcttggcaatcactgctttggttcaaaatggtgctgttattgagaagattaagagagagattatgagtttgtaggttcaattgatgaataattggttt |
49245198 |
T |
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| Q |
216 |
gtttttctttgggatttaaaggttgattataattaatcatggtgattgatgttaagaccatggtgacatggtacatat |
293 |
Q |
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| T |
49245199 |
gtttttctttgggatttaaaggttgattataattaatcattgtgattgatgttaagaccatggtgacatggtacatat |
49245276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 49059376 - 49059504
Alignment:
| Q |
19 |
tggctaaacctggtttgattactgttattttgaaggtgttcttgaagaatgaagctgaggttttagctgctaatgtttctgttaatgatgggaatttgat |
118 |
Q |
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|||||| |||||||||| ||||| ||||||||| | || || | ||| |||||||| |||||| || ||||| |||||||||||||| |||||||| |
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| T |
49059376 |
tggctagacctggtttggctactgcgattttgaagatatttgtggacaatcaagctgagattttagtggcaaatgtctctgttaatgatggaaatttgat |
49059475 |
T |
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| Q |
119 |
cttggcaatcactgctttggttcaaaatg |
147 |
Q |
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| T |
49059476 |
cttggcaatcactgcattggttcaaaatg |
49059504 |
T |
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