View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_low_18 (Length: 278)
Name: NF12160_low_18
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 28480213 - 28480457
Alignment:
| Q |
21 |
tcatgaagtaaatataaatttaaggttaatttctaattcacaaggtgaaaaccttccaacaaccagaatctcataagaaacttaatttggcttctttctt |
120 |
Q |
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| T |
28480213 |
tcatgaagtaaatataaatttaaggttaatttctaattcacaaggtgaaaaccttccaacaaccagaatctcataagaaacttaatttggcttctttctt |
28480312 |
T |
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| Q |
121 |
cgctcctgtctgaatttggcttcatatgctttccaaaatatagaataactatacttttgaaaaattgaacccaactaattaaacatttaatttttgtagc |
220 |
Q |
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| T |
28480313 |
cgctcctgtctgaatttggcttcatatgctttccaaaatatagaataattatac-tttgaaaaattgaacccaactaattaaacatttaatttttgtagc |
28480411 |
T |
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| Q |
221 |
atacaatacaaacatcatactaccgttttcttttaaaaacaacaca |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28480412 |
atacaatacaaacatcatactaccgttttcttttaaaaacaacaca |
28480457 |
T |
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