View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_low_21 (Length: 242)
Name: NF12160_low_21
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7141599 - 7141830
Alignment:
| Q |
1 |
ctttcttcaattgccacttctccagcttgaggaacctctggatgctcaatcaaggttgtctttgagttctcgactatatgaactatctgttgctcgacta |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7141599 |
ctttcttcaattgccacttctccaacttgaggaacctctggatgctcaatcaaggttgtcttcgagttctcgactatatgaactatctgttgctcgacta |
7141698 |
T |
|
| Q |
101 |
catcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggagatatcttccagcctgttttcttcaattgccacttctccaacttgagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7141699 |
catcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggaaatatcttccagcctgttttcttcaattgccacttctccaacttgagg |
7141798 |
T |
|
| Q |
201 |
aacctctggttgctcagccaaggctgtctctg |
232 |
Q |
| |
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||||| |||||||||||||||||||||||||| |
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| T |
7141799 |
aacctttggttgctcagccaaggctgtctctg |
7141830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 7141431 - 7141659
Alignment:
| Q |
1 |
ctttcttcaattgccacttctccagcttgaggaacctctggatgctcaatcaaggttgtctttgagttctcgactatatgaactatctgttgctcgacta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7141431 |
ctttcttcaattgccacttctccaacttgaggaacctctggatgctcaatcaaggttgtcttcgagttctcgactatatgaactatctgttgctcgacta |
7141530 |
T |
|
| Q |
101 |
catcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggagatatcttccagcctgttttcttcaattgccacttctccaacttgagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7141531 |
catcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggagatatcttccagcctgctttcttcaattgccacttctccaacttgagg |
7141630 |
T |
|
| Q |
201 |
aacctctggttgctcagccaaggctgtct |
229 |
Q |
| |
|
||||||||| |||||| ||||| ||||| |
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| T |
7141631 |
aacctctggatgctcaatcaaggttgtct |
7141659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 7140928 - 7141158
Alignment:
| Q |
2 |
tttcttcaattgccacttctccagcttgaggaacctctggatgctcaatcaaggttgtctttgagttctcgactatatgaactatctgttgctcgactac |
101 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7140928 |
tttcttcaattgctacttctccaacttgaggaacctctagatgctcaatcaaggttgtctctgagttctcgactatatgaactatctgttgctcgactac |
7141027 |
T |
|
| Q |
102 |
atcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggagatatcttccagcctgttttcttcaattgccacttctccaacttgagga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7141028 |
atcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggagatatcttccagcctgttttcttcaattgctacttctccaacttgagga |
7141127 |
T |
|
| Q |
202 |
acctctggttgctcagccaaggctgtctctg |
232 |
Q |
| |
|
|||||| | |||||| ||||| |||||||| |
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|
| T |
7141128 |
acctctagatgctcaatcaaggttgtctctg |
7141158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 7141264 - 7141491
Alignment:
| Q |
2 |
tttcttcaattgccacttctccagcttgaggaacctctggatgctcaatcaaggttgtctttgagttctcgactatatgaactatctgttgctcgactac |
101 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
7141264 |
tttcttcaattgctacttctccaacttgaggaacctctagatgctcaatcaaggttgtctctgagttctcgactacatgaactatctgttgctcgactac |
7141363 |
T |
|
| Q |
102 |
atcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggagatatcttccagcctgttttcttcaattgccacttctccaacttgagga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7141364 |
atcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggagatatcttccagcctgctttcttcaattgccacttctccaacttgagga |
7141463 |
T |
|
| Q |
202 |
acctctggttgctcagccaaggctgtct |
229 |
Q |
| |
|
|||||||| |||||| ||||| ||||| |
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|
| T |
7141464 |
acctctggatgctcaatcaaggttgtct |
7141491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 7141096 - 7141326
Alignment:
| Q |
2 |
tttcttcaattgccacttctccagcttgaggaacctctggatgctcaatcaaggttgtctttgagttctcgactatatgaactatctgttgctcgactac |
101 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
7141096 |
tttcttcaattgctacttctccaacttgaggaacctctagatgctcaatcaaggttgtctctgagttctcgactgcatgaactatctgttgctcgactac |
7141195 |
T |
|
| Q |
102 |
atcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggagatatcttccagcctgttttcttcaattgccacttctccaacttgagga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
7141196 |
atcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggagatatcttctagcctgttttcttcaattgctacttctccaacttgagga |
7141295 |
T |
|
| Q |
202 |
acctctggttgctcagccaaggctgtctctg |
232 |
Q |
| |
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|||||| | |||||| ||||| |||||||| |
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| T |
7141296 |
acctctagatgctcaatcaaggttgtctctg |
7141326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 7140760 - 7140990
Alignment:
| Q |
2 |
tttcttcaattgccacttctccagcttgaggaacctctggatgctcaatcaaggttgtctttgagttctcgactatatgaactatctgttgctcgactac |
101 |
Q |
| |
|
||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7140760 |
tttcttcaattgctacttctcgaacttgaggaacctctggatgctcaatcaaggttgtctctgagttctcgactatatgaactatctgttgctcgactac |
7140859 |
T |
|
| Q |
102 |
atcaggacgtgatggttcatcttggtgaagagaaggacgtgaaacagtggagatatcttccagcctgttttcttcaattgccacttctccaacttgagga |
201 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
7140860 |
atcaagacgtgatagttcatcttggtgaagagaaggaattgaaacagtggagatatcttctagcctgttttcttcaattgctacttctccaacttgagga |
7140959 |
T |
|
| Q |
202 |
acctctggttgctcagccaaggctgtctctg |
232 |
Q |
| |
|
|||||| | |||||| ||||| |||||||| |
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|
| T |
7140960 |
acctctagatgctcaatcaaggttgtctctg |
7140990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 7140707 - 7140822
Alignment:
| Q |
117 |
ttcatcttggtgaagagaaggacgtgaaacagtggagatatcttccagcctgttttcttcaattgccacttctccaacttgaggaacctctggttgctca |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |
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|
| T |
7140707 |
ttcatcttggtgaagagaaggacttgaaacagtggagatatcttcgagcctgttttcttcaattgctacttctcgaacttgaggaacctctggatgctca |
7140806 |
T |
|
| Q |
217 |
gccaaggctgtctctg |
232 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
7140807 |
atcaaggttgtctctg |
7140822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 7141768 - 7141886
Alignment:
| Q |
2 |
tttcttcaattgccacttctccagcttgaggaacctctggatgctcaatcaaggttgtctttgagttctcgactatatgaactatctgttgctcgactac |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||| |||||| ||||| ||||| ||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
7141768 |
tttcttcaattgccacttctccaacttgaggaacctttggttgctcagccaaggctgtctctgatttctcgactatatgagctatctgttgctcgactac |
7141867 |
T |
|
| Q |
102 |
atcaggacgtgatggttca |
120 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
7141868 |
atcaggacgtgatgattca |
7141886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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