View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_low_3 (Length: 540)
Name: NF12160_low_3
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Complemental strand, 7258338 - 7257902
Alignment:
| Q |
14 |
cagcagagagatttatcatactaaaagaatgcaaaggttcactcaatatacatattgtgcactgaacattctgttgtgtttaattgtccgcttaactttt |
113 |
Q |
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| T |
7258338 |
cagcagagagatttatcatactaaaagaatgcaaaggttcactcaatatacatattgtgcactgaacattctgttgtgtttaattgtccgcttaactttt |
7258239 |
T |
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| Q |
114 |
cgaacgatacatacctcagctgtttaaaagatttcttttgctgtttgtgtcgagtttatggaaatattcttatcttgctctatggcagctaatcttcttc |
213 |
Q |
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| T |
7258238 |
cgaacgatacatacctcagctgtttaaaagatttcttttgctgtttgtgtcgagtttatggaaatattcttatcttgctctatggcagctaatcttcttc |
7258139 |
T |
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| Q |
214 |
ttttgttcacagggtattctgtgtcaagttcagtggcgatggaagttatgttatttcaggaagtgatgatactaacctcagactttggaaggccaaagca |
313 |
Q |
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| T |
7258138 |
ttttgttcacagggtattctgtgtcaagttcagtggcgatggaagttatgttatttcaggaagtgatgatactaacctcagactttggaaggccaaagca |
7258039 |
T |
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| Q |
314 |
tcagaacaacttggagtagtaagttgatttcattgttgattcattcatcctctttttttacacacac-----acnnnnnnnnnnnnnnctgtcatctatt |
408 |
Q |
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| T |
7258038 |
tcagaacaacttggagtagtaagttgattt-----------cattcatcctctttttttacacacacaaaaaaaaaaaaaaaaaaaaactgtcatctatt |
7257950 |
T |
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| Q |
409 |
aattgtggttcatgttgtactaagattgaaattctattataactgtga |
456 |
Q |
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| T |
7257949 |
aattgtggttcatgttgtactaagattgaaattctattataactgtga |
7257902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 462 - 535
Target Start/End: Complemental strand, 7257862 - 7257789
Alignment:
| Q |
462 |
ttaataatttctcttctgagaggcccttcaattcattccgagattcacctgtttatgatgatgccacaggttct |
535 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7257862 |
ttaataatttctcttctgagaggcccttcagttcattccgagattcacctgtttatgatgatgccacaggttct |
7257789 |
T |
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