View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_low_6 (Length: 468)
Name: NF12160_low_6
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 30 - 450
Target Start/End: Original strand, 30411328 - 30411748
Alignment:
| Q |
30 |
caccaattgattgagagtcagatagccacattcaaccatacggtggatccgtccctgaatatggtgctaatagaaagttgccttcaacaattgctcactt |
129 |
Q |
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| T |
30411328 |
caccaattgattgacaatccgatagccacattcaaccatatggtggatccgtccctgaatatggtgctaatagaaagttgcctttaacaattgctcactt |
30411427 |
T |
|
| Q |
130 |
ctttnnnnnnnnnntcaattgctcacttaaaacctccataagcaaaaattagttaaagacatacctgtaacttttaaaaatacttcgatcataactgttc |
229 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| ||| |
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| T |
30411428 |
ctttaaaaaaaaa-tcaattgctcacttaaaacctccataagcaaaaattagttaaagacatacctgtaactttttaaaatatttcaatcataactattc |
30411526 |
T |
|
| Q |
230 |
aattgatccaatataatacaaagtttcgattattatactttattaaatgcaccactcattgaaattctagttcaaagattacagagtttcatcaccaagt |
329 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30411527 |
aatttatccaatataatacaaagtttcgattattatactttattaaatgcaccactcattgaaattctaggtcaaagattacagagtttcatcaccaagt |
30411626 |
T |
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| Q |
330 |
actgtattggtggattatatactatggagtacttattatttaggtgagttttgtttccactttccacataaaattctaatggaaggattt-aactacgga |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
30411627 |
actgtattggtggattatatactatggagtacttattatttagctgagttttgtttccactttccacataaaattctaatggagggatttaaactacgga |
30411726 |
T |
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| Q |
429 |
gcagaaacattttggtcatgtg |
450 |
Q |
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|||||||||||||||||||||| |
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| T |
30411727 |
gcagaaacattttggtcatgtg |
30411748 |
T |
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