View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_low_19 (Length: 272)
Name: NF12160_low_19
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 33079818 - 33080059
Alignment:
| Q |
18 |
tttttcccttcagctccaaaacttcatgctctaacttagcattctttctccttaccacatcaagtgcatttccatcttccaccccttttttcttcaactc |
117 |
Q |
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| T |
33079818 |
tttttcccttcagctccaaaacttcatgctctaacttagcattctttctccttaccacatcaagtgcatttccatcttccacccttttttccttcaactc |
33079917 |
T |
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| Q |
118 |
ctccaactcttcaactacctttccatcttccaccattttatcctccaataccttgtttcgaaggtcatcaaaaccattactatcatctagccacttttcc |
217 |
Q |
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| T |
33079918 |
ctccaactcttcaactacctttccatcttccaccattttatcctccaataccttgtttcgaaggtcatcaaaaccattactatcatctagccacttttcc |
33080017 |
T |
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| Q |
218 |
ttcaactttgtcaactccaaaactttagattctaactcacag |
259 |
Q |
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| T |
33080018 |
ttcaactttgtcaactccaaaactttagattccaactcacag |
33080059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 41509176 - 41509268
Alignment:
| Q |
167 |
accttgtttcgaaggtcatcaaaaccattactatcatctagccacttttccttcaactttgtcaactccaaaactttagattctaactcacag |
259 |
Q |
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| T |
41509176 |
accttgcttcgaagctcattaagagcagtactatcatctagccacttttccttcaacttctccaactccaaaactttagattctagctcacag |
41509268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 41519403 - 41519485
Alignment:
| Q |
174 |
ttcgaaggtcatcaaaaccattactatcatctagccacttttccttcaactttgtcaactccaaaactttagattctaactca |
256 |
Q |
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| T |
41519403 |
ttcgaagctcatcaagagcattactatcatctaaccacttttccttcaacttctccaactccaaaactttaaattctagctca |
41519485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 41519489 - 41519544
Alignment:
| Q |
59 |
ttctttctccttaccacatcaagtgcatttccatcttccaccccttttttcttcaa |
114 |
Q |
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| T |
41519489 |
ttctttctgtttagcacatcaagtgcatttccatcttccaccattttttccttcaa |
41519544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 41469601 - 41469643
Alignment:
| Q |
198 |
tatcatctagccacttttccttcaactttgtcaactccaaaac |
240 |
Q |
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| T |
41469601 |
tatcatctagccacttttcctttgacttcgtcaactccaaaac |
41469643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 41547640 - 41547668
Alignment:
| Q |
212 |
ttttccttcaactttgtcaactccaaaac |
240 |
Q |
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| T |
41547640 |
ttttccttcaactttgtcaactccaaaac |
41547668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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