View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12160_low_7 (Length: 453)
Name: NF12160_low_7
Description: NF12160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12160_low_7 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 21 - 434
Target Start/End: Complemental strand, 43281 - 42868
Alignment:
| Q |
21 |
agtcaggactttgttggcggagaaatattcacttgaaaatgaaattcaacttctggatgagaagaattgtgttttgaaaaattcggttttggcatttgta |
120 |
Q |
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| T |
43281 |
agtcaggactttgttggcagagaaatattcacttgaaaatgaaattcaacttctggatgagaagaattgtgttttgaaaaattcggttttggcatttgta |
43182 |
T |
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| Q |
121 |
gaggaaattcttgaagatcttcataattcaaactcaggtaataatatatgtatacaaggaagtaggtttttcatgctagttattacttctgtgtttatat |
220 |
Q |
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| T |
43181 |
gaggaaattcttgaagatcttcataattcaaactcaggtaataatatatgtatacaaggaagtaggtttttcatgctagttattacttctgtgtttatat |
43082 |
T |
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| Q |
221 |
tattattgcaccaaaccaaataaggattaacatatatatagaagttaaagaagttaatgctgcagcctaacctttttatgcacttccccaaaccccctac |
320 |
Q |
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| T |
43081 |
tattattgcaccaaaccaaataaggattaacatatatatagaagttaaagaagttaatgctgcaacctaacctttttatgcacttccccaaaccccctac |
42982 |
T |
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| Q |
321 |
tgcagaattagaagctgaaatccagagcaaaaactgggagaatgagagattacttaatgatatcaatgaattgaagagtacaatgttttcagcaattgag |
420 |
Q |
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| T |
42981 |
tgcagaattagaagctgaaattcagagcaaaaactgggagaatgagagattacttaatgatatcaatgaattgaagagtacaatgttttcagcaattggg |
42882 |
T |
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| Q |
421 |
agcagtgataatct |
434 |
Q |
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| T |
42881 |
agcagtgataatct |
42868 |
T |
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